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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046829 ID=TCONS_00046829|Name=TCONS_00046829|organism=Clytia hemisphaerica|type=transcript|length=2320bp
gacccTCGAACACGCCCGGACACCGCCCGGAATATTCCGGGCGTAATCCG
GGTGTTCCGGGCGCTAAGAtctatttatcaaaaacactgTTGATGGAGAG
AGAGTGCTCCATCGTTATGAACATTTGATTGGCCGTGTTGTTAATGTTTC
TGTGTTTTAATTAGTATTCCCTGTAGATTCTTTCAGTTTTCATGTGTCTC
TTGAGTCCTCTTTTGTTTAGTGTCCCTTTTGTTTTAAGTGTCTTTTGTAT
CCCCAAATTGCGTTTTATACGTTTTATATATCATTTGTAATTCCTCTAGG
GAAATTAGGATATGTTTATTAACTGTAAATTTGGTAGATAGGAATTAGTT
CAACACTGAGAGACGTGAGTGAGTGTCTTGTGTGTGAGAGGTGCGTTTTA
CTAAAATTTAATTTACTGTCGTTTTATTTCGgttctttttggttttgtta
CATTTTAAGTTGGTTTAAGTTCAAGAATTGGTGTTtgcattttacatttt
ctgTTCTCCATTTTCTGTTTGGTTTCCTTAGGTTAGGTTCCTTTTTGTCC
ATTAAGGCTGAGATATTTCGACcagtcaaattattcaaaatatctTCGTT
CTCTCCACTCACAAGTAAATTAAATTAGTATCTGTATTTCTGTTTCATCT
GCATTTCTGTCTCCTATTCACATTTATGTTTCTTCCCTAAATGTCGAAAT
GTTTGGAGCGACATTTATAGTAAAAACACTGACGTGCACTGTGTATGTTG
ACAGCTTCGTATGATTGTATATTGGATGCTAGAAGTTGATCAGTTTGCTT
CGAGATCAAAAGAATCGGAACTGAAATAAAGATGGCCAATCACCCAATTC
ATGGATTTAATAATGAACGTTTCAAGTTGGTCGAATTATTGATCGAGTCG
ACAAGATTTTTAAAACGTGTGTACAGTGGTGTCAATCCTGATCCGGAACT
TGACCCAATTATTCATCAACATGAATCGAAACGACTTACAGGTTTGGCAA
ATGATTTTAAATTACTTTATGACAGAAATTACTCACTGATGCTCTCGGTG
TACGGAGAAAAGGAAACCCAAAAGGAATTTGCAGTTCGAGATATGTTCAT
TGGTGCGGCTCGAGATGTTATAGATTCAGCACCCCTTAGTTTCAAGAAGG
TGAAAGTAGTTCCAAAGTTGGATCGTGTTGAATGTAGCATGGCCGTAAGT
TATCCTTATCCGCAAATTTTGGTAGTTTCTCCAGTTGTTGATAGAGCTGT
TTGTCGCGTGGTTACTAAAAGTTGTAAGCCCAAAATTGAGTCGCACATGG
TCGAAAGTGTCCTTCCTACCTTACCCTAAAGTCAGTGTTGTTTCTGAAGT
AGTCAAAAATGTTCGTGTGACTATTGGAAAGccaaaacaagaaattttgT
CTCGCGTGGTCGAGAGTGTCGAGTCGTATCCCAATGTTGTCGTCGTTACT
GAAGTGTCCGAAAATGTTTGTCACGAGATCGTCCGAAAAGTTCAACCAGA
AATTTTGTCTCATCACATGGTTGTCAAAGAAGTTCAACCTCGTCGTGTTG
CACGTATTGCAGAGAAGCTGAATGTTTCAATGTTAAATGTGAGTagaaat
tttaaagataaaCGAACTTTCGATAATGAAACTCCTCTCATTTCCAAAAG
ATCAAAAGTGCATCCTATCGTCAGTTCCCCTAACCTTGCAGTTTGCCTAA
ATGCCCGAAACTACAAACCAAAAAGGAAATGCAAACTTCAGTTGAAACGT
TTTTTGGTAAATAACTTTTATTGCAAGCTGTTTTTGAGAAGTTTTTGGAC
GTTCTTCCTTTTGTCAGATTTTCAAAAGGTTGTTATTGGCTATCCCCGTT
GGACTTACGTTTCGTTATCTGGACTAATCAATGGGTTAATCCCGAATGTG
GTTTTATATTTGCTTACAGTTATGAGTACTGGGTACCAGTTTGGTCAAGA
TGCCAATATCTTGACGGTGGGGAGTGTTACTGCCGCTAGGCAGTAGTTTT
GGTTAGATTATTTTTACGTTTCCATTGTACTATAGCATTTGCATTTTGTA
TAGGTTTATTGGTTTGTTATTATATTTTGGATGTCTCTAGTGTATTGATT
