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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046963 ID=TCONS_00046963|Name=TCONS_00046963|organism=Clytia hemisphaerica|type=transcript|length=3146bp
AATCGTATTTTGAACTTCTTATAGTTGATATTCTTAGAGGATTTTGATTG
TCTGTGTTGATTCTAAACTGTTTCTCCTCCCATCAAAtgagaaaaacttt
gaagaatCCCTATCGCTGCGTGCATCGACGATAAATGAACTCCTATGTAA
GATAATTGCTTAACACCTGCTAATTCGTGAGATAAAGCGGTTTCTATTCT
ATGTAGAAGACTGGCGAGTTTATGCTTCTGTACGTCATCTTTGCATCAAT
CACTCTACTTAGCCATGAATCCTCTTGCCTCGTTAAGAACCAAACAGCTG
CTGAATCTCTCATCGAAAGCGTTCATGATGCAATTTGATTGAATCATTGT
AACTTTTTAATGATTGCAAGAGTTTTGTTTGGTGTGCGCTTTGCCTTGAA
GTGAACCACTTAAGGTATCGTTATGACGTAATATCAAAGTTTCTAATCGC
CAGAcaaagaaatattcaaatattcaaatattcGGTTGTGTGCATTTCGG
CTTGCACACAACCGACTCGAGTCTCTCTGTCCTTGTACTTTAACGGTCTA
GTGAATGGGTGTAGCAATGAATGCAAAGTGCAAACGGTTGAACATCTTTC
TTTACCTGAGTAGAATTTCTGTCTTACCCATCATTGTGCTGCATCCATCA
TAGCATTAACCCCTCAATTTCTCAGTATCAAAACCAAGACTAACATCCTT
TCTGATGTAGGTAATAATGGTCGTGGTGACCTTTTGTTTCAGTTTAGaca
tttctttatcttttttattattCACGTCAGAACCAAGTACTATATTTACT
ATACAATCTAAAATTATCTTATTTGCGTGATCTTTTCTAACCTTCAGTGC
TTTGTGTTTTAAACTACCGGCATTATTCCTTTCGCAAAATTCATTTGGTG
TTTTATTAAAAGTATCACCTTACCAAAGTCAATGTTCCGCACGAAGGAAA
GTCTCCCAACAAAGCAATCTTTTCCCTTCAATTCAGATGAACGAACCCCA
AAAGTATTGTTTTCGTGCTTGTCCGGGCAACTGTTCTGGAATTGATCTCA
TTTTCCGCAGATGAAACATGACCTGTCAAAAGATGTCCttgttggttgtt
tttttcagggTGAAGGGGTTCCcacgggtctgtgagaaggaggtgtggAT
AAGTAGTTCTCCTTCAAAAACATGCTACCATTAATCAATTggtgaatttt
aagaaaaatctaaTCAACGAAATAATAACGAATAGCAAGTAAAGATTACT
GACGTGCGGACCAAGCTCTACAGGGACTTTCAAAATTTGTGCCAAGTGTT
CACCCTAAGCGGAAGTATTATTCATAAAATGACTTTTAATTATATCAATT
TGTATGAAGACATAGGAAGAGACGAAATGATTTTATTATGGAACTGTTAG
GTTCATGCCGTTCGAACGGACGACAAACATCAGCTGATGGTAGGGTGGAC
GAAGTAAAATTTTATATTAACCCCCTGGAGAAAATTTATATTATCATTTA
GCCCTCTGGAAATTGgtcataaaatttatttataccCTGGAAATTTATGT
AACTTCGACTTGGCCCttggaaaatcaaatatctggaGGACGATGCTTAC
TTGTCTAACCCTCTGGAAAATAGTCTCGATTTTACAGGAAGCCctggaaa
ttttccaaataccccctggaaattttaatcaaaataccccctggaaaagt
tcgtccaccCCTATGTATGgacataaaatggaatggcccatttttcCCCT
CTTTTTAAAGAATCAAAAATGCTATTGAATCTATttattttctattgaaa
aatttgcgatttttagcGGGTAAATTTGCGACTCAAATGATGGTCTtaaa
cgttcatttttacacgaACGGTAGTACAACCTTGGGGTAAGACGGCTGTC
AAGTTTATAGGCAAGCAGATGATTTTTCTAACAGATGAGTTTTAACTATG
AGTTTGAGTAATCGACTTAAGACTTAAGAACCTTATCGTCGCAGGATCCA
AAAGCTCAAGGGTTGTCATAAACAGCTGAGAATATAgcaaagaatttgat
aaaactCCTCACCAATTGGGATGTCGAATTGTATCTAATAGAAAACAGGA
TAGGTTTTTGCCACATGTAACACCAACTTTTACATACCATAATTATTTCT
TTGTTCATGGATCGTATCCTTTTGTTCGTCGATTGTTTGTTGTTGCTCTC
TGCAAGAgaaaatacaccaaattttacaTACCAATTGTTTCTTTTGCTCT
TTAATGGTTTGGCTTTGTTGCTGGATCTGATCCTGTTGCTCTCTGGAAGA
