TCONS_00004227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004227
Unique NameTCONS_00004227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004227 ID=TCONS_00004227|Name=TCONS_00004227|organism=Clytia hemisphaerica|type=transcript|length=2072bp
ATCATCTTCTTGTAGCATACAATATCGTTACCATACCTCTGATTCCTTTA
TTATGTAGTGGTTGACAAAAAGATTGGGTCCTAAGGAGGTCCTTAATTGA
TTTTCCTCAGTTACGAAATATGTATATAATGCCAAATCACTTCCATGAAA
aacgagttatttttttcagtcgTTGAAGCGTTGGATCACCAACCAAAGCC
ATATTTAATAAGAAGATCATTTTCATCGTCTTGAGCCTTGAAAGAATGAA
AGAGACTGCGATTCAAACAAGagaTTTTGTAGAGAAAGAAATGGATGCag
gaatcaaaagaaaaagtgaagatcATCCCaatgaagattttgaaaagCGA
GCAAAATATGCCTACTTGGGAAAGATTCCGAATGTGAATGATACAAACAC
TCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGTGTTAGCTGACG
CCCTTAAGATCTTCAAGAAACGTCAAATTAATTTGAAGCATATCGAGTCA
CGACCATCTAAATCTAACAAGAAGGATTATGAATTTTATGTGGATATCGA
TGCAGAGACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGATTTGA
AGTCGAAAGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGTTCCATGG
TTTCCAAGAAAAATCGCTGACCTTGACAAATTTGCTGACAGAGTTTTGAG
TTATGGTTCAGAGCTTGATTCAGAACATCCTGGATTCACTGACCCAGTCT
ACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCATCAAATACCGACAc
ggAGAGCCGTTACCACGTGTCACTTACACGGAAGACGAAATTAGCGTTTG
GAACACAGTTTTCTCTGAGTTGACGAAGCTATTCCCGAAATATGCGTGCA
GAGAAGTCAACTTCATGCTTCCTCTTCTTGTAGAAAACTGTAATTACAGA
ATCGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAAGATTG
TACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACGTGACT
TCTTAGCTGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATATCCGA
CATGCAAAGACTCCTATGTATACTCCTGAACCAGATTGCGTCCACGAGTT
AATTGGACACGTTCCTTTGTTCGCTGACCCGAGTTTCGCGCAATTCTCTC
AGGAAATCGGATTGGCGTCACTTGGTGCTCCCGATGAATGGATCGAAAAA
CTGGCTACCTTGTATTGGTTCACAGTGGAGTTTGGATTATGCCGTCAAGA
TGGTGAAATCAAAGCTTATGGCGCAGGATTGCTCTCTTCCTTTGGCGAGC
TACAATATTGTGTGTCTGACAAACCGGAACATTTGGCTTTCGATCCGGAA
AAGACATCACAGACCAAATACCCGATTACGGAATTCCAACCGCGATATTT
CGTAGCGGAATCCTTTGAAGATGCCAAAGAGAAAGTTAGagcGTGGAGCA
CAAAAATTCCACGACCATACCAGGTGCACTACAATCCTTACACACAAACA
GTGGAGGTGTTGGATACACAAGACCGAATCATCAACGTTGTTACCAATGT
GAAGTCTGATCTCGATGTCCTACATGCAGCACTCAAAAAAATGGACTAAA
AAATCGTGCAGTGCAGTGcagttttgtttttaactaaattttaaccaaac
ttttagttttagcattttttttaatttgagaaTATTCGCATCAAAATCTC
TCGTTCAGTGTTGTATAGAAAAGCTTGTTTTAAAATCGAAGTTCATTAAA
GTCCGcataaaatttcaagaaaaaacttttgaatccACAGCCGACACTTG
CATATTTCAGGCCTCATTTTTAGGCGAATTGTACAtaattattttgtatt
ttgtatttatttcaCTATATTCTTAATGTTATTTTATTAAGATTTTTTTg
tgtaactttttttttgatgatCTACCCTTCAAGGTAGAAAAGGATGATTA
TATTAAAACtgagaaattttactttttattaatTGGAAAGAAATGCTTAC
ACATGAAGCATTAAAATTGAAT
Run BLAST on NCBI

transcript from alignment at sc0000041:217454..226858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004227 ID=TCONS_00004227|Name=TCONS_00004227|organism=Clytia hemisphaerica|type=transcript|length=9405bp|location=Sequence derived from alignment at sc0000041:217454..226858+ (Clytia hemisphaerica)