GTCTTAGGAACTTTACGTCATTTGTGCATAATTAATGTTTTGTTAGTCCC
GTGAGAGTTCTGTGCCGTCTATTGTTCTTGTATTTAATAAATGTGTAAGA
AATAGGataattttcaatgtttgtaaATAGCTTGTCAAGTGTACTTACGT
GTATGCAGTGTATGTGGAAAGTGTTTTTACCGTTACTTCGAGAAAGAACG
CGTTTGAAAACCAATCCACA Run BLAST on NCBI protein sequence of TCONS_00046829-protein >TCONS_00046829-protein ID=TCONS_00046829-protein|Name=TCONS_00046829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MANHPIHGFNNERFKLVELLIESTRFLKRVYSGVNPDPELDPIIHQHESK
RLTGLANDFKLLYDRNYSLMLSVYGEKETQKEFAVRDMFIGAARDVIDSA
PLSFKKVKVVPKLDRVECSMAVSYPYPQILVVSPVVDRAVCRVVTKSCKP
KIESHMVESVLPTLP Run BLAST on NCBI transcript from alignment at scaffold_117:69619..71938 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046829 ID=TCONS_00046829|Name=TCONS_00046829|organism=Clytia hemisphaerica|type=transcript|length=2320bp|location=Sequence derived from alignment at scaffold_117:69619..71938 (Clytia hemisphaerica)
TGTGGATTGGTTTTCAAACGCGTTCTTTCTCGAAGTAACGGTAAAAACAC
TTTCCACATACACTGCATACACGTAAGTACACTTGACAAGCTATttacaa
acattgaaaattatCCTATTTCTTACACATTTATTAAATACAAGAACAAT
AGACGGCACAGAACTCTCACGGGACTAACAAAACATTAATTATGCACAAA
TGACGTAAAGTTCCTAAGACAATCAATACACTAGAGACATCCAAAATATA
ATAACAAACCAATAAACCTATACAAAATGCAAATGCTATAGTACAATGGA
AACGTAAAAATAATCTAACCAAAACTACTGCCTAGCGGCAGTAACACTCC
CCACCGTCAAGATATTGGCATCTTGACCAAACTGGTACCCAGTACTCATA
ACTGTAAGCAAATATAAAACCACATTCGGGATTAACCCATTGATTAGTCC
AGATAACGAAACGTAAGTCCAACGGGGATAGCCAATAACAACCTTTTGAA
AATCTGACAAAAGGAAGAACGTCCAAAAACTTCTCAAAAACAGCTTGCAA
TAAAAGTTATTTACCAAAAAACGTTTCAACTGAAGTTTGCATTTCCTTTT
TGGTTTGTAGTTTCGGGCATTTAGGCAAACTGCAAGGTTAGGGGAACTGA
CGATAGGATGCACTTTTGATCTTTTGGAAATGAGAGGAGTTTCATTATCG
AAAGTTCGtttatctttaaaatttctACTCACATTTAACATTGAAACATT
CAGCTTCTCTGCAATACGTGCAACACGACGAGGTTGAACTTCTTTGACAA
CCATGTGATGAGACAAAATTTCTGGTTGAACTTTTCGGACGATCTCGTGA
CAAACATTTTCGGACACTTCAGTAACGACGACAACATTGGGATACGACTC
GACACTCTCGACCACGCGAGAcaaaatttcttgttttggCTTTCCAATAG
TCACACGAACATTTTTGACTACTTCAGAAACAACACTGACTTTAGGGTAA
GGTAGGAAGGACACTTTCGACCATGTGCGACTCAATTTTGGGCTTACAAC
TTTTAGTAACCACGCGACAAACAGCTCTATCAACAACTGGAGAAACTACC
AAAATTTGCGGATAAGGATAACTTACGGCCATGCTACATTCAACACGATC
CAACTTTGGAACTACTTTCACCTTCTTGAAACTAAGGGGTGCTGAATCTA
TAACATCTCGAGCCGCACCAATGAACATATCTCGAACTGCAAATTCCTTT
TGGGTTTCCTTTTCTCCGTACACCGAGAGCATCAGTGAGTAATTTCTGTC
ATAAAGTAATTTAAAATCATTTGCCAAACCTGTAAGTCGTTTCGATTCAT
GTTGATGAATAATTGGGTCAAGTTCCGGATCAGGATTGACACCACTGTAC
