TCONS_00004613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004613
Unique NameTCONS_00004613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004613 ID=TCONS_00004613|Name=TCONS_00004613|organism=Clytia hemisphaerica|type=transcript|length=3380bp
CGAAAAGTCAAACGGTCACTTTAAAGCAATATCTGTTTTGTGTTCAATTT
TGATCGATACATATATACAATTTCAAGCAAATTTCTCAAGGTTGCACTTT
GAAGAATTCGATTTAGTtgcaaaatcaaatatttttatttgccGGTCAAT
agaaaaccttatttttatCATAACATAAATTGGCACACTTCAACTTAAGT
CAGAAAAGgaaattttCGTTCTGTCAGTATCCATTCTTGTTGAGTTTACG
AGCCAAACGATTTATCATGCAGAAAGATTCCGAAACAAAAATGTTACTGG
AAGCCAGGCAAAGTTTGGTTAACAAAGTACGACAGAAACAAAAGCCAAGC
ATGGGAATGCTATTTCTCAATCTGGATATTCGACGAAATAATCTGCTGGA
AGATTCTTTGAAAGAGatttcaAAGAAACGTGCAGACTTAAAGAAGAAAT
TACGAGTGATCTTCAAAGGGGAGCCTGGGATCGACTTGGGCGGAGTCAGC
AAAGAATGGTTCTTCTTGTTGATtcaaaaattcttcaaagaagaTTATGG
CATGTTTAAATACAGTGAGAAACGACATAATTGGTGGTTTACTGCTTCAA
GCAAAGATAGCTTCAAAGAATATAATTTATGTGGAGTGCTTCTTGGTTTA
GCCATATACAACGGAATCAATCTAGATATCCGGTTTCCGCCGATTGTTTA
CAAGAAATTATTGAGTCCCGCAATTGTTCCATATAACAACCCGCACGCCT
ACGTTGGAGTGGTACCAGCTGGGGTGGACGACCTGAAACAAGTTTATCCG
GAAGTAGCGCAAGGTTTGAGAGATTTGTTGGAATATGATGGAGATGTGGA
AGATGATCTTTGTCAAACTTTTATGATTTCATTCACTGAGAATGGGCAGA
CGATGAATCGACAGTTGAAAACCAATGGAGATACAATCCCTGTCACCAAT
CTCAATAGACAAGAATATGTGAACCTTTATTGCGATTATTTGGTCAACAA
ATGTATTTATCAACAATTCTACTCATTTTATCATGGATTTCATAGTGTGT
GTGCTTCTAATGCTCTGCTActGTTACGTCCAGAAGAAGTAGAAACGCTT
GTTATTGGTAACCCTAATTTCAACATCAAAGACTTGGAGAAAATCACTAA
GTACGATGGTTTCAAAAGAACAGATGCTACAATCAGATATTTCTGGGAGA
CAGTTCACGAATTTGATCAGAAGCTTCAACGTAAATTGTTGTTCTTTTCG
ACGGGAAGTGACCGGATACCTGTCGGTGGtttcaaagaaatgaaattcaa
aatcaCCAGAATCGCTGGTCAAAACGCTATCAATATGTTACCGATGGCTC
ATACATGCTTCAATCAATTGTGCCTACCATCTTATAAAAGTCGAAAAGAT
ATTCACGAGAAACTTCTAATCGCGATAAGCAATGCTGAAGGATTCGGATT
AGAGTAAAAAGGTGTCTTGGGTATTGATTTACGATACTGACGCAATTCGC
AATTGAGTGTACGTTCCAAAATAGAACCAAGCTCAGACTTTATAGTTGTG
GTCCTCTTCGAAAAGAAATAAAGCTATTCTATTGGTCAAAAATGTTTTGT
GTCATAAAATTatccaatggaattgcttcattttgacATGGACCTGTACC
AAACATAGAAAGAGAGTTGCTGAAATGAAAACGAACAGATTGCCGAGATA
TGCATattaaattttgaccaattGTACTTTGCCATCAATATTAGCAGTAG
ACTTACTTTTGAGAATtcttaattcatgatattcatgacgtaatatttta
tacggaagcacctaAAGTAGAGCGGCCGCATGCCACtagtattttttgtt
taaattcaaattaccaaaattagtggcaaacaccCGATCTTTTTTTGGTT
CTTCCATATAAAACATCACGTCATGATTATCATAAATTTCAGTCATGCGA
AAATACAAAAACGGGTTGTCACGAAATGCTATTTATTTTGAGTGCAATTA
TTTTATGGTGGAGTTATGAAGGGAAGAGCAGAAAACGCTTTAGAATCACA
AATGTCAAACTGTTTGAGTATTTTGTTCTTTTACTAGATTCCTCATAGCG
TTCGTTTTCCCCGAAATTCCTTCCTATTTTCCACTCCTACTTATCTTACT
CAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTTCTCTGAGCAT
TTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgttaaaaagaaagt
tgattgtcgaagaaaaatagatataaaaaaaaatatNCTACTTATCTTAC
TCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTTCACTGAGCA
TTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgttaaaaagaaag
ttgattgtggaagaaaaatagatatagaaaaaaaaaattttaatcacATA
TCGACGCGATGATAATTTAAAGATACTTCAAAGTTAATTAGATTCCCAAT
TGGCGACTAATTGTTAACCTGTACTCGATAGAGTCTTTTATGTATGAATT
TCTAGCCCTGTCGGACGCCCAACGACCATGCTTTGAAATCAGTCTTTCGT
TGACGTTGTTTTGAGCGGCAGCAGATGCACCACCTGATCTAAGACTATGT
AAACCAAAATTGCCTTTAATTTCAGCCTCCTCTATTTTCtctttaaatat
ttcccttGCTCTCGTGTAAGAAATTCCTTCGGATAAATGGATCTTGTgac
cttttttgattttaatcaaTCTTGGAACTAAAAAACATTCAGGGTTGGAT
GTTAAGGATACGTTTGAAAGCGATAAAAATCTTTCTGCTAAGTTCACggg
gcaaaatttggtgttctCATTTCTTGAAACGTAAATTGTATTACCATCAC
GATGCTGATCACTTTTGGAGATTTCTAGAAAAATTTCGAGGTGGGCTGAT
TTTATTGTTACGTCCTTCAACTGTACGGTTAATAGTTCATCTATTCTGCA
GAAGCCAAAAAAGCCCAGGGAGCAAATCAATAGAAAACGTAAGCTCGTTA
ATGATTCTGAATCGAAAGTCTTAATTAAGTGTTTGAGGATTTCTGGCGTT
ATAGGTTCTTTAGGATTCTTCGGCTTCTTTTCACAAAGTCGTAACGTACC
TTCGTATGTCATACTCACGAATGGGTGGTCGGTAGGAGAGTATAGTCCGT
TGACGTGAAGACCCCATCTGATGCCGTAGAAGGCTGTTGTTAATGTACCA
CTCTTCTTCGAAGTTTTCAATACGAACTTCAGGTAGATTGCTACGTAAAA
GGGGTTTGCTGGAAATGGCATGATTTCTTCTTTATCTTTACACCAATCCA
ACCAGTTTGACCATGCTCGTTGGTATTTCN
Run BLAST on NCBI

transcript from alignment at sc0000047:46090..55679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004613 ID=TCONS_00004613|Name=TCONS_00004613|organism=Clytia hemisphaerica|type=transcript|length=9590bp|location=Sequence derived from alignment at sc0000047:46090..55679+ (Clytia hemisphaerica)
CGAAAAGTCAAACGGTCACTTTAAAGCAATATCTGTTTTGTGTTCAATTT
TGATCGATACATATATACAATTTCAAGCAAATTTCTCAAGGTTGCACTTT
GAAGAATTCGATTTAGTtgcaaaatcaaatatttttatttgccGGTCAAT
agaaaaccttatttttatCATAACATAAATTGGCACACTTCAACTTAAGT
CAGAAAAGGTATTTTTAAGTTAAGATACTAATTTCACTTTCATATTTATG
TAAATGGGGCCAATCCGTTTAAATTCATAAGTGAAAAAGATATGAAAGGA
ATTTTATAGCGGTAAATAATCAGGAGCGGTAAagagttttcttttcaaac
tcGTTTTCTGTGACATTTCTCGCTTTTTAACGATTCTAGAACTTACTTTT
TcttcttaatattttatttttccaggaaattttCGTTCTGTCAGTATCCA
TTCTTGTTGAGTTTACGAGCCAAACGATTTATCATGCAGAAAGATTCCGA
AACAAAAATGTTACTGGAAGCCAGGGTAAGGAAAATGTTGGTCTTTTAAC
ACCCCTTTTCGCAGACAGAACTGGTGGgagcacccccccccccccccccc
ccccccaaaaattttttcaaaattttaattttttttaaattttttttggg
gggagggggggggggggccccccccccccctcccctgCCACCAAAATATT
GTTCAAAGTGGATAATTATATTCCGATGTTTCTCCTCGATCAAAATAATT
GAATAAACAAATCCTCGCtctaaaattttgtgtttttttccatccccact
gaattttccgaattaaaaacaatagaattcaaatccccagccataaaaaa
cattgatttgTCAATAGTATTACCTTTGACCATTTAACGTTTTGATTGAG
TTTCTGGTGAATACAAAATAAATATGAATTCTTTTGTGCGTTCTCTTTGA
TTGCAAGTTAATGTTCTCGTGATGTTCTGATGTTTTTAGTAATCCTTCTA