ATCATCTTCTTGTAGCATACAATATCGTTACCATACCTCTGATTCCTTTA TTATGTAGTGGTTGACAAAAAGATTGGGTCCTAAGGAGGTCCTTAATTGA TTTTCCTCAGTTACGAAATATGTATATAATGCCAAATCACTTCCATGAAA aacgagttatttttttcagtcgTTGAAGCGTTGGATCACCAACCAAAGCC ATATTTAATAAGAAGATCATTTTCATCGTCTTGAGCCTTGAAAGAATGAA AGAGACTGCGATTCAAACAAGGTAAGGGTTATGCATTTAATTTCTTACAG TGCAGTTTCTctttgattttcgaaaaagagaGTTGAAAATAAGTTCCTTC TTATCCTTGGGTTGAAATAAGTCGGAATTTTCTATAGTGCAAACATTCAT TGACCTCAAATCACGAAGAATTCCAAAGACTAATCTTTGGGTGAAACTTC TCCTCGAGGCTCGATTTTTAAAACTCTTCTTCCACTGCGCCCGCCCGGGT GGTTTGTGTTTGATCTCGCTTTTTTGGGCGGTGCGCCCTTAAAAAGAAGC CGGTAAAAAACGGGGATACCCGGCTATTCTTAAACCCGGAAAATAAACAA GGAAAGATCattttttgtcaacaaaattcttggaattctgtcacttttgt tttctttttgtggTGCGAGAGCTttcgttttctatttttagactttcttt tactttttttgaacAAAGTACTTATTATATAATTCTATAGCTATTTTCTT GTGATTTGAATCTATATTTTCTCACTGAGATCATAACATATCAGGTCATA AATAGTcataaatatgaaaaataagaGGGTGTTTTAGTGGGAGTGTGTTA AAGTTATATTCGTTCTGTTCTGATTTTCCTCTTCTTGTATTGCTGTAGTT GTTTATAGTCTCAATATTTTTCTCTATCATCTATGACATAGAACTAGAAT GTATACTCTAAATTATATGTCTCTGTGTTTTcatcatcaaaattatttta actcttttttttttgtaaaagctgtcATGTGATAGTAGAATATATCTGTT AAAATACAACCCTGTCAAAAGCTTTGCTTTTTGTGAATGTTATCCATTCT TGTGTTGATTAAAGTCAGGCAAAGGTTGTAGCAAGGCTTGTTGTGAAATG TTTAGCTTGTTAATTTGGTTGGCATGAAGAGAACTTTTTTATCGCTATCT TCTCcagtttcaaaagtttataaTTGTTGGGTATCCAGTtggaaattatt ttcattttttgatgtgTTTCTTGGTCTGAATAGGTATTTGTATTCAGGCT AGGAAACGTCAAAAATAAATATCCTTAGACCGCTTAGCTAGCTCGCAAAT TTTAAGAGTGAAGACTTGTAATTTATTGAGCATTTTTAGTTTTATGTTAT GAAATTGCAAATTCTCTCATAAGGTCAcatttaaaagaagaaatttctga gtgaaagaaaatttgagggATTTGGCGGACTTATATTTATGAATGTATAA CTGCAAAAATTTAAGTAATTTTTACCAAATTCCGGCTATTTTTTGCCtat aaataagtttttttgcttTGTAATAACTTGTAATAAAGATTTTTGTCCGA AATGTCCTGCAACAGccaaatcaaatttattcagGGTTATCCACCAAAAT TGATTTCTTCTGTAAACAGAAAACTTTTCGGCTCTTATTAATAATATTTT CTAATTTCTGTAAGAATAATAAAAAACATTATACGCTGTTGGATGGCATA TTTTTTTTTGGCAATTggctttttaaaaagtttatcaCAGCAGGCCGAGT ATATATATacatgagaaaaaaaagagaaaatttataTGCAAGTAGAGTAT TTATTCTttacacctttttgaaaaatatcatgaattttcacaaaaagatt CAAGAAAATCAATGTATATATGggagatgaaaaaaattttatgagcaaat ttttgaaacttgtgtTTCTCTTCCAAACTATGCAGATAATCTAAATTGGC CTACAGATACCTTATATTGATCTAGGCGGGAGAAACCTATAAATCATTTG ACCCAATTGTTTCAAAAATCTGAgatatttcatttcaaaagtttggtttt ttttaatgataGAACATAAAGAATATGTATATAACCTCCTtccttgaaat ttcaaaatcaatttcaataTCATAGCTTTGGAAAGTACCAATATTCaagt caaaaacttttctgGGTTTTCTGCTCCTGTGCAAGGTACAATATACTTGG ATCttcaaaaaattagatttttttcaaatgaccTATGATGAAAAGTGTGA TATTCAAAAAGactaaaatgaatttttgttgGAGTGTCTAATTTGCCGGT TTGGTTGTCATTTTTAATTAATATCTCCTTTTGCTAATCAATTCATTCCA AATGAAACAAAATTCTGTCTAAAATAGATAATTTTACCTCAGAGCATGAA AGTGACAAAAGTTAGAATGCTTATTATTCATGATCACTTTTTAGATTAGA TTGATATAAATGACTATTTAAATCATTTACTAGCTTTTTATGCTTGCGGA CTTTCTGCTTTATAACATTATAACAATGTCAATTCAATCAATGGTGTATT CTTTCAATGGGGATTCAGGAAAATTCTGCTATTTATATGATCATATCAGA TCATCGAGAGTTATTTTGCTAAATGGTTTGAAAGCATAATTTAAACCatg ttgaaaatatttatttaattgCAGTGTTAATAAGATAAGGGCAGCAGGTC ATTAACAGCGATGTTATGCCGTTATTAATATTACTGTCGACATGCTTAGA TGTATCTCATTGCTATCTtgtcagtttgaaaaaaagtggattatataata taatattttttctaatttttacaactttttgatttttaagagaTTTTGTA