GAAAACACATTACCCCGAATTAGCATCGCTTTACATTTctcatttgaaat
tttgttagGCCTTGTAGAGCAATTCGGCAATATTTagtctgaaaaagtta
agatctTCATAAAAAGAATACATTTGTTTAAGCAAGAGCAGACAagagaa
ttattttttgaaatataaaataatgTAAAGGGATTTGGTCTTatgaaaac
tgaaaagaaaGAGTCGATAATTTATTatgaagaatttttaaagatataCT
ATCTTGGTTAAAAGGGCTTAAAAATAGCCTTTGAAACAAAGGAATAAAGT
ATCACATTAAACTTGGAGGCAGGAACAAATTTCGTTAGACAACATCTCTG
CTCCCCCCAAACATCAAATAAAGCAGAGCTTTTCAACCCGACTTGCTCTG
TTTAGAAGTACGATCCCAAACAAGGGAGCCAACAAAACTTAAGGGttgca
aaagaaactttgaGACGAAGACGAAATTAAAGTGAtgagaaaaattataa
aaagccAATTGAATAGTTTAATTGTTTTAAACTTGAATAATTAAAATTgc
attaaatttattttatgtaCAAAGAATAATTAAAATCTTTGGTACGAATC
GCGTAGTTGAATCttcattaaaatttgaaataaaacgaagaaagaaaaat
aatcatataaacaaagcaaaaaatagACAGAAGttgaatactctcgggta
cctaatagccgtcccccccccccgctaattaatttttcgaaaattttcca
atcaggacattcttattccaaccccccccgcttattaatttttggaaaaa
tatttttgaaagttccctcttttgtcctaattctgctgtattagcc Run BLAST on NCBI transcript from alignment at scaffold_119:44691..47836+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046963 ID=TCONS_00046963|Name=TCONS_00046963|organism=Clytia hemisphaerica|type=transcript|length=3146bp|location=Sequence derived from alignment at scaffold_119:44691..47836+ (Clytia hemisphaerica)
AATCGTATTTTGAACTTCTTATAGTTGATATTCTTAGAGGATTTTGATTG
TCTGTGTTGATTCTAAACTGTTTCTCCTCCCATCAAAtgagaaaaacttt
gaagaatCCCTATCGCTGCGTGCATCGACGATAAATGAACTCCTATGTAA
GATAATTGCTTAACACCTGCTAATTCGTGAGATAAAGCGGTTTCTATTCT
ATGTAGAAGACTGGCGAGTTTATGCTTCTGTACGTCATCTTTGCATCAAT
CACTCTACTTAGCCATGAATCCTCTTGCCTCGTTAAGAACCAAACAGCTG
CTGAATCTCTCATCGAAAGCGTTCATGATGCAATTTGATTGAATCATTGT
AACTTTTTAATGATTGCAAGAGTTTTGTTTGGTGTGCGCTTTGCCTTGAA
GTGAACCACTTAAGGTATCGTTATGACGTAATATCAAAGTTTCTAATCGC
CAGAcaaagaaatattcaaatattcaaatattcGGTTGTGTGCATTTCGG
CTTGCACACAACCGACTCGAGTCTCTCTGTCCTTGTACTTTAACGGTCTA
GTGAATGGGTGTAGCAATGAATGCAAAGTGCAAACGGTTGAACATCTTTC
TTTACCTGAGTAGAATTTCTGTCTTACCCATCATTGTGCTGCATCCATCA
TAGCATTAACCCCTCAATTTCTCAGTATCAAAACCAAGACTAACATCCTT
TCTGATGTAGGTAATAATGGTCGTGGTGACCTTTTGTTTCAGTTTAGaca
tttctttatcttttttattattCACGTCAGAACCAAGTACTATATTTACT
ATACAATCTAAAATTATCTTATTTGCGTGATCTTTTCTAACCTTCAGTGC
TTTGTGTTTTAAACTACCGGCATTATTCCTTTCGCAAAATTCATTTGGTG
TTTTATTAAAAGTATCACCTTACCAAAGTCAATGTTCCGCACGAAGGAAA
GTCTCCCAACAAAGCAATCTTTTCCCTTCAATTCAGATGAACGAACCCCA
AAAGTATTGTTTTCGTGCTTGTCCGGGCAACTGTTCTGGAATTGATCTCA
TTTTCCGCAGATGAAACATGACCTGTCAAAAGATGTCCttgttggttgtt
tttttcagggTGAAGGGGTTCCcacgggtctgtgagaaggaggtgtggAT
AAGTAGTTCTCCTTCAAAAACATGCTACCATTAATCAATTggtgaatttt
aagaaaaatctaaTCAACGAAATAATAACGAATAGCAAGTAAAGATTACT
GACGTGCGGACCAAGCTCTACAGGGACTTTCAAAATTTGTGCCAAGTGTT
