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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004560 ID=TCONS_00004560|Name=TCONS_00004560|organism=Clytia hemisphaerica|type=transcript|length=3164bpRun BLAST on NCBI protein sequence of TCONS_00004560-protein >TCONS_00004560-protein ID=TCONS_00004560-protein|Name=TCONS_00004560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=843bp MDFITEQDADNQNSLMNFSSSRLNIVADSDEEDHHHQQSPGEEMENMNENRun BLAST on NCBI transcript from alignment at sc0000045:567234..582589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004560 ID=TCONS_00004560|Name=TCONS_00004560|organism=Clytia hemisphaerica|type=transcript|length=15356bp|location=Sequence derived from alignment at sc0000045:567234..582589- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000045:567234..582589- >TCONS_00004560 ID=TCONS_00004560|Name=TCONS_00004560|organism=Clytia hemisphaerica|type=CDS|length=45576bp|location=Sequence derived from alignment at sc0000045:567234..582589- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004560 vs. Swiss-Prot (Human)
Match: TPC1 (Two pore calcium channel protein 1 OS=Homo sapiens GN=TPCN1 PE=1 SV=3) HSP 1 Score: 217.238 bits (552), Expect = 1.206e-58 Identity = 182/690 (26.38%), Postives = 352/690 (51.01%), Query Frame = 2
Query: 536 EQPAVHGFALPYWATMSMELICITIYCLRLAQAWKFMPLKRHWKDRKXXXXXXXXXXXXXDMAVFIILYQMKITTFNIRWSRILRPAFIVNFSESXXXXXXXXXXXXXLPEISSXXXXXXXXXXXXXXXGVKLFENRGIVNIATGKPFFTNFWDAYFDLYVLTTTANNPDIMIPAYNRSNWYSLFFIIFTIICMYIFVSIFLAVVYKNYRTHLKNEVKTVVYRKRRNMKSAFDQXXXXXXXXXXXTFQRWKQLIHYMKPTMSPVQVILFWRVLDENDQGFIEFKQFLHISDLLHVKMDTISSRGHLFERTLSS--FYFSKVSTFIRDCVNHKLFVIFFDLVIIVNAFCIAL-------------NLESTDMIFIVLFNIEILLKLYTVGPSEFASKFWNIFDTLVIEAATLVYILEAIFQVLRYSQFILDFLLILRVIRLFKIIGNIKRFRVIINTIMEIGPAILTYGGIMFVLYYVYAIIGMELFHARVQDYGN-VDFNNLTDMQRWCGTTKLNGSEFSRLFYCEKNFNNIIKSYMVLFDLTVVNQWHVITDGFVRVTHKAARFYFFSFHMLCVIVVLNIFVAFILEAFMLQYSLSKGNFEAAFEKKIQEKGRASSSMQGTGQENHQNTEDCDIISNPLATSNSLQRLDLNFSINEYMTQSGMKFRLRKTRTKKAELLLQQMFEDELDE 2557
E PAV L + ++EL + + L +++ L + ++ ++ +++ V+ A+ +++ QM ++R +R LR F+V+ VRR +R I ++LP +L+L L + ++A+LG LF P+F+ ++ L+VL TTAN PD+M+P+Y+R+ W +FFI++ I +Y +++ LAVV+ + K + K+++ KR ++ A+ ++ + + +++++++ L+ + KP MS + L ++ L++N+ + K F I ++ +K +R H F+ + F ++ ++ K F F LV+ VN I + ++ + ++F+ ++ +E+ LK+ +GP E+ S WN+FD V T+ L + L F F+++LR ++L ++ +R+R +++T+ E+ P + + G + + YY +AI+GME F V + N + + + D RW T N + +Y NF+NI+ S++ LF+LTVVN W++I +G T +R YF +F+++ +VV+ I VAFILEAF+ + + S+ N ++ + I + S + ++ S+ + RL S E Q M F R++RTK L +M+++E+ E
Sbjct: 126 EAPAVPALRLGIYVHATLELFALMVVVFELCMKLRWLGLHTFIRHKRTMVKTSVLVVQFVE-AIVVLVRQMS----HVRVTRALRCIFLVDCRYCGGVRRNLRQIFQSLPPFMDILLLLLFFMIIFAILGFYLFSPN------PSDPYFSTLENSIVSLFVLLTTANFPDVMMPSYSRNPWSCVFFIVYLSIELYFIMNLLLAVVFDTFNDIEKRKFKSLLLHKRTAIQHAY-RLLISQRRPAGISYRQFEGLMRFYKPRMSARERYLTFKALNQNNTPLLSLKDFYDIYEVAALKWKAKKNREHWFDELPRTALLIFKGINILVKS----KAFQYFMYLVVAVNGVWILVETFMLKGGNFFSKHVPWSYLVFLTIYGVELFLKVAGLGPVEYLSSGWNLFDFSV----TVFAFLGLLALALNMEPFY--FIVVLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIV--FPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYYLNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIV-TMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS---------KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSD--LSLKMYQEEIQE 779 The following BLAST results are available for this feature:
BLAST of TCONS_00004560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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