GAGAAAGAAATGGATGCaggaatcaaaagaaaaagtgaagatcATCCCaa tgaagattttgaaaagCGAGCAAAATATGCCTACTTGGTGAGTCACCTTG AAAGTTTTGGAATTCTCATATTTTAATCATTATTTATCTTATCAATGTTT ATCTTAAGAAATACCTGTATAGCTCTTcctaaaatatattttgtttacat ttctaCATCTTTACATTTTCAGGGAAAGATTCCGAATGTGAATGATACAA ACACTCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGTGTTAGCT GACGCCCTTAAGATCTTCAAGGTAAAAACTCGTcccttattttttgttat tgcCTATCTATGCTACTTTTTAATACTGTTTCTTCATAGTAATTATAATT CATATCTTATCAGGATAAATGTGTCTtgtatataatttcaaaaacacTAC TTTTTCTTAGAAACGTCAAATTAATTTGAAGCATATCGAGTCACGACCAT CTAAATCTAACAAGAAGGATTATGAATTTTATGTGGATATCGATGCAGAG ACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGATTTGAAGTCGAA AGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGGTAGGTCGAAAATAA GTTTGCAACATTATCATCTTAAAAAACCTACTGTACCAAGCTTCATAAGT AATTAAAGCCAAAATCATTCTACtaaaaaacagatttttcacTCCTAAGT TTAATAGAAATAGTATTATTTCAATAAAGCAACATTCTAATGTTGTGAAT CAGATACGACGTATTGCGCATGGCAGATACGTCGGGGCcgtatcagattt aaaaaggcTTCCGTCGCTCCTGTTTATTAAATACTACACTAATCTATTTT GTACTTTGATGTATTACGTATTCAAGTCCACGGGATTTGTTTTACACACA CTTACTATATATCGTTTAACATTGATTTGTTATTGAGCTAGCGACATTCT TTCTTTTAGAAACTTGTACTATTTTTTTGCTAACTCAAATTTTTTCGCAA TGTTTTTATGTACTTATATACGACTTGACGTAAATATTGCTGGAAGCTTT TAAGTCTATCAATTCGGCTTCGAAACTTGTTTTTCTGAAAGCACATTCAA GTAACATTCCATTTTCAATGCAAGTTGAGACATTAACCAAAAACAACTAA CTTTGAAACTTCTCTTTGATTTCGTTTAGTTCCATGGTTTCCAAGAAAAA TCGCTGACCTTGACAAATTTGCTGACAGAGTTTTGAGTTATGGTTCAGAG CTTGATTCAGAACATCCTGTAAGTGACGTTTAGAAAATTTGTTTCAACTT GAGGAACaatgaaaaattggccaaaatatcgtcctcagtggaaaattata cttcaatttttgtccctgCTGAAAACAATCAGATAAGcgaatcctcactg caaaatacttTGCTATTTtatccatccccactgaattttatggctcgaag acaatggaattcaaatccccagccctTAAAAACGTGGGAATATTAATCct catcgagttttggtccgttatttttacctccACTGGCTGTAAAAATCCTA CGGGGTTtgcgagaagggggtgtagtGAGGTACTGAACTCGATAATGGTT TAATAATCACTTAAACATTTCACTGTCTCATATTTTAGGGATTCACTGAC CCAGTCTACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCATCAAATA CCGACAGTACGTCTTATGTTGATGTTAAGGCTAATAAGAATTTCACGTGC TGTTATAGGTTTCATCCTTACTAAATTATCACGCACTGTGTTGCATAACA TTTTACTTTCGATTATCAAATACATGTGGTTATTTTACTTCCATATCTGT ATCATACGGCAGCTTAACCTCAATTAAAATCGATGaaaagataattattt tttattttagcggAGAGCCGTTACCACGTGTCACTTACACGGAAGACGAA ATTAGCGTTTGGTAAGTTTCCCATGTCTCTTAGTGACGTAAACTCTTATA TTAATAAAGTGATTATCCTTCTCGTAAATCATAGCAAGTACTTTTCATCA CGCAACTATTATCTCAATGAATTATCGGAATAATGAATATTGAATCACAT TTTTTCTCGTATTTATAGGAACACAGTTTTCTCTGAGTTGACGAAGCTAT TCCCGAAATATGCGTGCAGAGAAGTCAACTTCATGCTTCCTCTTCTTGTA GAAAACTGTAATTACAGGTACGTCTCATTGAAGAAGCACTTTTGTATAAG TTTACAGTGACTTCTCAAAAAATATTGccaatgaaaaaattgaaatgaac cGCCTCTCCAActaaaggaaaaataaaagacgTCATCATCAGATATAAAA GACCCTTCAGTCTATCCcaacagaccagaaaatattcaTTAGATCAATGA GATAGGGATGTACATAATATTGAACAAACTTAACGGTGCGTGTTTTGTCA AGGATATcttcatcatttttcattctaCTGACGCTTATTAATTTCAGAAT CGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAAGGTCAGT TTCAAAATCCGTTTTCTCGATAAACTATTTCTTACGTCATTAATGAACTC ATTTGACGTTTGTTGTTTTAGCAACACATCTAATTCTTGATCACCGTAAA