TCONS_00004421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004421
Unique NameTCONS_00004421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004421 ID=TCONS_00004421|Name=TCONS_00004421|organism=Clytia hemisphaerica|type=transcript|length=2280bp
cagaactcagaaaataaaaaagttaacaaaatgATGCCTAATGCAAAGCG
TCAAAAAGTGGCAGTGAATAAAGATGATGAAATATCTCAACGAGGGACAA
AACAATCAAATATTCCATCCTTGATGGATTTAACCTTTGGAAATAAGGTA
CAAAATCTGGAAACAACTGAGACCAATCTTGGTGCACGAGTACAACCTCC
GAAGAAACCTCCAAGTGGTGTACAGCGAAAGAAGACTGGCAAACAGGCCA
AAAGAAGGGAAGCCTTccagaaaattattaaagaagaTGTTTCAGCTCAA
ATTGATACTAATCAGAAATTGAGAGGAAGAGGGAAAAATGTTCTACAAAA
AATGGAAGGTGCCACAAATGGTCCATTGAGTGTCCTTCACGATTGCATGC
AATATGGTATCAAAGCGAAAGTTTGGGTCAGGCGTTACAAGGGTTTACGT
GGTTGTTTGACTGGATATATTGCTGCTTTTGACCATCATATGAACCTGGC
TTTGATTGACGTGGAAGAAGTCTATACATTAGAAACATGGATGGTTGGCG
AACCGTtgaagaaataccaaaaaaaagtcttaaaaaaacGTGAAGAAAAG
TGTCAACTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACCGTCTAC
AGGCGCTACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATTATCTGA
AGAAACTAACGCAGTCTTTGCGACAAAATACATCATCTCCTACATTGTTT
GCCAACCTTCACCGAAACTCAGCAATGACAACCAATAAGCCATTAGAACA
AGAACGAAAAATCGTAAGTGGGCCAACAGTCGATAAAAACCCAGACTCCA
CCATAGATAAGGATTCTAATATTGCTGTTAAAACTTCTCACATAGTTAAA
TCAGCCAAACCAGAAATTGTTACTGGTCCACGCTTACACACATCGAATGA
CACTCTTACCAACCGAAACATTGATAAAAGTTCGCAAGAGAATAGAAGTT
CCGTTGTTCTTCAACCTTTAGATGAAGACGCTTCTAACAAATGCCAAAAT
GTTACCAAAAACATCTTATCAGATCCGCGGAGTCATAGAAAGGACAAGAA
TGTCGATAAACTCGCGAAACAACCTTCAGAAATCGATCCTTCGCAAGAAG
CTAAACCTAATAATGATATATGGTCTGTTTTAAAGGGCATAGACTTTGAT
TCGTTGACGAAAAAAGTTTTAACGGTTAACAAAGAAACAAAAGTTGAGGA
CAGTGTGACAATACCTTCCAACAAGGAAGTTAACTTGGACACTGAAACGG
GAAACTCGAACCTTCAGAAAACATATAAAACAGATTGCTCTAATGAAGCA
AATTTAAAGAATTCAAAAGGgattttccacaaaataccgCTTGAACTTCA
AGCAATGGATTTTACACGGGGATTGAGCCTGGATCCTCTTCATCCTGATC
CGAGGCTAAGACCAAGAGAAgtgtttaagaaatattctcAGACTTCGAAA
TTGAAACCAAAGAAAGATAGTACTACGGAGAAAAAAAATACTGACATGCC
TTTCTCAATTCAAGCACACCAATCTAACAAAAAGAAACACATGGAACATT
CTAACAAGCCACAGCtagaagaaaatttaaaagaacgacCGTGTGATACT
GAGAAACAACTGTCGAACGAGGATAAAGTATCACTTCCAAAGGAAAAACG
ACCATTAAAAAGTAAAGGACTTTCATTGGACAAAAAACGACCACTCTGCG
AGGAACGAACTTCTACCAAGGAGCAACGAGTACTTGATGACAAACGACCG
AACGAACAAGGAACTCTAGATAAATCGAAGTCATTCATTGATAAGACACC
TTtagaagaaaaacaacaaactttAGAAGATGGAaaacaaaaagtagaaa
atgaTGAACCACTTCATCCCAAGGGATTGTTCGAACAATCGAGAATAGCT
ATAGAACGTAGTATTAAACCATCCGTAACAACTCAAAAATTACCCGACGA
TAGAACATTGCAACCTGAGGAAACGAGAACATTGCAACCTAAGGAAACGA
GAACATTGCAACTTGAGAAACCTGAACGACGAGCCAACAAACAAAAACTG
