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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046669 ID=TCONS_00046669|Name=TCONS_00046669|organism=Clytia hemisphaerica|type=transcript|length=3803bpRun BLAST on NCBI protein sequence of TCONS_00046669-protein >TCONS_00046669-protein ID=TCONS_00046669-protein|Name=TCONS_00046669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp MKFLASLLALCSCTKIQANEDDQNGLDNDQPDGPQSQPIIRDNVTSAKSARun BLAST on NCBI transcript from alignment at scaffold_116:647135..694991+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046669 ID=TCONS_00046669|Name=TCONS_00046669|organism=Clytia hemisphaerica|type=transcript|length=47857bp|location=Sequence derived from alignment at scaffold_116:647135..694991+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:647135..694991+ >TCONS_00046669 ID=TCONS_00046669|Name=TCONS_00046669|organism=Clytia hemisphaerica|type=CDS|length=33210bp|location=Sequence derived from alignment at scaffold_116:647135..694991+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046669 vs. Swiss-Prot (Human)
Match: DNAS1 (Deoxyribonuclease-1 OS=Homo sapiens GN=DNASE1 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.740e-52 Identity = 96/258 (37.21%), Postives = 147/258 (56.98%), Query Frame = 3
Query: 1473 LSIGSFNVQRFGEKKMNNEFVVKHLYKIMERYDLVLIQEVQDQDLENVPNFVENFRKATNKDYEYKISESLGRKTYKEQYLYIYRRDLMEVFYNDIYDDGDESKGEDTFAREPYIMHIKSHLLPANGIILVGAHIAPKKVAQELEEMVKVHAFIKEKFSEGIS-VVFMGDFNADGSYLSNRKKEKLTFFKDNDYKWILDEDTDTTLAKNDYTYDRIIIYGQALNEMIIADSAKAFYYDEAFSLTNEEAKDISDHYPVE 2243
L I +FN+Q FGE KM+N +V ++ +I+ RYD+ L+QEV+D L V ++N + Y Y +SE LGR +YKE+YL++YR D + + YDDG E G DTF REP I+ S +V H AP E++ + V+ ++EK+ G+ V+ MGDFNA SY+ + + + ++W++ + DTT YDRI++ G L ++ DSA F + A+ L+++ A+ ISDHYPVE
Sbjct: 23 LKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKW--GLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVE 278 HSP 2 Score: 145.976 bits (367), Expect = 7.894e-38 Identity = 85/260 (32.69%), Postives = 134/260 (51.54%), Query Frame = 3
Query: 576 SATIATFSINRFNQKKYENNEVKEYLLKILSRYDFIFIQEVQDESEEFIHLFIEELKGMTGKSYKYKLGKASGRKSKKNQLMFLYRDSLFTLIDHYQYQD-----NDDKFERQPFIAKFRSNKLEVEEFAVIGVCLHYDSVEAEINHLASVHEEMKNFWGDIPTLIMGNFMTGGSHISKTKLRETALQKDSNYVWFV-DNIDTTVLKNKYCYDRIIGYGNIMEN-IQLDSVKAFRFDDEFGLSMDEAKAITDHYPVEVVI 1334
S IA F+I F + K N + Y+++ILSRYD +QEV+D + ++ L +Y Y + + GR S K + +F+YR + +D Y Y D +D F R+P I +F S EV EFA++ + AEI+ L V+ +++ WG ++MG+F G S++ ++ L + W + D+ DTT YDRI+ G ++ + DS F F +GLS A+AI+DHYPVEV++
Sbjct: 22 SLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVML 281 The following BLAST results are available for this feature:
BLAST of TCONS_00046669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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