ACTATACATCAATTTTCACCATTTGATAATTTGCGCTTATCTTTTCCACA GATTGTACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACG TGACTTCTTAGCTGGANTCTTACGTCATTAATGAACTCATTTGACGTTTG TTGTTTTAGCAACACATCTAATTCTTGATCACCGTAAAACTATACATCAA TTTTCACCATTTGATAATTTGCGCTTATCTTTTCCACAGATTGTACTGGT TTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACGTGACTTCTTAGC TGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATATCCGACATGCAA AGACTCCTATGTATACTCCTGAACCGTAAGTggaaagtaataattatgac gtatgcgtttCGGAGCGCTATTACATGTACGTTTCAAGTAATTCAATACA GTAATTTCGCGATTTAGCGACTACCACTCCGGTAGTGTAGTATTGCATGT GATCGAAAAAGATTTCATCTTTTACTTACTTTGATTTTCAGAGATTGCGT CCACGAGTTAATTGGACACGTTCCTTTGTTCGCTGACCCGAGTTTCGCGC AATTCTCTCAGGTAAACAATGTCCCACctcgaaaattcaaaatattgtcT TCTTTTCGATCTTGCTATAACAAAGAGATTTTATCCACCAACTTACCCCA GACTTCTTGTTTAATGGgtcttttgatttgattctttttagGAAATCGGA TTGGCGTCACTTGGTGCTCCCGATGAATGGATCGAAAAACTGGCTACCGT AAGTTTTCCTTTTTGTTCAAcagttttattgttttttttttgttgttgtt acaACTGATAATATGGACGGAAAAACTCTACACCTGTTGATTCCCTTAGG CAGCAAACCTCGACGCGaactttctttattttgatagcTATTTATTTTAT GCTTTATTATACGCTACCATGCTGTCAATTTTGTCATCTAAAAGAATTGG TCAATACACCAAactttttataaagttttcacTATACATTTCTTCAGTAG AAATTTCGCGTTTCCCTTTTTAGTTGTATTGGTTCACAGTGGAGTTTGGA TTATGCCGTCAAGATGGTGAAATCAAAGCTTATGGCGCAGGATTGCTCTC TTCCTTTGGCGAGCTACAAGTAAGTGAAAGAATACTTATATACCAGTAAA CTTTAATCAGTTATCGGTTATACATTACTCCCGTTTTATTATacaccctt tctcacagacccggtaggaatttttcagccagtgggaataaaaataacgg actgaaactcgatggggattgatattcccaagtTTTTTATAGCTAGGGAT TGATATTACACTGTTTTTTTTGTCAGAAATTTCAGTGATGATGGAAAAAT AATATATtaatttgcagtgaggattggtttatttgattattttcagtggg gacaaaaattggaggataattttccactggggacgatattatGGCCAAAT TtccaagtgggtctgtgagaagggggtgttataaTTTGTTAGGAAGGGCT TTGTTCGACATTCGATCCATTAACAAATCCTGATAAAGTGATTAAGTTTG ACATGAATTGAAGCGGTAGTGTTTTCTTTTGGCGTCTTTTTGTTGAcggt tatttttcacatttattcACAGTATTGTGTGTCTGACAAACCGGAACATT TGGCTTTCGATCCGGAAAAGACATCACAGACCAAATACCCGATTACGGAA TTCCAACCGCGATATTTCGTAGCGGAATCCTTTGAAGATGCCAAAGAGAA AGTTAGGTAAGGATTCTAATTTAATTTTCATGTTCTTCTGTTTTTTGAAA CActctgaaaagtttttttttttacatttgaatTTTAACACTGCAGACGT GTAAGCTTTCTGACTTGATGATGTGTAACGGCTGACCGACTCAATGATTG TTTGCGCAGagagaaaatgagcaaaaatctTTGGTTATGAAAGTTGGCAA ACCTTGCTATTTATCATCCATCAGACAGTCGTATTGATGGGGGGCACGTT TGTTTTAGGAAATGGGCGAATCATATTCCCAAGCCATTCGCACTGCACTT CAACCCTTACACACAAATTGTTGAGACGCTAGATCGTAAAGAACAGGTCC TTAAATTGATTGAAGACGTGCGAGGAGAATTGGACCATGTATCGACAGCT CTCTCCAAGCAGCAATGACGAATCTTTTTAAAGTGACTAAATTGATGACC CGAATACGATTGATAAAATAACTCCCTAGAATAAGCTTAGATAAATAACT TGGACGTGTCTACTAGAAATCCGATGAAACCTCAAAAGGAACATAGCTGG AGCAGAGGAActttaaatttctttgaaagaatTTGTTGCTTGTGGCTTTC ATTTGGATCGATATTTTCGTGACTTTTTGTCATGAAGTCAACCGGAATGA CGtttagaatttttgaattattatttttgaaagaagataaacatgaaata ttttttctcaaatggttttttttttttttttcatcattaatttcttgatc tccaaaagtatattggttcttcttacaagaagttgaaatattttatgtat atgttatgtatATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNtttatgtatatgttatgtatataaatgtatataaaattctaCGATTCA AACTGATACGAAGTGGACAGCTAAATCATTAATGGAAGCTTAGTGGGCTG