CAACCAGTCAAACTAATCAAAGCATCCTTCGATAGTAAAGAACTTCTCGA
TATTCCTTTACCTTCGAAACTCGATTTGAGCCTATTTTCTGATGACTCTC
AAGAATCACGTGTTGAAAATGAAGTTATTCTATTGGACAAATCTCATGAT
GTGACCAATGAAAACCCAGCAAAAATGACA
Run BLAST on NCBI

transcript from alignment at sc0000044:556425..561160-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004421 ID=TCONS_00004421|Name=TCONS_00004421|organism=Clytia hemisphaerica|type=transcript|length=4736bp|location=Sequence derived from alignment at sc0000044:556425..561160- (Clytia hemisphaerica)
CAGAACTCAGAAAATAAAAAAGTTAACAAAATGATGCCTAATGCAAAGCG
TCAAAAAGTGGCAGTGAATAAAGATGATGAAATATCTCAACGAGGGACAA
AACAATCAAATATTCCATCCTTGATGGTATGTGCTAGAAGGCCTGAAATT
TCTATAGAAGCTTTTGATTTTCCATATGCTATAGGTTTGGTTATTTATGA
GAAGAGAATTGACCCAAATCCTATTTTAAAAATGTTGTAACTATAGCTTT
GGAATATTTGGCTCTATTTTATGTTTATTATTTATTATAGAGTGAATAAT
ACAAGCGGTTTGGGGGCTGTTGAATCAAAGTTATACCAAAAAAGTATTGG
ACAGACTAGACTGAATCTCACTCTAGATTTTTGTTGCTAAAAACTAAATA
TTTTTTATGCACAGGATTTAACCTTTGGAAATAAGGTACAAAATCTGGAA
ACAACTGAGACCAATCTTGGTGCACGAGTACAACCTCCGAAGAAACCTCC
AAGTGGTGTACAGCGAAAGAAGACTGGCAAACAGGCCAAAAGAAGGGAAG
CCTTCCAGAAAATTATTAAAGAAGATGTTTCAGCTCAAATTGATACTAAT
CAGAAATTGAGAGGAAGAGGGAAAAATGTTCTACAAAAAATGGAAGGTGA
TTATTTCGATTTTTGTCCCTGAAGAAGCTAAAATGCTAGAAAGAAATCCC
TAAAAGGGTCCTAAAATCCCCTTTGCCTCGATTTTTGACCCAAAATTTCC
AGATTTTTAAAACTCAGGGTCAGGAGGCGCCAACGCGTCACCTGGCAAAC
CCAGTACCCCCAGGATTTCTTTCTTTCTTGTAGGTGCCACAAATGGTCCA
TTGAGTGTCCTTCACGATTGCATGCAATATGGTATCAAAGCGAAAGTTTG
GGTCAGGCGTTACAAGGGTTTACGTGGTTGTTTGACTGGATATATTGCTG
CTTTTGACCATCATATGAACCTGGTAAGATTTTAAAACATAGAGCTCTTT
TTTTTAGTCCAGGATGTGTAACTCAACACCCCCTGCTACACGCTTTTTTT
TTTATAAGAATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAA
ATTAAGAATATGGTAAGAATATCACCATCATGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAGCGTTTAATTCCAACCCC
ACTTATTAAGTTTTGAGATTTTTTCCAAGCCCACGCTTTTTCTAATACAC
TGTCTATTAGGTACCCGGGAGTACTTATTAACAGGCTATGTATGAATTGA
AAATTTCCTTTATGCTGTCGCATAAAGTTAAGAGAGTGTTGGTTCTGCGA
CTCGTGCCAAATCTTAGAAAATGACACTTGGTGTCTCATCTTAATACTAA
ACGCTTGAAGTTAAGGTGGGTTCAATGGTAAACTAGGGGAGGAGACGCAC
TCTTTCCTAATTTGGGAAGATAGCTAAGGAAAGGAGGGGTTTAAAGGTCG
CCCTCGGCTGCGGATGGAAACCTTTACTTACAGTTATTATAATTCTAATG
CTCGCTCAACAGTCAAATGAAAATATTTTTGCTGAAAAAGCAAATTACCG
AATATTTCGAGATATGAACCAATCTGGTTACTCATAAAAACTGTTCAACA
AAACCTTTTTTTGCCAGTTTGGTTTTTAACTTATTTTAAAGTGGCTGTAC
CGCAGAACTTCCTTAAGTGGATTAACTTCGGCGGGGATTTAATTCCGATT
GATCAATTCTGTAAAAATTGCTGGGGATTTTTTAAAATTTGGCGAATTGG
GAATTTGGTGACACTAAAATGGATGAAAGTTACTATAAAATATACTAAAA
AGGTTTGATTATTCACATAATGTTCTTTTTGTTAAATTTAGCGGGAATTT
