TCONS_00046830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046830
Unique NameTCONS_00046830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046830 ID=TCONS_00046830|Name=TCONS_00046830|organism=Clytia hemisphaerica|type=transcript|length=743bp
TGTTTGGAGCGACATTTATAGTAAAAACACTGACGTGCACTGTGTATGTT
GACAGCTTCGTATGATTGTATATTGGATGCTAGAAGTTGATCAGTTTGCT
TCGAGATCAAAAGAATCGGAACTGAAATAAAGATGGCCAATCACCCAATT
CATGGATTTAATAATGAACGTTTCAAGTTGGTCGAATTATTGATCGAGTC
GACAAGATTTTTAAAACGTGTGTACAGTGGTGTCAATCCTGATCCGGAAC
TTGACCCAATTATTCATCAACATGAATCGAAACGACTTACAGGTTTGGCA
AATGATTTTAAATTACTTTATGACAGAAATTACTCACTGATGCTCTCGGT
GTACGGAGAAAAGGAAACCCAAAAGGAATTTGCAGTTCGAGATATGTTCA
TTGGTGCGGCTCGAGATGTTATAGATTCAGCACCCCTTAGTTTCAAGAAG
GTGAAAGTAGTTCCAAAGTTGGATCGTGTTGAATGTAGCATGGCCGTAAG
TTATCCTTATCCGCAAATTTTGGTAGTTTCTCCAGTTGTTGATAGAGCTG
TTTGTCGCGTGGTTACTAAAAGTTGTAAGCCCAAAATTGAGTCGCACATG
GTCGAAAGTGTCCTTCCTACCTTACCCTAAAGTCAGTGTTGTTTCTGAAG
TAGTCAAAAATGTTCGTGTGACTATTGGAAAGccaaaacaagaaattttg
TCTCGCGTGGTCGAGAGTGTCGAGTCGTATCCCAATGTTGTCG
Run BLAST on NCBI

transcript from alignment at scaffold_117:70497..71239

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046830 ID=TCONS_00046830|Name=TCONS_00046830|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at scaffold_117:70497..71239 (Clytia hemisphaerica)
CGACAACATTGGGATACGACTCGACACTCTCGACCACGCGAGAcaaaatt
tcttgttttggCTTTCCAATAGTCACACGAACATTTTTGACTACTTCAGA
AACAACACTGACTTTAGGGTAAGGTAGGAAGGACACTTTCGACCATGTGC
GACTCAATTTTGGGCTTACAACTTTTAGTAACCACGCGACAAACAGCTCT
ATCAACAACTGGAGAAACTACCAAAATTTGCGGATAAGGATAACTTACGG
CCATGCTACATTCAACACGATCCAACTTTGGAACTACTTTCACCTTCTTG
AAACTAAGGGGTGCTGAATCTATAACATCTCGAGCCGCACCAATGAACAT
ATCTCGAACTGCAAATTCCTTTTGGGTTTCCTTTTCTCCGTACACCGAGA
GCATCAGTGAGTAATTTCTGTCATAAAGTAATTTAAAATCATTTGCCAAA
CCTGTAAGTCGTTTCGATTCATGTTGATGAATAATTGGGTCAAGTTCCGG
ATCAGGATTGACACCACTGTACACACGTTTTAAAAATCTTGTCGACTCGA
TCAATAATTCGACCAACTTGAAACGTTCATTATTAAATCCATGAATTGGG
TGATTGGCCATCTTTATTTCAGTTCCGATTCTTTTGATCTCGAAGCAAAC
TGATCAACTTCTAGCATCCAATATACAATCATACGAAGCTGTCAACATAC
ACAGTGCACGTCAGTGTTTTTACTATAAATGTCGCTCCAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029875XLOC_029875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046830-exon-scaffold_117-1491911889:70497..71239TCONS_00046830-exon-scaffold_117-1491911889:70497..71239Clytia hemisphaericaexon
TCONS_00046830-exon-scaffold_117-1510915933:70497..71239TCONS_00046830-exon-scaffold_117-1510915933:70497..71239Clytia hemisphaericaexon
TCONS_00046830-exon-scaffold_117-1575043694:70497..71239TCONS_00046830-exon-scaffold_117-1575043694:70497..71239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:70497..71239 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.447337	0.360299	0.168351	0.859565	0.176892	0.421898	0	0.318352	0.045644	0.210231	0	0	0	0	0.0027435	0	0	0	0	0	1.05193	0.245322	0	0	0.0639543	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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