TCONS_00046109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046109
Unique NameTCONS_00046109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046109 ID=TCONS_00046109|Name=TCONS_00046109|organism=Clytia hemisphaerica|type=transcript|length=561bp
NNCACATTAGAACATAGATAGGATAGAAATAAAAGTTTACTGACTAAATA
CAAACCAAAATAGATACTAACTAAAAAAGTTTTCCACGACACCAAAACAA
GCACACCAAAAATTGGACTTCACATCACATACACAACATTACTACTGTTa
cataaaagttgaaaattcgTTTACAATTTAATTCATACGCCTCAAAATTC
TACAATTCCCTAATGACCTAATTATATACATTATAAATATTACTAAGATG
ACACACAAAAGACGCAATAAAATCGAATACACTGAAGACAATGAGACGCA
ATCCCAAGTGACTAATGAcgtaatataaaattaaaacatatcaaaacaaa
gGCCAGCGGCCGTCAcaaacacaattatcattgtgaatatgtaattttat
agcaatgaaatctgtttgaaaacgaggacaacaataaatttatgcatctc
gagaagagtgtattatccgtgtgtctgaaaatttaagaatcgcaatgaaa
aaacttgatgaagaagaaaatgaagacttttgcgaagaagagtattacAA
CTTTGAAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_105:396608..397168

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046109 ID=TCONS_00046109|Name=TCONS_00046109|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at scaffold_105:396608..397168 (Clytia hemisphaerica)
GCTTTTCAAAGTTgtaatactcttcttcgcaaaagtcttcattttcttct
tcatcaagttttttcattgcgattcttaaattttcagacacacggataat
acactcttctcgagatgcataaatttattgttgtcctcgttttcaaacag
atttcattgctataaaattacatattcacaatgataattgtgtttgTGAC
GGCCGCTGGCctttgttttgatatgttttaattttatattacgTCATTAG
TCACTTGGGATTGCGTCTCATTGTCTTCAGTGTATTCGATTTTATTGCGT
CTTTTGTGTGTCATCTTAGTAATATTTATAATGTATATAATTAGGTCATT
AGGGAATTGTAGAATTTTGAGGCGTATGAATTAAATTGTAAAcgaatttt
caacttttatgtAACAGTAGTAATGTTGTGTATGTGATGTGAAGTCCAAT
TTTTGGTGTGCTTGTTTTGGTGTCGTGGAAAACTTTTTTAGTTAGTATCT
ATTTTGGTTTGTATTTAGTCAGTAAACTTTTATTTCTATCCTATCTATGT
TCTAATGTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029453XLOC_029453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046109-exon-scaffold_105-1491911889:396608..397168TCONS_00046109-exon-scaffold_105-1491911889:396608..397168Clytia hemisphaericaexon
TCONS_00046109-exon-scaffold_105-1510915933:396608..397168TCONS_00046109-exon-scaffold_105-1510915933:396608..397168Clytia hemisphaericaexon
TCONS_00046109-exon-scaffold_105-1575043694:396608..397168TCONS_00046109-exon-scaffold_105-1575043694:396608..397168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:396608..397168 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.31055	5.66508	5.65507	4.95971	5.42628	2.36886	2.56888	1.94436	1.88143	2.65643	1.05311	1.83076	2.54933	2.04202	1.5899	1.79597	0.83575	1.2264	2.49834	2.76578	4.20434	2.90582	2.72531	2.89223	2.06468	1.88641	2.96145	5.94871	1.79656	1.83364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top