AATTTGGCGAGTGGCCGATTTTTGAGAAATTTTGGCCAAATTTGATCCCC
GCCAAAATTAATCCATTTAAAGGGCTCTGACCATAGTCGAAAAATTGATT
TTAGTATGTAAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTGGAAT
TGCCTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAAT
TTAATTGCAAAAATGACGTTATGAACTTTAAAAAGACGTTAATAATATGT
TGCATCGTTGCATCACCTTCTTTTATAAAAAGTGTTGGGTAATTAACTTT
TTTGTTTCGAATTTTTTTTAAAACTGTCCGCAAAGAATTGAACTGTTTTA
CATTTTTTGGAAAAATTTTCTAAATTAATGCATCAAAAGTTATGGCTGTT
GAACTATGAAAAATTGGGATGGAAAACGGGTCAAAAAGCACTATTTTCAA
GATTTTGAAGCAAATAAGCTTTTAGAAAAATTTTCCGAAGAAATAGTTTT
AGTTCGATAAAAGATACACCATATACAGCAAAAAAAAAATTCAAAATATT
TTTTCTTTGCCGAAACTAAGCTCTTCAAAGTTGAAATACTCTTCTTCGCA
AAAGTCTTCATTTTCTTTTCTAGAACTTTATATTTTGTAAGTGGCAAATA
TTAAAAATTCACTATGGTCAGAGCCCTTTAAGGTATCCGAAATTTTACGA
TTTTGGCGCGTTTGATATTTGAGTAAACTTTTGTTTAGTCATCCGTGAGT
ACAGTATGTTTATGTACACATATAGATTTTATCAAAGAGTTTTATGTGTT
TTAGGCTTTGATTGACGTGGAAGAAGTCTATACATTAGAAACATGGATGG
TTGGCGAACCGTTGAAGAAATACCAAAAAAAAGTCTTAAAAAAACGTGAA
GAAAAGTGTCAACTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACC
GTCTACAGGCGCTACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATT
ATCTGAAGAAACTAACGCAGTCTTTGCGACAAAATACATCATCTCCTACA
TTGTTTGCCAACCTTCACCGAAACTCAGCAATGACAACCAATAAGCCATT
AGAACAAGAACGAAAAATCGTAAGTGGGCCAACAGTCGATAAAAACCCAG
ACTCCACCATAGATAAGGATTCTAATATTGCTGTTAAAACTTCTCACATA
GTTAAATCAGCCAAACCAGAAATTGTTACTGGTCCACGCTTACACACATC
GAATGACACTCTTACCAACCGAAACATTGATAAAAGTTCGCAAGAGAATA
GAAGTTCCGTTGTTCTTCAACCTTTAGATGAAGACGCTTCTAACAAATGC
CAAAATGTTACCAAAAACATCTTATCAGATCCGCGGAGTCATAGAAAGGA
CAAGAATGTCGATAAACTCGCGAAACAACCTTCAGAAATCGATCCTTCGC
AAGAAGCTAAACCTAATAATGATATATGGTCTGTTTTAAAGGGCATAGAC
TTTGATTCGTTGACGAAAAAAGTTTTAACGGTTAACAAAGAAACAAAAGT
TGAGGACAGTGTGACAATACCTTCCAACAAGGAAGTTAACTTGGACACTG
AAACGGGAAACTCGAACCTTCAGAAAACATATAAAACAGATTGCTCTAAT
GAAGCAAATTTAAAGAATTCAAAAGGGATTTTCCACAAAATACCGCTTGA
ACTTCAAGCAATGGATTTTACACGGGGATTGAGCCTGGATCCTCTTCATC
CTGATCCGAGGCTAAGACCAAGAGAAGTGTTTAAGAAATATTCTCAGACT
TCGAAATTGAAACCAAAGAAAGATAGTACTACGGAGAAAAAAAATACTGA
CATGCCTTTCTCAATTCAAGCACACCAATCTAACAAAAAGAAACACATGG
AACATTCTAACAAGCCACAGCTAGAAGAAAATTTAAAAGAACGACCGTGT
GATACTGAGAAACAACTGTCGAACGAGGATAAAGTATCACTTCCAAAGGA
AAAACGACCATTAAAAAGTAAAGGACTTTCATTGGACAAAAAACGACCAC
TCTGCGAGGAACGAACTTCTACCAAGGAGCAACGAGTACTTGATGACAAA
CGACCGAACGAACAAGGAACTCTAGATAAATCGAAGTCATTCATTGATAA
GACACCTTTAGAAGAAAAACAACAAACTTTAGAAGATGGAAAACAAAAAG
TAGAAAATGATGAACCACTTCATCCCAAGGGATTGTTCGAACAATCGAGA
ATAGCTATAGAACGTAGTATTAAACCATCCGTAACAACTCAAAAATTACC
