TCONS_00046664 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046664
Unique Name	TCONS_00046664
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	927

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_116:609553..616369+

transcript sequence

>TCONS_00046664 ID=TCONS_00046664|Name=TCONS_00046664|organism=Clytia hemisphaerica|type=transcript|length=927bp
taattaatactTTTTTCTCTATCTAGagcaaaatgttaaaaagaaaattt
atggaTTGCTAATTTGTTGGGAAAGGAATTTAGAATTATTATCTGTTTTT
ATTACAATTGGCAAATCATAAAGAAATCATGGCAATGAATTTTTTCCGCA
AACGCTCAAAGCCAGATGGGGTGGGAAATGACTGGAAAGCTACTGGAAGC
TTTGTTCGGAAACCTGTAAAAGGATGGCTTCATTCTGACCGTTTGCTGGA
AAGTTCAGGTGTCACatatgaagcaaagTATATTGGAGCTGTCAAGATTA
TTGAGTCCATGAGAAACGTACCATTTGAGCATAGAGGTGCTGTTGTAAGG
GAAGCAATATCAAGGTGTTGTCTACAAAGCAAACTCTTCAATTTCAAGCC
TAGCAAGATATCTGTGACGCATGGAGTAGTAGGAGATGTTGATTTACAGA
ACTGTGGCGACAAATCTATGATCACATTCTCCAAGACCACAGTCAAAGCT
TTTGTTTTGGAATCCGGTGTTCAACTATTTCAACATCCCATGGAGAGCAT
CTCATTTGCAAGCTTAGGAGAGGGAcaaTATGAAAATCTGGTGGCATATG
TAGCAAAAGATAGTCGGCTTGAAAGAGGTTGTTTCATTTTCGAGTGTGCA
CCTGGGCTAGCCAACGACCTGATCTTGACCATCGGGCAAGCATTTGAACT
GAAATATAAAGATTTCCTGAATAAAAATCCTGTCATCCAACCCGTTGTCG
CAAGATTTGGTGACCCGTCGAGTGCTTTAAATGCTCAAGTACAGAACAGA
TATGAAGATACCACACCTAAAGAACATACCTATTCAAATCATCATGATTT
TGAGGGTGCGACGGCCCCAGAGATGGACTACGACCATCTTGCAAACAATA
ATAAACGACTCGAAACTCAGGAAGAAC