GTTGGCTACATAGTATAGAAATAGTAAATCAATGGGCAACCTAAATGTAG CCTTTTTTATCGTCTAACCATTCATCAGATCAAAAATTGATATTCGAGAG AATTCTTTTTAACAAGAATGACAAGAATTTGACAAAAAGTCTCTTGTGTA TTTTTTTGATAACAACCAGACATGATTGACGTTCAAACCAACATAACATG GAAGCTTTTAAACAGAACAAAACGATCAAATTTCTCTTAATTCTATAATC AAATTAATGAGCTTTGCATAGCGACATTGCATAGCAATGCTTTTAACTAG CCTGAGTCCGCATGGAAAATGGACTTTGATCAGCAATAGGGCTAACGCGA GTATCAGACGCGCATTAAAAACAATGATGTTATGATTCAATTGTTTGTAA CGATTTGCCTTGTTCAGCCAGTCTAATTTAAGTGACTTTACTATGAaaac ttttatttgtttttttttttagagcGTGGAGCACAAAAATTCCACGACCA TACCAGGTGCACTACAATCCTTACACACAAACAGTGGAGGTGTTGGATAC ACAAGACCGAATCATCAACGTTGTTACCAATGTGAAGTCTGATCTCGATG TCCTACATGCAGCACTCAAAAAAATGGACTAAAAAATCGTGCAGTGCAGT Gcagttttgtttttaactaaattttaaccaaacttttagttttagcattt tttttaatttgagaaTATTCGCATCAAAATCTCTCGTTCAGTGTTGTATA GAAAAGCTTGTTTTAAAATCGAAGTTCATTAAAGTCCGcataaaatttca agaaaaaacttttgaatccACAGCCGACACTTGCATATTTCAGGCCTCAT TTTTAGGCGAATTGTACAtaattattttgtattttgtatttatttcaCTA TATTCTTAATGTTATTTTATTAAGATTTTTTTgtgtaactttttttttga tgatCTACCCTTCAAGGTAGAAAAGGATGATTATATTAAAACtgagaaat tttactttttattaatTGGAAAGAAATGCTTACACATGAAGCATTAAAAT TGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002353XLOC_002353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004227-exon-sc0000041-1491911889:217454..217724TCONS_00004227-exon-sc0000041-1491911889:217454..217724Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:217454..217724TCONS_00004227-exon-sc0000041-1510915933:217454..217724Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:217454..217724TCONS_00004227-exon-sc0000041-1575043694:217454..217724Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:220344..220440TCONS_00004227-exon-sc0000041-1491911889:220344..220440Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:220344..220440TCONS_00004227-exon-sc0000041-1510915933:220344..220440Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:220344..220440TCONS_00004227-exon-sc0000041-1575043694:220344..220440Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:220576..220674TCONS_00004227-exon-sc0000041-1491911889:220576..220674Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:220576..220674TCONS_00004227-exon-sc0000041-1510915933:220576..220674Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:220576..220674TCONS_00004227-exon-sc0000041-1575043694:220576..220674Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:220814..220988TCONS_00004227-exon-sc0000041-1491911889:220814..220988Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:220814..220988TCONS_00004227-exon-sc0000041-1510915933:220814..220988Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:220814..220988TCONS_00004227-exon-sc0000041-1575043694:220814..220988Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:221583..221671TCONS_00004227-exon-sc0000041-1491911889:221583..221671Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:221583..221671TCONS_00004227-exon-sc0000041-1510915933:221583..221671Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:221583..221671TCONS_00004227-exon-sc0000041-1575043694:221583..221671Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:222042..222109TCONS_00004227-exon-sc0000041-1491911889:222042..222109Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:222042..222109TCONS_00004227-exon-sc0000041-1510915933:222042..222109Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:222042..222109TCONS_00004227-exon-sc0000041-1575043694:222042..222109Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:222314..222364TCONS_00004227-exon-sc0000041-1491911889:222314..222364Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:222314..222364TCONS_00004227-exon-sc0000041-1510915933:222314..222364Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:222314..222364TCONS_00004227-exon-sc0000041-1575043694:222314..222364Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:222522..222620TCONS_00004227-exon-sc0000041-1491911889:222522..222620Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:222522..222620TCONS_00004227-exon-sc0000041-1510915933:222522..222620Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:222522..222620TCONS_00004227-exon-sc0000041-1575043694:222522..222620Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:222901..222947TCONS_00004227-exon-sc0000041-1491911889:222901..222947Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:222901..222947TCONS_00004227-exon-sc0000041-1510915933:222901..222947Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:222901..222947TCONS_00004227-exon-sc0000041-1575043694:222901..222947Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:223293..223428TCONS_00004227-exon-sc0000041-1491911889:223293..223428Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:223293..223428TCONS_00004227-exon-sc0000041-1510915933:223293..223428Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:223293..223428TCONS_00004227-exon-sc0000041-1575043694:223293..223428Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:223595..223664TCONS_00004227-exon-sc0000041-1491911889:223595..223664Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:223595..223664TCONS_00004227-exon-sc0000041-1510915933:223595..223664Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:223595..223664TCONS_00004227-exon-sc0000041-1575043694:223595..223664Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:223795..223851TCONS_00004227-exon-sc0000041-1491911889:223795..223851Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:223795..223851TCONS_00004227-exon-sc0000041-1510915933:223795..223851Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:223795..223851TCONS_00004227-exon-sc0000041-1575043694:223795..223851Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:224127..224222TCONS_00004227-exon-sc0000041-1491911889:224127..224222Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:224127