CGACGATAGAACATTGCAACCTGAGGAAACGAGAACATTGCAACCTAAGG
AAACGAGAACATTGCAACTTGAGAAACCTGAACGACGAGCCAACAAACAA
AAACTGCAACCAGTCAAACTAATCAAAGCATCCTTCGATAGTAAAGAACT
TCTCGATATTCCTTTACCTTCGAAACTCGATTTGAGCCTATTTTCTGATG
ACTCTCAAGAATCACGTGTTGAAAATGAAGTTATTCTATTGGACAAATCT
CATGATGTGACCAATGAAAACCCAGCAAAAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002471XLOC_002471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004421-exon-sc0000044-1575043694:561035..561160TCONS_00004421-exon-sc0000044-1575043694:561035..561160Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1575043694:560515..560746TCONS_00004421-exon-sc0000044-1575043694:560515..560746Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1575043694:560188..560327TCONS_00004421-exon-sc0000044-1575043694:560188..560327Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1575043694:556425..558206TCONS_00004421-exon-sc0000044-1575043694:556425..558206Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1510915933:561035..561160TCONS_00004421-exon-sc0000044-1510915933:561035..561160Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1510915933:560515..560746TCONS_00004421-exon-sc0000044-1510915933:560515..560746Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1510915933:560188..560327TCONS_00004421-exon-sc0000044-1510915933:560188..560327Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1510915933:556425..558206TCONS_00004421-exon-sc0000044-1510915933:556425..558206Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1491911889:561035..561160TCONS_00004421-exon-sc0000044-1491911889:561035..561160Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1491911889:560515..560746TCONS_00004421-exon-sc0000044-1491911889:560515..560746Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1491911889:560188..560327TCONS_00004421-exon-sc0000044-1491911889:560188..560327Clytia hemisphaericaexon
TCONS_00004421-exon-sc0000044-1491911889:556425..558206TCONS_00004421-exon-sc0000044-1491911889:556425..558206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:556425..561160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21828	1.23618	0.416545	0.404494	1.40921	1.40566	0.682752	0.804135	0.274279	1.1265	0.84932	0.676669	0.600358	0.28718	0.778192	0.970826	0.974187	0.777683	0.5125	0.622872	0.910963	1.10125	0.918808	1.09214	1.78038	2.21584	0.427197	0.235615	1.0248	1.20107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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