ACACGTTTTAAAAATCTTGTCGACTCGATCAATAATTCGACCAACTTGAA
ACGTTCATTATTAAATCCATGAATTGGGTGATTGGCCATCTTTATTTCAG
TTCCGATTCTTTTGATCTCGAAGCAAACTGATCAACTTCTAGCATCCAAT
ATACAATCATACGAAGCTGTCAACATACACAGTGCACGTCAGTGTTTTTA
CTATAAATGTCGCTCCAAACATTTCGACATTTAGGGAAGAAACATAAATG
TGAATAGGAGACAGAAATGCAGATGAAACAGAAATACAGATACTAATTTA
ATTTACTTGTGAGTGGAGAGAACGAagatattttgaataatttgactgGT
CGAAATATCTCAGCCTTAATGGACAAAAAGGAACCTAACCTAAGGAAACC
AAACAGAAAATGGAGAAcagaaaatgtaaaatgcaAACACCAATTCTTGA
ACTTAAACCAACTTAAAATGtaacaaaaccaaaaagaacCGAAATAAAAC
GACAGTAAATTAAATTTTAGTAAAACGCACCTCTCACACACAAGACACTC
ACTCACGTCTCTCAGTGTTGAACTAATTCCTATCTACCAAATTTACAGTT
AATAAACATATCCTAATTTCCCTAGAGGAATTACAAATGATATATAAAAC
GTATAAAACGCAATTTGGGGATACAAAAGACACTTAAAACAAAAGGGACA
CTAAACAAAAGAGGACTCAAGAGACACATGAAAACTGAAAGAATCTACAG
GGAATACTAATTAAAACACAGAAACATTAACAACACGGCCAATCAAATGT
TCATAACGATGGAGCACTCTCTCTCCATCAAcagtgtttttgataaatag
aTCTTAGCGCCCGGAACACCCGGATTACGCCCGGAATATTCCGGGCGGTG
TCCGGGCGTGTTCGAgggtc Coding sequence (CDS) from alignment at scaffold_117:69619..71938 >TCONS_00046829 ID=TCONS_00046829|Name=TCONS_00046829|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_117:69619..71938 (Clytia hemisphaerica)
TTAGGGTAAGGTAGGAAGGACACTTTCGACCATGTGCGACTCAATTTTGG
GCTTACAACTTTTAGTAACCACGCGACAAACAGCTCTATCAACAACTGGA
GAAACTACCAAAATTTGCGGATAAGGATAACTTACGGCCATGCTACATTC
AACACGATCCAACTTTGGAACTACTTTCACCTTCTTGAAACTAAGGGGTG
CTGAATCTATAACATCTCGAGCCGCACCAATGAACATATCTCGAACTGCA
AATTCCTTTTGGGTTTCCTTTTCTCCGTACACCGAGAGCATCAGTGAGTA
ATTTCTGTCATAAAGTAATTTAAAATCATTTGCCAAACCTGTAAGTCGTT
TCGATTCATGTTGATGAATAATTGGGTCAAGTTCCGGATCAGGATTGACA
CCACTGTACACACGTTTTAAAAATCTTGTCGACTCGATCAATAATTCGAC
CAACTTGAAACGTTCATTATTAAATCCATGAATTGGGTGATTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046829-exon-scaffold_117-1491911889:69619..71938 | TCONS_00046829-exon-scaffold_117-1491911889:69619..71938 | Clytia hemisphaerica | exon |
| TCONS_00046829-exon-scaffold_117-1510915933:69619..71938 | TCONS_00046829-exon-scaffold_117-1510915933:69619..71938 | Clytia hemisphaerica | exon |
| TCONS_00046829-exon-scaffold_117-1575043694:69619..71938 | TCONS_00046829-exon-scaffold_117-1575043694:69619..71938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:69619..71938 . |
Blast
The following BLAST results are available for this feature:
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