..224222TCONS_00004227-exon-sc0000041-1510915933:224127..224222Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:224127..224222TCONS_00004227-exon-sc0000041-1575043694:224127..224222Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:224726..224859TCONS_00004227-exon-sc0000041-1491911889:224726..224859Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:224726..224859TCONS_00004227-exon-sc0000041-1510915933:224726..224859Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:224726..224859TCONS_00004227-exon-sc0000041-1575043694:224726..224859Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1491911889:226276..226858TCONS_00004227-exon-sc0000041-1491911889:226276..226858Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1510915933:226276..226858TCONS_00004227-exon-sc0000041-1510915933:226276..226858Clytia hemisphaericaexon
TCONS_00004227-exon-sc0000041-1575043694:226276..226858TCONS_00004227-exon-sc0000041-1575043694:226276..226858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:217454..226858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0235746 0.0628985 0 0.0121638 0 4.82864e-10 0.00182341 5.63509e-05 0.0210742 0.139909 9.4952e-05 0.00398032 0.00176946 5.4635e-07 7.49645 0.136909 0.0718378 0.85924 0 0 0.00146112 1.23837 0.0231309 0.00188919 0.264336 0.0412304 10.2174 14.1589 0 0
Blast
BLAST of TCONS_00004227 vs. Swiss-Prot (Human)
Match: PH4H (Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1)

HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 250/424 (58.96%), Postives = 319/424 (75.24%), Query Frame = 3
Query:  381 NVNDTNTPCIVFSLPEEVGVLADALKIFKKRQINLKHIESRPSKSNKKDYEFYVDIDAET--ANSESVKLVVEDLKSKAKSVVL-HNEESVPWFPRKIADLDKFADRVLSYGSELDSEHPGFTDPVYRARRKEFADIAIKYRHGEPLPRVTYTEDEISVWNTVFSELTKLFPKYACREVNFMLPLLVENCNYRIGAIPQLEDVSKFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHAKTPMYTPEPDCVHELIGHVPLFADPSFAQFSQEIGLASLGAPDEWIEKLATLYWFTVEFGLCRQDGEIKAYGAGLLSSFGELQYCVSDKPEHLAFDPEKTSQTKYPITEFQPRYFVAESFEDAKEKVRAWSTKIPRPYQVHYNPYTQTVEVLDTQDRIINVVTNVKSDLDVLHAALKKM 1643
            N N      ++FSL EEVG LA  L++F++  +NL HIESRPS+  K +YEF+  +D  +  A +  +K++  D+ +    +     +++VPWFPR I +LD+FA+++LSYG+ELD++HPGF DPVYRARRK+FADIA  YRHG+P+PRV Y E+E   W TVF  L  L+  +AC E N + PLL + C +    IPQLEDVS+FL+ CTGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH   PMYTPEPD  HEL+GHVPLF+D SFAQFSQEIGLASLGAPDE+IEKLAT+YWFTVEFGLC+Q   IKAYGAGLLSSFGELQYC+S+KP+ L  + EKT+   Y +TEFQP Y+VAESF DAKEKVR ++  IPRP+ V Y+PYTQ +EVLD   ++  +  ++ S++ +L +AL+K+
Sbjct:   28 NCNQNGAISLIFSLKEEVGALAKVLRLFEENDVNLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGILCSALQKI 451          
The following BLAST results are available for this feature:
BLAST of TCONS_00004227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PH4H0.000e+058.96Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH... [more]
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