CACCCTAAGCGGAAGTATTATTCATAAAATGACTTTTAATTATATCAATT
TGTATGAAGACATAGGAAGAGACGAAATGATTTTATTATGGAACTGTTAG
GTTCATGCCGTTCGAACGGACGACAAACATCAGCTGATGGTAGGGTGGAC
GAAGTAAAATTTTATATTAACCCCCTGGAGAAAATTTATATTATCATTTA
GCCCTCTGGAAATTGgtcataaaatttatttataccCTGGAAATTTATGT
AACTTCGACTTGGCCCttggaaaatcaaatatctggaGGACGATGCTTAC
TTGTCTAACCCTCTGGAAAATAGTCTCGATTTTACAGGAAGCCctggaaa
ttttccaaataccccctggaaattttaatcaaaataccccctggaaaagt
tcgtccaccCCTATGTATGgacataaaatggaatggcccatttttcCCCT
CTTTTTAAAGAATCAAAAATGCTATTGAATCTATttattttctattgaaa
aatttgcgatttttagcGGGTAAATTTGCGACTCAAATGATGGTCTtaaa
cgttcatttttacacgaACGGTAGTACAACCTTGGGGTAAGACGGCTGTC
AAGTTTATAGGCAAGCAGATGATTTTTCTAACAGATGAGTTTTAACTATG
AGTTTGAGTAATCGACTTAAGACTTAAGAACCTTATCGTCGCAGGATCCA
AAAGCTCAAGGGTTGTCATAAACAGCTGAGAATATAgcaaagaatttgat
aaaactCCTCACCAATTGGGATGTCGAATTGTATCTAATAGAAAACAGGA
TAGGTTTTTGCCACATGTAACACCAACTTTTACATACCATAATTATTTCT
TTGTTCATGGATCGTATCCTTTTGTTCGTCGATTGTTTGTTGTTGCTCTC
TGCAAGAgaaaatacaccaaattttacaTACCAATTGTTTCTTTTGCTCT
TTAATGGTTTGGCTTTGTTGCTGGATCTGATCCTGTTGCTCTCTGGAAGA
GAAAACACATTACCCCGAATTAGCATCGCTTTACATTTctcatttgaaat
tttgttagGCCTTGTAGAGCAATTCGGCAATATTTagtctgaaaaagtta
agatctTCATAAAAAGAATACATTTGTTTAAGCAAGAGCAGACAagagaa
ttattttttgaaatataaaataatgTAAAGGGATTTGGTCTTatgaaaac
tgaaaagaaaGAGTCGATAATTTATTatgaagaatttttaaagatataCT
ATCTTGGTTAAAAGGGCTTAAAAATAGCCTTTGAAACAAAGGAATAAAGT
ATCACATTAAACTTGGAGGCAGGAACAAATTTCGTTAGACAACATCTCTG
CTCCCCCCAAACATCAAATAAAGCAGAGCTTTTCAACCCGACTTGCTCTG
TTTAGAAGTACGATCCCAAACAAGGGAGCCAACAAAACTTAAGGGttgca
aaagaaactttgaGACGAAGACGAAATTAAAGTGAtgagaaaaattataa
aaagccAATTGAATAGTTTAATTGTTTTAAACTTGAATAATTAAAATTgc
attaaatttattttatgtaCAAAGAATAATTAAAATCTTTGGTACGAATC
GCGTAGTTGAATCttcattaaaatttgaaataaaacgaagaaagaaaaat
aatcatataaacaaagcaaaaaatagACAGAAGttgaatactctcgggta
cctaatagccgtcccccccccccgctaattaatttttcgaaaattttcca
atcaggacattcttattccaaccccccccgcttattaatttttggaaaaa
tatttttgaaagttccctcttttgtcctaattctgctgtattagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046963-exon-scaffold_119-1491911889:44691..47836 | TCONS_00046963-exon-scaffold_119-1491911889:44691..47836 | Clytia hemisphaerica | exon |
| TCONS_00046963-exon-scaffold_119-1510915933:44691..47836 | TCONS_00046963-exon-scaffold_119-1510915933:44691..47836 | Clytia hemisphaerica | exon |
| TCONS_00046963-exon-scaffold_119-1575043694:44691..47836 | TCONS_00046963-exon-scaffold_119-1575043694:44691..47836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_119 | supercontig | scaffold_119:44691..47836 + |
Blast
The following BLAST results are available for this feature:
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