TCTCAGTCGGATACAGAGACCTCTATACTTCATCAAAAGATGAGCAGCcc
tctctttcatttttcaagattattttattttatctcaCTTTACTTATTTT
CACAGCAAAGTTTGGTTAACAAAGTACGACAGAAACAAAAGCCAAGCATG
GGAATGCTATTTCTCAATCTGGATATTCGACGAAATAATCTGCTGGAAGA
TTCTTTGAAAGAGGTATAATAATGACgaataatttttgatttcttgaGCC
TCTTGTATTTGAACATCTAAAATTCTAGAAGAATTGCTAAGTTAGCAGAT
CCGaaacaactttttgtttttaaaagattttctcgCGATGTTTCTCATAG
CAAGATGCTCTTTGAGCTATCGATATATCGGGCTATATTGATAGGAAAAA
caatttccccaattttttcaCCAACATATTNGCTATCGATATATCGGGCT
ATATTTCGGGACAATTTCCCCATTTCTTTCACCAACATATCGCACCTTCT
CCCCCATTGactcttacagtgcactttcagAAGGCTGGGAACCATCTAAT
AAGGACCGTATCTCAGATAGGTCACATTGAGTATCCCCTGGTGGGAAttt
actgaaaaagaaaagtatattgTAATCAAgtatttttctttagatttcaA
AGAAACGTGCAGACTTAAAGAAGAAATTACGAGTGATCTTCAAAGGGGAG
CCTGGGATCGACTTGGGCGGAGTCAGCAAAGAATGGTTCTTCTTGTTGAT
tcaaaaattcttcaaagaagaTTATGGTAGGTTTTTGAGCTACAAGGTCC
GTAAGAAATGTATCAAACAACCTATTTTATGGCTTTTTCAGCAACCGTAT
TCCCTGAAGTTTTTAACCTACATGCTAGtccaaaacattttgaaaacccT
ATAAATGAGTACAAGGCAGGGCCCACcaccacttttttgcaaagtaaaaa
tttttggttgcgcctccttagactctatattcattgcccccccccccccc
ccccttttttttaaaaaaaaaatttttttcttttcttttctatctctttt
ttttttttcccccccccccccccccactttcaatttcatggcgTGGGCCC
TGCAAGGtgcttttcaaaatttgaagtattAAAACTGCTCTGAAGTTGAT
TTTGATAAACTCTTTACAACAGTTGACCTATTCCAATGAAAACATGAAAG
AATGAAACATATTATTCTTCGTTTCAGGCATGTTTAAATACAGTGAGAAA
CGACATAATTGGTGGTTTACTGCTTCAAGCAAAGATAGCTTCAAAGAATA
TAATTTATGTGGAGTGGTATCCTTTTCAATCGAATTGTGTTTTTAAGTAT
GATTTTTGACGAACTTAGCTTTTCAATGAACTATGCTATGTAATACTTTC
TATTTCCTCACCAAAAGAGGTTTTGGTCAATGTATGAATAACTTTTTCTG
GTGTGGTAATGCGTAAATGGAAAAATTGCGTCAACATGACAAATTTCCCG
ATTTGGATGAGTAAATTGTcattctcgtgtctccaccccatttttcttta
taccaataaaagtgaaatccacaaaattttgaataacattTGTGTGTCTG
TCGCTTTTGTCCCCGGGACAATGGagttcgaatcaattttgctccattat
cccagggacaaaatcagcgtgtcttttgggtactTTTTGGGTACAagaaa
agaaaccatgggacacgaactttttttcttgtgttggtgggatggagcat
gttgcattgcaccaacgcgaaaaaaaattctcgtgtccccaagccttaaa
cgattcaattttttttgcaaaactaTTCTTTCCTTAACTCTGAGCCATCC
GTAATACAGCTTCTTGGTTTAGCCATATACAACGGAATCAATCTAGATAT
CCGGTTTCCGCCGATTGTTTACAAGAAATTATTGAGTCCCGCAATTGTTC
CATATAACAACCCGCACGCCTACGTTGGAGTGGTACCAGCTGGGGTGGAC
GACCTGAAACAAGTTTATCCGGTAAGTTAACATAAATCAAAGTTAAAAGC
TTTTCCGTTTCtgcgaaatatataaaaaagctttttcgTATCAAAATTCT
GCTGATCCAGCAAAATTTCACAAGTATTTAGTTTGTTGTGTTAAATCCAT
CCTCCGTCGCAGACGTTTCCGTTGCTaagttattttctcttttacgcAAA
ATGTGTGAACCAGGGTGTTTTATATATACAGTCTAAGTACGACAGATCTC
ATGGAACTACAAGGTTTCATTGATTTACACTAATTGATCTGAATTCTGAT
TTTAATGAGTCGATTCCGAACCTTTGAATTTATGCAATGAAGTATCTATA
ATTTAAGCAATTTGGTAACTGGTAACGCGAGTTTTTCGTGTTATGGAGCC
TTGTTTACAGAGCCTATAGAGAATCAGAAAACTTAAGAGGCTCAACTAAA
CAGGGTTTTTTGGCATTATTTTTCTACTGTAGGAAGTAGCGCAAGGTTTG
