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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003944 ID=TCONS_00003944|Name=TCONS_00003944|organism=Clytia hemisphaerica|type=transcript|length=721bp
ATTATTTTGTATGTTAAAATAATTAGATCAAACAACTTCAGTTCAACCAA
TACCTCTTGGGAAGTTTTAAGAATCTGATTGCAAGGAATCACCAaagtat
ttcatttttttagaacACTGAAAATTAGAAATATGACTTTAACAAATACA
AATGGTATCTTTTTCAATGATGTCTCAAAACTCTGTGTATTGGAACCTGA
AGTGAACCAACAGACTCATGAGCTCAAAACAGAATGTaaagattttgttg
aaaaaatatcaGAATTTCAAGGTATTGTGGGTGGTTTTATATCAGTTGTT
GATGGTTTAGCAAAAGGAGTCGAGAAGGAAAAAATGAAAGCGATAGGAGC
ACGAAATTCACTCAAATCGATGACTAAACAGAGAGAAGCCCAACAGCAAC
AGTTGAGAGCTCTTATTGCAGAGAAACAAACACAATTAGAGCGATTTCGA
CTTCAGTATGAATTATTATTGAAACAAGAGGCTGAACAGAATGATTTTAT
CGAACAATTCATGATGCAAAAGTAAAACGGACTATCTTTTGGGAAACTAT
ATTTATACTGTGGTATGTGTCCTTTTAAATGGAAAGCTCGAACATAATTG
GAACATTTTAGAGAGAGACtaccttaaaagaagaaattttggcggaaaga
aaatttggcggatttggcggatttgactgaaatccgccaaattaagttcc
cgccaaaatttcttttttccg Run BLAST on NCBI protein sequence of TCONS_00003944-protein >TCONS_00003944-protein ID=TCONS_00003944-protein|Name=TCONS_00003944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MTLTNTNGIFFNDVSKLCVLEPEVNQQTHELKTECKDFVEKISEFQGIVG
GFISVVDGLAKGVEKEKMKAIGARNSLKSMTKQREAQQQQLRALIAEKQT
QLERFRLQYELLLKQEAEQNDFIEQFMMQK Run BLAST on NCBI transcript from alignment at sc0000038:418950..420962- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003944 ID=TCONS_00003944|Name=TCONS_00003944|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at sc0000038:418950..420962- (Clytia hemisphaerica)
ATTATTTTGTATGTTAAAATAATTAGATCAAACAACTTCAGTTCAACCAA
TACCTCTTGGGAAGTTTTAAGAATCTGATTGCAAGGAATCACCAAAGTAT
TTCATTTTTTTAGAACACTGAAAATTAGAAATATGACTTTAACAAATACA
AATGGTATCTTTTTCAATGATGTCTCAAAACTCTGTGTATTGGAACCTGA
AGTGAACCAACAGACTCATGAGCTCAAAACAGAATGTAAAGATTTTGTTG
AAAAAATATCAGAATTTCAAGGTAAAAGGGTTGTCATCAGAAAATCTTAT
TGATTTTTATGTTATTACGCGGTAGAAACTTTCCATCCATGTGTTTCGAA
ATCTTGCTAAATGAACAAAATAGCTGTAAAATGTTCAAAATAACTTCATG
TGGAGGATACTTGAATATCTTTATAACCTCTAGTTGAAAATTTCAATCTG
AGTTTGGATTGATCCTTGAAAAAAGGATGCGTGTAATCACAGCGCAAAAA
TTTGCTATTTGCTACTATATTGAATGCTCTTGACGGTCTTAGCCCTGCTC
GCAGAGTGGATAGTATGTTTCCCATTGTTTTTTGCCTACTAACGGCTGAT
AATTGCGAAATCGTTAAATAAGGAAAAGGAATTGTTCTTAACTTGTTCTT
ACGTTGAAATTCGAAAAGAGGCTCTACTTGGTACCATGAGGTTATCTTCA
TTCTAAAAATCTTTGATTACACCATTTTTTTATATAAGTAACTCCAATAT
TTGGGTCAGGCCTAGTATTGCTTAGCATTCCAGCTACTTTTCTGAAAGAA
TTTGCTTTTACCACTACATCACTACATTTTAAAACTTATTGGGCCAAGGG
CTATACATACTTTAATCGGATTAAATTTCGCGAGCTAAAAAAATCGCGAA
ATTTTCTGGATTTAATTTCGCGAGTCAGAGTTTTGAAATATTTCCCGTGG
ATATAATTTCGCGAATAAGCCAGAAAACAGCTGAAAATAGCCATTTTTTG
CCATAAATGGAGACTTGGAACTAGTTTCTCCGCCAAAAATACAATTTTAA
AAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTATCCTTTATTTCGCTG
ATCATTGTATTAACGTCTTTGGACTTCAGTTGAGTGATTTCTACGTCCTG
GGCTTTCATTATATTTTCGCAAGCTTTTATCTGAAAAAGTGTGTATNGCG
AATCAGGAATCTCACGCGTGTTCGCGAGTTTTAATTTCGCGAAAATGGCA
AAAATTCGCGAAATCGCGAAATTTAATCTCGCGAAAATTTATCCGATTAA
AGTAACCATGGTATTATTCTCTAAATAGCATTTACTTTTTAAAGATAAGA
TAGTGAAAGAAATTTGAAAATTTCAGGGTTTAAGCTTTAGCAACACGGTA
CAGTTTTAGCGCAAATCGCCAAGAAAAAATGTGTATCTCTTTTAATAACT
TTTCCATCCTTAGGTATTGTGGGTGGTTTTATATCAGTTGTTGATGGTTT
AGCAAAAGGAGTCGAGAAGGAAAAAATGAAAGCGATAGGAGCACGAAATT
