TCONS_00046869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046869
Unique NameTCONS_00046869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046869 ID=TCONS_00046869|Name=TCONS_00046869|organism=Clytia hemisphaerica|type=transcript|length=827bp
tttcttttcccttTCAAATTATGATATGTTTTTTTCAtcataccaccctg
aaaattccCAAAAAGATATTGAGAGATAGATACTTGCCCTAACCCCTTGC
AGGCcatagtgcccccccccctttataaaggggggattctgattttgcCC
TATTTTTGGAGGTACGAAGGgaaatgaaacattttcttgtcatttctgag
aaatttgaattatggGAAAGGTACAgtattttgaaactttctgacatgaa
cacaagttatttgttaTTGCAGCCTTATTTCCAGATGGTCATCGATGACT
TGCACGTCATTTCTTGAAATGGAAACACACATTATTTGCCGGTGGATGAC
AGGGTTTTTTGGAATTATTTATCACTTGGAAATcctgaaagatttttaaa
aaaggtcCCGGAAAATGCAGGATTTTCCTAATTATTTGGTCATCAGTAtc
agaaaatccataaaatttctATTCTATGCTCTATTTCATTGCTATTTATT
GGGAAATCCAAgattttgccttaaaaaatcttgaatataGCTACAGTATC
GGAAATCATGAAGTTTTGCACCGTTTTTGCAATTGTAAATTTAACCCTAT
TCCTAGACAACCTGATACATAACCACATCCATACCAAACCCTACTAGGTC
GCCTGATTAAATAGAAATAGCTTGATCGATCAGTGAACGGGATCTGAAAA
CAGAATGGAAAAAGACATCCCCGGGGATTATAAACAAATTATCCGATTCA
CCCTCGGGTATCCAATTCACCCCGGGTATCCAATTCACCCCGggtatccg
attcaccccgtccTACGGTACACTATT
Run BLAST on NCBI

transcript from alignment at scaffold_117:492509..493335

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046869 ID=TCONS_00046869|Name=TCONS_00046869|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at scaffold_117:492509..493335 (Clytia hemisphaerica)
AATAGTGTACCGTAggacggggtgaatcggataccCGGGGTGAATTGGAT
ACCCGGGGTGAATTGGATACCCGAGGGTGAATCGGATAATTTGTTTATAA
TCCCCGGGGATGTCTTTTTCCATTCTGTTTTCAGATCCCGTTCACTGATC
GATCAAGCTATTTCTATTTAATCAGGCGACCTAGTAGGGTTTGGTATGGA
TGTGGTTATGTATCAGGTTGTCTAGGAATAGGGTTAAATTTACAATTGCA
AAAACGGTGCAAAACTTCATGATTTCCGATACTGTAGCtatattcaagat
tttttaaggcaaaatcTTGGATTTCCCAATAAATAGCAATGAAATAGAGC
ATAGAATagaaattttatggattttctgaTACTGATGACCAAATAATTAG
GAAAATCCTGCATTTTCCGGgaccttttttaaaaatctttcaggATTTCC
AAGTGATAAATAATTCCAAAAAACCCTGTCATCCACCGGCAAATAATGTG
TGTTTCCATTTCAAGAAATGACGTGCAAGTCATCGATGACCATCTGGAAA
TAAGGCTGCAAtaacaaataacttgtgttcatgtcagaaagtttcaaaat
acTGTACCTTTCccataattcaaatttctcagaaatgacaagaaaatgtt
tcatttcCCTTCGTACCTCCAAAAATAGGgcaaaatcagaatcccccctt
tataaaggggggggggcactatgGCCTGCAAGGGGTTAGGGCAAGTATCT
ATCTCTCAATATCTTTTTGggaattttcagggtggtatgaTGAAAAAAAC
ATATCATAATTTGAaagggaaaagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029913XLOC_029913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046869-exon-scaffold_117-1491911889:492509..493335TCONS_00046869-exon-scaffold_117-1491911889:492509..493335Clytia hemisphaericaexon
TCONS_00046869-exon-scaffold_117-1510915933:492509..493335TCONS_00046869-exon-scaffold_117-1510915933:492509..493335Clytia hemisphaericaexon
TCONS_00046869-exon-scaffold_117-1575043694:492509..493335TCONS_00046869-exon-scaffold_117-1575043694:492509..493335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:492509..493335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175826	0.111962	0.196822	0.191694	0.851587	0.428232	0.442837	0.20845	0.387825	0.539294	0.756097	0.428991	0.464151	0.713702	0.0654002	0.0699648	0.350722	0.266093	0.122051	0.319293	0.168408	0.327877	0	0.121371	0.801264	0.660101	0.395115	0.256293	0.255736	0.129836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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