AGAGATTTGTTGGAATATGATGGAGATGTGGAAGATGATCTTTGTCAAAC
TTTTATGGTGAGTTTGGAAGTTATTCATTCATTTTTCTCGTTACCTTTCA
ATTAAGAATTCGAGAGCGTGCACTAAGTGTTTTGGAACGAAgttgaagaa
atgaaaaagaagagaaCTTTTATCGTTGACTGCTTGATACTTCATTTTTA
GTGCTGAAGTTCCTTGAATCCAGTTATGTAATTACTTTTCGCATAGAATT
ATTGTATCGAAAGCTAAGACTTTAGAGAGTTTCCCGTTAAAGTGAAATAA
AATGGGAGAAAACAGAGTTTTCCAATTCAAATGCACGAGGTATCTTCGAG
CTCTTCTAGGGGCTGTAATTTTCGATGCAAGAGAATTTCGAGGCATATAG
CTGAAATAAAGGCTTCGAAGTACCTTTGTAGtaaaaacgaatttttcttC
TAATTCTTATACTAATTAGAAACTCTTCTTCTCAGTTTCAaaagaatatt
aaaaaaatattatcataTTTCTTGAATCCACTCGACTGTTCCCATAGATT
TCATTCACTGAGAATGGGCAGACGATGAATCGACAGTTGAAAACCAATGG
AGATACAATCCCTGTCACCAATCTCAATAGACAAGGTGCTTTTTTCTTAC
TCCccttaaaggccggtctccactttcgtgcgaaatgggcgacagttttt
ttctcaaccttttttgcctaaagaaaAGATTATGTCATAAAAGAGTTTCG
GGCGAACAAAAAacaagttgaaggaagttcaacttttttcaaccgttacg
tcaattttgaccaatggaattgattaatttttcaaccgactaataacctt
acaaaaacgttaacaagttttcgctcatttcgTGCGAAAGTAGAGACTGG
TCTTTAGCTTAATGGAGAAAATTAGTCAAGAGAAAAGTGGCGAAATTTCC
TGGCGAAAGCTCTTTCTCTGTTGTGACAAAAATTTACACAAACGTGACAA
ATTCAGACATTTTAACCTAAACTTTGTTTTACTATCTCGCGAATACAGTT
ATTTGTACAAAGATGGTACATGCTAAACTTTGATGCTTTATGACGGATGG
TCATTTTGACACTAAATTTTCCCGCCGCACTGCCAACTATTCGCACTCTA
GCTCACGAAGTTGTATCGTTCCAGTTTAGGATTGATTCTTACAATTTATT
TTCCAGAATATGTGAACCTTTATTGCGATTATTTGGTCAACAAATGTATT
TATCAACAATTCTACTCATTTTATCATGGATTTCATAGTGTGTGTGCTTC
TAATGCTCTGCTAGTAAGTCGAACATAAATATCTGAATTTAAGTGGTCTA
TTAGCCGTTTATGCAAGTCGAAATTAAATAGAATCTATAAGGTTTTAGTG
CAAGTCGAAAATGAATCGTCATTGCTGCAAAACAGGAGTCCCGTCCCTTC
CCATGTTTTGTTCAGCTTATAGATATCCGGCTGACCCGTGAAATAATCGA
AAGTTTAATAGCATCAGATTACAGACTGGGATATCCACGTTAGATGTTGC
ATCTATTGATCTTTAAAACATCCAGAACCTTCTCACTTTTATGCAAAGTA
GACTTTACCTTCCTGTCATTACCAATTCCGATAGCCCTGCTGGTTAAACT
CTGCTTaagaaaaataacgaagattTGTCAACCACTATTAGAGACTTTTC
GTTCccttatttcatttttcagctGTTACGTCCAGAAGAAGTAGAAACGC
TTGTTATTGGTAACCCTAATTTCAACATCAAAGACTTGGAGAAAATCACT
AAGTACGATGGTTTCAAAAGAACAGATGCTACAATCAGGTAATCACATAG
CCCATGCCCAGaccttttgtttttttatgatattGATAATAACACAGACA
GATACAAAGTAAAAGTTCACAGTACAAGTATATAATAATCCGTAGTTAAG
GAATGTCCATAACCTTATTAGGCGTGACGCGCACCGGTTCCCATCGTTTT
TTGAAAGTCGTGTATAGCCGTCTGTTTGACGTGTTCTTTCCACGGATTTT
TTAACTTAAATATCCATGTTTTGCCGATATCTCGAGTTagctttattcaa
aatttttggcaCAGCACTTTGCGGAACCCTCGAGGGAGCCACCCTCGACT
GCGGTTGTAAAATTTCTTACTTACCAACAACTAATAAACATTTTCTCAAC
ATTACAGATATTTCTGGGAGACAGTTCACGAATTTGACCAGAAGCTTCAA
CGTANACATTACAGATATTTCTGGGAGACAGTTCACGAATTTGATCAGAA
GCTTCAACGTAAATTGTTGTTCTTTTCGACGGGAAGTGACCGGATACCTG
TCGGTGGtttcaaagaaatgaaattcaaaatcaCCAGAATCGCTGGTCAA
AACGCTATCAATATGTAAGGAGAActtatgatattcatgacgtaatgttt
cctAGGAGAATTCAAAATTGTTCCCTGCGTAATGTCGGCTTTTCTTACTG