Run BLAST on NCBI

transcript from alignment at scaffold_116:609553..616369+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046664 ID=TCONS_00046664|Name=TCONS_00046664|organism=Clytia hemisphaerica|type=transcript|length=6817bp|location=Sequence derived from alignment at scaffold_116:609553..616369+ (Clytia hemisphaerica)
taattaatactTTTTTCTCTATCTAGagcaaaatgttaaaaagaaaattt
atggaTTGCTAATTTGTTGGGAAAGGAATTTAGAATTATTATCTGTTTTT
ATTACAATTGGCAAATCATAAAGAAATCATGGCAATGAATTTTTTCCGCA
AACGCTCAAAGCCAGATGGGGTGGGAAATGACTGGAAAGCTACTGGAAGC
TTTGTTCGGAAACCTGTAAAAGGATGGCTTCATTCTGACCGTTTGCTGGA
AAGTTCAGGTGTCACatatgaagcaaaggtaaaatTTAATTCCTCTAGAC
ATTTTATATAAATATTATTAGAGGTTGGACTTTTTATAATTGGGAAAAGG
CAGACCCCTATTCCATACAATTTTAGTATAATCATATATACCAACACaat
tatcaagaaaaaaaaaaacaacaaattactGTAATGGTCGAGAGGAATTC
AAACTTTAATATTTCGATACTTTCAAGTGtctttttatttagaaaaacat
GGTCTTTACAAATCTAGTATACGTATATAATTATATTAGTATTCTATTAG
GGCTTATTGatgatttgaaataaaaaagaactgTACTGTAAGTGTATAAC
ATTTTTACCATAAAGATTTATAAGAGGGCAGTTTTTCAACTAAGGATTGT
TTGAATAAGACATGAAACTCTCAGTATTATACAATAATTTTCACTATTTC
AACTATCATAAGAATGACTTTGTCATATATTTTCTACATTTTAGTATATT
GGAGCTGTCAAGATTATTGAGTCCATGAGAAACGTACCATTTGAGCATAG
AGGTGCTGTTGTAAGGTCTGTTGACagtattctgtttttttttctctaag
gcgagaccaatttgattagttgttttatcagggggggggtacagaggcag
ggtactaaTCCATAGGGtattaacttgattttttactaaaattttgttta
ctaccacccacccatatttagtaccgagtactacttcatttttgctgtaa
aaaatagggacacccacccctaaaatcttaaattttacagattagaccaa
TAAAGGGGTACTATTGTTAGTTTTTCAGACTGAAAATTGACAGATAATTC
AAGCAAACTATCAATGATGGAGTCAgaagcttttgtcctttgattttcat
cacacacttcttttcaaaagagtaaaaaaaatttgtagattaaaaaaatt
taaaatcaaaaaaattaatatttgaaaaaagtcaaaatattacaacaaac
tactttttttttgaaaaacagcaaaattctgtgaaaaaataCCCAAATAG
TATCCCCACCCCCAGTAGTACtgtgtactaacttttttgaaatgcaaaaa
tagacaccaccacctggcTATGGGTCAGTACCCTGCGTCTGTACTCCCCT
GGTTTTAtgagctttttgtgtctttttattttctatttcacaTTTTTGTC
ATGATGGTAGCAGTTTTTACTGTAACAAATGCAGTTTTTAGGAGATAGTA
TAAATGAAAtgctacttttatttttattcttttgccAACCGACCAGCcct
tgggtagcttggcccgtaaaacaacaaattgaatTGGCTTCGCCtaagaa
catccacaatttttgaagccttcagatgttcttaaaaacGTTTTGAGTTA
TTTAAAAGCTTAAGTTtttgatttcaccattttatgaggatttttgttac
ttttccagaagaaatcagaaaatataagAATGTTACTGTCATTTTGAATT
CACAGGGAAGCAATATCAAGGTGTTGTCTACAAAGCAAACTCTTCAATTT
CAAGCCTAGCAAGGTAAGTGAAAATCTTGCGAGGAACTTAATGAGGCCCC
CCAACAGTTTGCATGATgacgtgattgggacttttttgtaGCGTGATAAC
atgatttggaatttttcatTTGTTATTGCGTGATTAGGGGTCAAAACATG
ATTTTTGTTTCTTGATAAACATGATTCGCACTTTTCCAAAGGGGTGTGTG
ATTATCCAATTTCTTTGCTGATTTGTGTGATCGTGATTAAATATAGTCCA
AACTCTATGACAGCAATTTTGTGTGTCTTTGGATGTCCTCCCAATTAACT
ATTAAAATGCCTACCTTTATGGATTTCTTTTTAAGAGAAACCATGTTTGA
AATCTTAAATTATAGACCTGGTTtccattaaaataaaatattcacAAGTA
AGCAATATCTTTTAATCTAAAAAGGCTAAAAATCAAGAGATTGggctttt
tttaatgtttgtaTTCTTAGAAAATAAAAGTGCCTATTAGGGTGTCTCAG
ATATTAAAAATGACCCTTAATCACTGTTCATGCAGAATTTTTCAACAGAA
AAGCACCAAAGAAGACtttcaaatctttaaagaattttttcagttaCAAT
CGAATATTGTTTAAAAACATCATcaatgatttttaaaagataTAATTTCT
AGCAATAATTTTATATGCTGTTATGATTTTCAGATATCTGTGACGCATGG
AGTAGTAGGAGGTATGTAAAGAAACCTTAAAATATGTttaaactttctat
tttttattctGAAATTCGTGTTATTTATAATgacctaaaaaaatattttc
cgctttttataaaaatttgaaaagctgTTTCTCTATAAATCATCACGTCT
TCAATATCATGATGCATACCCTTTTTCCATTGAAATCATACAGTATTTTG
ACAAGTTAAATTAGCATGGTATGAGTTCACTTTTGTTTCTCATTTATTTT
AAGATGTTGATTTACAGAACTGTGGCGACAAATCTATGATCACATTCTCC
AAGACCACAGTCAAAGCTTTTGTTTTGGAATCCGGTGTTCAACTATTTCA
ACATCCCATGGAGAGCATCTCATTTGCAAGCTTAGGAGAGGGAGTAAGTT
GAGACACAAATTCTTTTCTATAGATTGTTTCATAGCAAAGACAGGGAAAA
CTAACctattttaagaaagaaaagtaaaaaacggTTTGATAACAGTTGAA
AAACTTTCCCAAATCCCAATTTCaagccgggtgacggctaggcTATTTCT
ATTTCTCCACACACtcttttcttggattttttaaGGCTGCCCGCTAAAAG
GCAAGTTAATCTGGtggaaaattgaatatttttgaaaaggtgAACCCAAT
ATTTTAAATTactgattttattttattttcagcaaTATGAAAATCTGGTG
GCATATGTAGCAAAAGATAGTCGGCTTGAAAGAGGTATGTTATCGTTATT
TAGAGAAAACTTTCAACTACTGCTTAAAATATTGATGAATTTATAAATGA
AATTTCCTATTATTAAATCTCCTGtattatttcaaaagaaaattaatgta
caaaagaattatttaaccgtattacttcgaataaacgctcccttttttta
aatgcccctcgaataaacgcccctactttaaattttcaataaaccCCCAC
