|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004376 ID=TCONS_00004376|Name=TCONS_00004376|organism=Clytia hemisphaerica|type=transcript|length=2209bpRun BLAST on NCBI protein sequence of TCONS_00004376-protein >TCONS_00004376-protein ID=TCONS_00004376-protein|Name=TCONS_00004376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp MDLNIDLRQSLQCMRKNDEMCDVCILSKEGTKYPAHKLILAASSPVFKVMRun BLAST on NCBI transcript from alignment at sc0000044:775497..781080+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004376 ID=TCONS_00004376|Name=TCONS_00004376|organism=Clytia hemisphaerica|type=transcript|length=5584bp|location=Sequence derived from alignment at sc0000044:775497..781080+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:775497..781080+ >TCONS_00004376 ID=TCONS_00004376|Name=TCONS_00004376|organism=Clytia hemisphaerica|type=CDS|length=5490bp|location=Sequence derived from alignment at sc0000044:775497..781080+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004376 vs. Swiss-Prot (Human)
Match: KLHL5 (Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2 SV=3) HSP 1 Score: 178.333 bits (451), Expect = 2.054e-72 Identity = 97/348 (27.87%), Postives = 187/348 (53.74%), Query Frame = 2
Query: 107 KNDEMCDVCILSKEGTKYPAHKLILAASSPVFKVMVTKDFKELQSKEIHLRDIEDSLMTTILDFMYTGELSMTNENALDLFMLADRMELANLFTSCTRYIKDHIDANNCLGVQQIAERYNQLKLNDFAESYLLRHFQVFASTEDFLDLTSSELIKILWRDELNVEKEEYLIDFILKWVDHDLENRNGELEKLMKGLRFPLMNFDFIEGKFRTHPRWKTNKKMAKLVKTIYKGCFQIFHRINFDPYPSLKCLRYQYRLPS-QVIFLYGGWNRGRTLDTTECFNIKTGYWSPASHLKDETEGRSYFGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRR 1147
++ ++CDV IL + PAH+L+L++ S F M T D +E + +EI + +E + + +++ + YTG L + +N L A ++L+ + +C +++ + +NCLG++ A+ L+ A +Y + HF ++F+ L +SE+ K+L D++N+ EE +++ +L WV HDLE R +L KL+ +R PL+ F+ + ++ + + KL+ K +H + + P L+ R + R + +F GG + + + E ++++T W+P +++ R FG+ L+ ++Y+ GG +G LNT+ +NP TK W+ + PM R
Sbjct: 215 RHKQLCDV-ILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFL-ADMENNVLFRDDIECQKLIMEAMK-----YHLLP-ERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGR---RLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHR 551 HSP 2 Score: 114.39 bits (285), Expect = 2.054e-72 Identity = 64/206 (31.07%), Postives = 99/206 (48.06%), Query Frame = 3
Query: 1149 FGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRRCFTSALAYNSNLYVLAGFDGVRRLTSVEKYCPKNKQWTVISPLNVPRSDAAAVVHRGRMYIFGGYAGDALN-------SGEIYDAERDNWTHITNMNVKRSGASAVSFPEENKIMVIGGYNGTSRVATVEIYDPVTNRWTIGPPMSQERSNFATCVIENKL 1745
G+ L G +Y GG++G SYLNT+ +++P ++W + M R + LY + G DG L SVE + P +WT+ + ++ R G +Y GG+ A N E YD + D WT + +M++ R + K+ +GGY+G + + TVE YDP TN WT P+ R+ CV+ KL
Sbjct: 554 LGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGD--KLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPLCLGRA--GACVVTVKL 755 HSP 3 Score: 145.976 bits (367), Expect = 1.580e-36 Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 3
Query: 1149 FGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRRCFTSALAYNSNLYVLAGFDGVRRLTSVEKYCPKNKQWTVISPLNVPRSDAAAVVHRGRMYIFGGYAGDA-LNSGEIYDAERDNWTHITNMNVKRSGASAVSFPEENKIMVIGGY-----NGTSRVA-TVEIYDPVTNRWTIGPPMSQERSNFATCVIENKLYVMGGYTGSTTLRDVEIFDLKDNTWQFGRPIGAGRS 1853
FG+ L+ ++Y+ GG +G LNT+ +NP TK W+ + PM R +Y + G DG L +VE++ P+ +QW ++ ++ PRS V G++Y GG G + L S E +D + WT M+ +R G ++ + IGG+ N TSR++ VE YDP T+ WT MS R C++ +KLY +GGY G L VE +D + N W P+ GR+
Sbjct: 507 FGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTW--NGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPLCLGRA 746 HSP 4 Score: 26.5646 bits (57), Expect = 1.580e-36 Identity = 11/39 (28.21%), Postives = 19/39 (48.72%), Query Frame = 2
Query: 1034 GEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRRL 1150
G ++ GG + +I K++ T W + M+ RRL
Sbjct: 467 GTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRL 505 HSP 5 Score: 119.783 bits (299), Expect = 8.705e-28 Identity = 75/244 (30.74%), Postives = 119/244 (48.77%), Query Frame = 3
Query: 1170 GEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRRCFTSALAYNSNLYVLAGFDGVRRLTSVEKYCPKNKQWTVISPLNVPRSDAAAVVHRGRMYIFGGYAG-DALNSGEIYDAERDNWTHITNMNVKRS--GASAVSFPEENKIMVIGGYNGTSRVATVEIYDPVTNRWTIGPPMSQERSNFATCVIENKLYVMGGYTG-----STTLRD-VEIFDLKDNTWQFGRPIGAGRSAMKAICL 1874
G ++ GG + +I K++ T W + M+ RR + LYV+ G DG++ L +VE Y PK K W+V+ P++ R V G MY GG+ G LN+ E +D + W + M+ RS G + +S K+ +GG +G+S + +VE +DP TN+WT+ MS+ R LY +GG+ ++ L D VE +D K + W + R A+ +CL
Sbjct: 467 GTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLS----GKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMWTAVASMSISRDAV-GVCL 705 The following BLAST results are available for this feature:
BLAST of TCONS_00004376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.