ATAACGCCGCCAGGTAAtggaccttatcggagttttttatttttctaaaa
cagcaatgagtccctcgaggaattcctaagagatttctattgtaataccc
ccgaaacaatccttcaatgcatcgcttttttagaaaattcgaaaactccg
ataagatctattcgCTGGAgtccatcagtaacgtaaataaaaccAAGGAT
atacggggacgaggttgaggAGAATTTAGATGATAAATCTATATTCTTTC
TCCTTGATATTCAATAATCACACACATTTTACTTCATAAAATActaacta
gcaagtagctgtcactaagaatgccccgcagagcttcTTTTCGAAATATC
CCTAATGAGCAAAATaacgcatgtgtagattttaaattcgttttatcgat
aaaattttagtcggaggaagaaagcttggtttcaactttacttttgagat
gacatgcgatagacggtcgctcacatctcaaaaagagaagttatcgctca
catgttatcacagtgGAAATACCAAagattctgaaattgatttgattctt
aaaaagtagacacttataataaaaGTAAATGTGCTCatatttttcgccat
cctttctaataactaattaccgaaagatatattgccttcaatcaagagtt
attgatttgattcttataaagtacatgcttgtaataaaaataaatatgct
catattttttgccattctttgtttactttctaataactaattaccgaaag
gcatattgccttcaatcaagtgttattgatttgattcttataaagtagat
gcttataataaaaatcaatatgctcatctttttcgccatcctttgtttac
tttgtaagaactaattaccgaaaggcatattgtcTACAATCAagatttat
tgatttgattcttataaagtagatgcttataataaaaataaatatgctca
tctttttcgccatcctttgtttactttgtaagaactaattaccgaaaggc
acaatcaagagttatcgatttgattcttataaagtagatgcttataataa
aaataaatatgctcatctttttcgccatcctttgtttactttgtaagaac
taattaccgaaaggcacaatcaagagttatcgatttgattcttataaagt
agatgcttataataaaaataaatatgctcatgtTGTTGTTCACGTACCTT
GTTTACTTTCttataactaattaccgaaagatatattgccttcaatcaag
agttattgatttgattcttataaagtaccaAGTAGCAACAAAAGAGATAT
AATATTAAGGTGcgcgcgaacattttttaaccgcggcagcccgctcagaa
tcggaagaaacaacatgaatctgaacatgaatatttttctggcgagcaac
tccgctacgtgaagcaacaaaagcccctgcggggcaaaaaTAATAAACTT
GAGAAAAGTTTATAAATGTTTAACCTGtacatttaaaatcaaaaagtgaa
agCGAAACAAGGGCATCCACTGAAGtatattattttcttatttcagGTTA
CCGATGGCTCATACATGCTTCAATCAATTGTGCCTACCATCTTATAAAAG
TCGAAAAGATATTCACGAGAAACTTCTAATCGCGATAAGCAATGCTGAAG
GATTCGGATTAGAGTAAAAAGGTGTCTTGGGTATTGATTTACGATACTGA
CGCAATTCGCAATTGAGTGTACGTTCCAAAATAGAACCAAGCTCAGACTT
TATAGTTGTGGTCCTCTTCGAAAAGAAATAAAGCTATTCTATTGGTCAAA
AATGTTTTGTGTCATAAAATTatccaatggaattgcttcattttgacATG
GACCTGTACCAAACATAGAAAGAGAGTTGCTGAAATGAAAACGAACAGAT
TGCCGAGATATGCATattaaattttgaccaattGTACTTTGCCATCAATA
TTAGCAGTAGACTTACTTTTGAGAATtcttaattcatgatattcatgacg
taatattttatacggaagcacctaAAGTAGAGCGGCCGCATGCCACtagt
attttttgtttaaattcaaattaccaaaattagtggcaaacaccCGATCT
TTTTTTGGTTCTTCCATATAAAACATCACGTCATGATTATCATAAATTTC
AGTCATGCGAAAATACAAAAACGGGTTGTCACGAAATGCTATTTATTTTG
AGTGCAATTATTTTATGGTGGAGTTATGAAGGGAAGAGCAGAAAACGCTT
TAGAATCACAAATGTCAAACTGTTTGAGTATTTTGTTCTTTTACTAGATT
CCTCATAGCGTTCGTTTTCCCCGAAATTCCTTCCTATTTTCCACTCCTAC
TTATCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTT
CTCTGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgtta
aaaagaaagttgattgtcgaagaaaaatagatataaaaaaaaatatNCTA
CTTATCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTT
TCACTGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgtt
aaaaagaaagttgattgtggaagaaaaatagatatagaaaaaaaaaattt
taatcacATATCGACGCGATGATAATTTAAAGATACTTCAAAGTTAATTA
GATTCCCAATTGGCGACTAATTGTTAACCTGTACTCGATAGAGTCTTTTA
TGTATGAATTTCTAGCCCTGTCGGACGCCCAACGACCATGCTTTGAAATC
AGTCTTTCGTTGACGTTGTTTTGAGCGGCAGCAGATGCACCACCTGATCT
AAGACTATGTAAACCAAAATTGCCTTTAATTTCAGCCTCCTCTATTTTCt
ctttaaatatttcccttGCTCTCGTGTAAGAAATTCCTTCGGATAAATGG
ATCTTGTgaccttttttgattttaatcaaTCTTGGAACTAAAAAACATTC
AGGGTTGGATGTTAAGGATACGTTTGAAAGCGATAAAAATCTTTCTGCTA
AGTTCACggggcaaaatttggtgttctCATTTCTTGAAACGTAAATTGTA
TTACCATCACGATGCTGATCACTTTTGGAGATTTCTAGAAAAATTTCGAG
GTGGGCTGATTTTATTGTTACGTCCTTCAACTGTACGGTTAATAGTTCAT
CTATTCTGCAGAAGCCAAAAAAGCCCAGGGAGCAAATCAATAGAAAACGT
AAGCTCGTTAATGATTCTGAATCGAAAGTCTTAATTAAGTGTTTGAGGAT
TTCTGGCGTTATAGGTTCTTTAGGATTCTTCGGCTTCTTTTCACAAAGTC
GTAACGTACCTTCGTATGTCATACTCACGAATGGGTGGTCGGTAGGAGAG
TATAGTCCGTTGACGTGAAGACCCCATCTGATGCCGTAGAAGGCTGTTGT
TAATGTACCACTCTTCTTCGAAGTTTTCAATACGAACTTCAGGTAGATTG
CTACGTAAAAGGGGTTTGCTGGAAATGGCATGATTTCTTCTTTATCTTTA
CACCAATCCAACCAGTTTGACCATGCTCGTTGGTATTTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002601XLOC_002601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004613-exon-sc0000047-1491911889:46090..46297TCONS_00004613-exon-sc0000047-1491911889:46090..46297Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:46090..46297TCONS_00004613-exon-sc0000047-1510915933:46090..46297Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:46090..46297TCONS_00004613-exon-sc0000047-1575043694:46090..46297Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:46515..46614TCONS_00004613-exon-sc0000047-1491911889:46515..46614Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:46515..46614TCONS_00004613-exon-sc0000047-1510915933:46515..46614Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:46515..46614TCONS_00004613-exon-sc0000047-1575043694:46515..46614Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:47195..47302TCONS_00004613-exon-sc0000047-1491911889:47195..47302Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:47195..47302TCONS_00004613-exon-sc0000047-1510915933:47195..47302Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:47195..47302TCONS_00004613-exon-sc0000047-1575043694:47195..47302Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:47733..47865TCONS_00004613-exon-sc0000047-1491911889:47733..47865Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:47733..47865TCONS_00004613