CCCTCAAATAACCGCCTCATAGGAGGgacgtttatttgaaacaaagCTTT
AGATTAGATATACAACAATAATTGTATTCTTTTTGTATTCGAACTAGTTT
TGACAAACTATGTAAAGTACAGGTCAAAAAAACAATATTCAATTTATTTT
CTGTAGAGTAAAAAACCTATATATATGATAGGAAAGGTTGTGAGATTTGG
TTAGTTTTNAACAAAACACCTAGactaaaaaatttgatttgtgTAAAAAG
GAAAGGTTGTGAGATTTGGTTAGTTTTCACTTTCTTGTATATAATTTATT
ATAGGTTGTTTCATTTTCGAGTGTGCACCTGGGCTAGCCAACGACCTGAT
CTTGACCATCGGGCAAGCATTTGAACTGAAATATAAAGATTTCCTGAATA
AAAATCCTGTCATCCAACCCGTTGTCGCAAGGTAAAATAGACATACAAAA
CATGATATTAGCGGACTATTTACTTCTTTTACTCTTTACTTACGAaattt
tgtaacttttgatgTATAGTTGAGGCTCTCTAATTCGAGGTTCTCTAATT
CAAGTTTCAAGGTGGATTGAATTTTTTCATGGAGAAGGTAGAGTATCGAG
TAGTAGAGTGCCGTTCATGAGAGTTTCTCGTTGACTGTGACTTTCAATAT
TGTCGAATATTTTAGTGTATCGAATAATacaacgtcgaattagagagtgt
caactatCTAATTTGTCGAGAAAGCTTGTTGAGTCAAagatatataaaaa
ataaacccTTAGCGTATGGGCCAGATTTTGGAAAGAGGACTCGGTGCTAC
CCTCAGATTTTGCTTATATTGATTAGAGAATATCATGTaccccagccggc
acacaacgtcaaaacaacgtcaaaTCAACGtccataacgtccatataacg
ttgtatgaacgttaaaataacgttgtgtgtcagctgggcgCAATTAATTT
CTTACAGGTAACATTTCAAAAACTCAAATGTCACCTGTCACCTTTTTTCT
GAACCAGTCTTTTCTCTAAGTTAGAAATATTAATAGACCTTAAGGCCGgt
gtccactttcgcgcgaagcACGTGAAACTTTTCACGTTATTTGTAACgtc
attggttgattgaaaaaagaagcaattccattggtcaaaattgacgtaac
agttgaaaaaagttgaacttccttcaactttttttttgttcgcgcgaaac
ttttttatgacgtgatcttttcttcaggcaaaaacggTTAAGAAAAATCT
TTCGCGTGCTTCGCACGAAAGTGGACATCGGCCTTTAGATCGGCCAATGA
ACATTTTCACCTTGAAAAGGAATATGATTTGTTTTGAAGATCAACTATCC
TTTCATTCTTTTTAGATTTGGTGACCCGTCGAGTGCTTTAAATGCTCAAG
TACAGAACAGATATGAAGATACCACACCTAAAGAACATACCTATTCAAAT
CATCATGATTTTGAGGGTGCGACGGCCCCAGAGATGGACTACGACCATCT
TGCAAACAATAATAAACGACTCGAAACTCAGGTTAGCATTTTTCTCCCTt
tcgtttgcttttttttttttttaatgattacAAAATTAGCTTCTTTTAAC
GGCTTTTGGTAAGGATTTAAGAGGCGCAAATACGTTAAATATTGTAAATA
TTGTGGTTCAACCGCTTACAAATAATTTATGaccttttttatcaaatttc
ggAATCTTTGGTAAAGACGTTGtctaaaagaacaatttttttgaatcgTA
CACAGTATGAAAAGAAGCTTTTCCGTCTCTAGATTTTAGAAAGATTGAGT
ATTATAACGAGCCTTGATATGCAACACACAAACAATAACATACACATTAT
GGAGATGTATATTCTCGGTAGCTCTTTTCGAAGTGCCtgccattttaaag
atattcttttttcatAATATAGCAAGTGAGCCCCCCCACCCCCCTCgttt
gctgacaaagcagaaatGGTTTTTCAAATTTGTGCTCGTTGTTGTTTTAG
AAATTCTGCCTTAGAAAAAGGTCGGAGATATGAATTATATCTTTTAATAA
AAGAGTGAGCACTTTGTTTGCCTGTACTGTGTCTTAAAGACTGGAGATTA
TTTTAGGCCTTCCAGAAAAACCATTTCATGACATTAATCGATTGAAGATC
ATTTAATTTGCATCATTGTTGACATAAGATTAGCTGATtgtaaacattac
gtaatcatttttgtttattctATCAACTGGCTTGATGGAACTCGTTTTGG
CATTCTTGACAAATTGtttaacattttttaacttgtttcaccaaaaaaaa
gttttcaactaTACATTTAAAGCATTTTTCTTGTCTCTGACCTGTTTATG
AGGATGTTGTGTTAGATCTGTAGCTTCAAATCGCCATcattatttgattg
atttttacgGCTATCTTCCGCCTGAGTTAAAGTattggacggtgaaaaag
aatgcggctattatattttgatttttcccgacatgtttcggactcggtcc
gttctccCTGAGTTAAAGAAATTTTCGGGTTTAAAAACTATGACCATAAT
GAGAAGGttttaaggttttgaaaatACAGTAACACCTTTGTTTTAAACTT
CCTCGTGTCGGCTTTTTCCAGTTTAGAGTAACGGCTGCATAAAGAGAATT
CGTGTGCGTAAGGTTGTGGGTTGATAATGCCACTATTTCATCGGCTGAGA
CGGGTTTCACTTTAGAGGAATAAATGCCAAGACGGGGTTTTTTGTTGTTG
TACAGTTCATCACTCACACCGTGTTATTCTTCCACGTCCATAAACCTTGA
GCGCCATATTCTCCCTGCATAGAGCTTTACGGAAGATAACATCTTCAAAG
GGTTTGTGAATCGTAGCTTTGCCTTCTGTGTTTAACTAGTATCTTGCAGC
TAAAGAGATTGATCAAGGCTTAGCAGAAAGAACTAAAGATAAAGTCGTTC
GCTCCCAAACCAAGATCAAGCCTATGAAGCTAACGGAAAAAAGACATCTT
CTGGTCGTCTTTGACTGTATTCCCAGATTTTACTACAGTCTTTATAAATC
AAACACGCACGAGAAAcacgaatttgttcgagttaaggaaatttcgagtt
atgaagattggtttataaggcattgttaactgaaggaactagaaaacttg
ttcgagtcaaggagacattcgagttatagaggttcgagttaaagagactc
cactgtagttTACTTAAAATATAATTGGGGGagatgtttttaaatttatt
tttcttcttatgaaatcttaatttctttcttcttcattttcaggaAGAAC
AATATAACACATTAAGTATGAACNTATGAAATCTTACATTTTTCTTCGTC
TTTTCTCCAGGAAGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029782	XLOC_029782	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_116	supercontig	scaffold_116:609553..616369 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.40753	7.40417	8.36464	9.55616	7.23296	6.4218	5.658	5.18284	5.98587	9.11696	6.15249	5.59363	5.46847	5.39909	3.56988	4.90107	6.49787	5.22278	3.91701	7.28793	7.78949	7.77803	5.87885	7.98914	5.19035	5.21674	8.30408	6.94571	8.78696	6.63777