CACTCAAATCGATGACTAAACAGAGAGAAGCCCAACAGCAACAGTTGAGA
GCTCTTATTGCAGAGAAACAAACACAATTAGAGCGATTTCGACTTCAGTA
TGAATTATTATTGAAACAAGAGGCTGAACAGAATGATTTTATCGAACAAT
TCATGATGCAAAAGTAAAACGGACTATCTTTTGGGAAACTATATTTATAC
TGTGGTATGTGTCCTTTTAAATGGAAAGCTCGAACATAATTGGAACATTT
TAGAGAGAGACTACCTTAAAAGAAGAAATTTTGGCGGAAAGAAAATTTGG
CGGATTTGGCGGATTTGACTGAAATCCGCCAAATTAAGTTCCCGCCAAAA
TTTCTTTTTTCCG Coding sequence (CDS) from alignment at sc0000038:418950..420962- >TCONS_00003944 ID=TCONS_00003944|Name=TCONS_00003944|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000038:418950..420962- (Clytia hemisphaerica)
GTATTGTGGGTGGTTTTATATCAGTTGTTGATGGTTTAGCAAAAGGAGTC
GAGAAGGAAAAAATGAAAGCGATAGGAGCACGAAATTCACTCAAATCGAT
GACTAAACAGAGAGAAGCCCAACAGCAACAGTTGAGAGCTCTTATTGCAG
AGAAACAAACACAATTAGAGCGATTTCGACTTCAGTATGAATTATTATTG
AAACAAGAGGCTGAACAGAATGATTTTATCGAACAATTCATGATGCAAAA
GTAAATGACTTTAACAAATACAAATGGTATCTTTTTCAATGATGTCTCAA
AACTCTGTGTATTGGAACCTGAAGTGAACCAACAGACTCATGAGCTCAAA
ACAGAATGTAAAGATTTTGTTGAAAAAATATCAGAATTTCAAGGTATTGT
GGGTGGTTTTATATCAGTTGTTGATGGTTTAGCAAAAGGAGTCGAGAAGG
AAAAAATGAAAGCGATAGGAGCACGAAATTCACTCAAATCGATGACTAAA
CAGAGAGAAGCCCAACAGCAACAGTTGAGAGCTCTTATTGCAGAGAAACA
AACACAATTAGAGCGATTTCGACTTCAGTATGAATTATTATTGAAACAAG
AGGCTGAACAGAATGATTTTATCGAACAATTCATGATGCAAAAGTAAATG
ACTTTAACAAATACAAATGGTATCTTTTTCAATGATGTCTCAAAACTCTG
TGTATTGGAACCTGAAGTGAACCAACAGACTCATGAGCTCAAAACAGAAT
GTAAAGATTTTGTTGAAAAAATATCAGAATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003944-exon-sc0000038-1575043694:420692..420962 | TCONS_00003944-exon-sc0000038-1575043694:420692..420962 | Clytia hemisphaerica | exon |
| TCONS_00003944-exon-sc0000038-1575043694:418950..419399 | TCONS_00003944-exon-sc0000038-1575043694:418950..419399 | Clytia hemisphaerica | exon |
| TCONS_00003944-exon-sc0000038-1510915933:420692..420962 | TCONS_00003944-exon-sc0000038-1510915933:420692..420962 | Clytia hemisphaerica | exon |
| TCONS_00003944-exon-sc0000038-1510915933:418950..419399 | TCONS_00003944-exon-sc0000038-1510915933:418950..419399 | Clytia hemisphaerica | exon |
| TCONS_00003944-exon-sc0000038-1491911889:420692..420962 | TCONS_00003944-exon-sc0000038-1491911889:420692..420962 | Clytia hemisphaerica | exon |
| TCONS_00003944-exon-sc0000038-1491911889:418950..419399 | TCONS_00003944-exon-sc0000038-1491911889:418950..419399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:418950..420962 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028172 | FT20 |
Blast
BLAST of TCONS_00003944 vs. Swiss-Prot (Human)
Match: IFT20 (Intraflagellar transport protein 20 homolog OS=Homo sapiens GN=IFT20 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.034e-39 Identity = 85/123 (69.11%), Postives = 103/123 (83.74%), Query Frame = 1
Query: 154 GIFFNDVSKLCVLEPEVNQQTHELKTECKDFVEKISEFQGIVGGFISVVDGLAKGVEKEKMKAIGARNSLKSMTKXXXXXXXXXXXXXXXKQTQLERFRLQYELLLKQEAEQNDFIEQFMMQK 522
G+ F++++KL VL+PEV QQT ELK ECKDFV+KI +FQ IVGG I +VD LAK E EKMKAIGARN LKS+ KQREAQQQQL+ALIAEK+ QLER+R++YE L K EAEQN+FI+QF+ QK
Sbjct: 10 GLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAEQNEFIDQFIFQK 132
The following BLAST results are available for this feature:
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