-exon-sc0000047-1510915933:47733..47865Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:47733..47865TCONS_00004613-exon-sc0000047-1575043694:47733..47865Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:48317..48405TCONS_00004613-exon-sc0000047-1491911889:48317..48405Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:48317..48405TCONS_00004613-exon-sc0000047-1510915933:48317..48405Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:48317..48405TCONS_00004613-exon-sc0000047-1575043694:48317..48405Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:48949..49110TCONS_00004613-exon-sc0000047-1491911889:48949..49110Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:48949..49110TCONS_00004613-exon-sc0000047-1510915933:48949..49110Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:48949..49110TCONS_00004613-exon-sc0000047-1575043694:48949..49110Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:49572..49646TCONS_00004613-exon-sc0000047-1491911889:49572..49646Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:49572..49646TCONS_00004613-exon-sc0000047-1510915933:49572..49646Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:49572..49646TCONS_00004613-exon-sc0000047-1575043694:49572..49646Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:50137..50224TCONS_00004613-exon-sc0000047-1491911889:50137..50224Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:50137..50224TCONS_00004613-exon-sc0000047-1510915933:50137..50224Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:50137..50224TCONS_00004613-exon-sc0000047-1575043694:50137..50224Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:50796..50902TCONS_00004613-exon-sc0000047-1491911889:50796..50902Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:50796..50902TCONS_00004613-exon-sc0000047-1510915933:50796..50902Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:50796..50902TCONS_00004613-exon-sc0000047-1575043694:50796..50902Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:51312..51427TCONS_00004613-exon-sc0000047-1491911889:51312..51427Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:51312..51427TCONS_00004613-exon-sc0000047-1510915933:51312..51427Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:51312..51427TCONS_00004613-exon-sc0000047-1575043694:51312..51427Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:51854..52003TCONS_00004613-exon-sc0000047-1491911889:51854..52003Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:51854..52003TCONS_00004613-exon-sc0000047-1510915933:51854..52003Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:51854..52003TCONS_00004613-exon-sc0000047-1575043694:51854..52003Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1491911889:53636..55679TCONS_00004613-exon-sc0000047-1491911889:53636..55679Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1510915933:53636..55679TCONS_00004613-exon-sc0000047-1510915933:53636..55679Clytia