Blast

[Close]

BLAST of TCONS_00046664 vs. Swiss-Prot (Human)
Match: SHC1 (SHC-transforming protein 1 OS=Homo sapiens GN=SHC1 PE=1 SV=4)

HSP 1 Score: 137.887 bits (346), Expect = 1.965e-36
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 3

Query:  174 GNDWKATGSFVRKPVKGWLHSDRLLESSGVTYEAKYIGAVKIIESMRNVPFEHRGAVVREAISRCC-----LQSKLFNFKPSKISVTHGVVGDVDLQNCGDKSMITFSKTTVKAFVLESGVQLFQHPMESISFASLGEGQYENLVAYVAKDSRLERGCFIFECAPGLANDLILTIGQAFELKYKDFLNKNPVI 737
            G +W   GSFV KP +GWLH +  +   GV+Y  +Y+G V++++SMR + F  R  V REAIS  C      +      KP    ++  ++G  +L+  G    +T S +++     +    +  H M+SISFAS G+      VAYVAKD   +R C I EC  GLA D+I TIGQAFEL++K +L   P +
Sbjct:  131 GEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSS-ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKL 322

The following BLAST results are available for this feature:

BLAST of TCONS_00046664 vs. Swiss-Prot (Human)

BLAST of TCONS_00046664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SHC1	1.965e-36	38.34	SHC-transforming protein 1 OS=Homo sapiens GN=SHC1...	[more]

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TCONS_00046664 (transcript) - C. hemisphaerica