hemisphaericaexon
TCONS_00004613-exon-sc0000047-1575043694:53636..55679TCONS_00004613-exon-sc0000047-1575043694:53636..55679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:46090..55679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.83059	4.82126	4.27714	3.42917	3.08028e-08	0	0	0	0	0	0	0	0.0481192	0	3.23307e-08	0	0.707392	0.26511	0	0	0	0	3.90186	3.83206	0	0	0.63846	0.740489	0.797529	0.0061817
Blast
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BLAST of TCONS_00004613 vs. Swiss-Prot (Human)
Match: HECD2 (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 504.212 bits (1297), Expect = 2.644e-162
Identity = 234/421 (55.58%), Postives = 317/421 (75.30%), Query Frame = 3 
Query:  192 NLSQKRKFSFCQYPFLLSLRAKRFIMQKDSETKMLLEARQSLVNKVRQKQKPSMGMLFLNLDIRRNNLLEDSLKEISKKRADLKKKLRVIFKGEPGIDLGGVSKEWFFLLIQKFFKEDYGMFKYSEKRHNWWFTASSKDSFKEYNLCGVLLGLAIYNGINLDIRFPPIVYKKLLSPAIVPYNNPHAYVGVVPAGVDDLKQVYPEVAQGLRDLLEYDGDVEDDLCQTFMISFTENGQTMNRQLKTNGDTIPVTNLNRQEYVNLYCDYLVNKCIYQQFYSFYHGFHSVCASNALLLLRPEEVETLVIGNPNFNIKDLEKITKYDGFKRTDATIRYFWETVHEFDQKLQRKLLFFSTGSDRIPVGGFKEMKFKITRIAGQNAINMLPMAHTCFNQLCLPSYKSRKDIHEKLLIAISNAEGFGLE 1454
            N     +FSFCQYPF++S+ AK+ I+Q+DSE +M+  ARQSLV+KV ++Q+P M +LFLN+ +RR +L+ DSL E+++KRADLKKKL+V F GE G+D+GG++KEWF LLI++ F  DYGMF Y +  H  WF++   D++ E+ L G+L+GLA+YN I LDIRFPP  YKKLLSP I+P +  +  VG+    VDDL Q+ PE+A GL +LL ++G+VE+D   TF +   E G   +  LK  GD I VTN NR+EYV LY D+L+NK IY+QF +FY+GFHSVCASNAL+LLRPEEVE LV G+P+ ++  L++ T+YDG+ +TD TI+YFW+ V  F   LQ+KLL F+TGSDR+PVGG  ++ FKI++   + + N LP+AHTCFNQLCLP YKS+KD+ +KL+I ISN+EGFGLE
Sbjct:  359 NFGNSHRFSFCQYPFVISVAAKKIIIQRDSEQQMINIARQSLVDKVSRRQRPDMNILFLNMKVRRTHLVSDSLDELTRKRADLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSHCHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQ-NIPVGICNVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKISK--NETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGLE 776
The following BLAST results are available for this feature:
BLAST of TCONS_00004613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HECD22.644e-16255.58Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
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