TCONS_00047081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047081
Unique NameTCONS_00047081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047081 ID=TCONS_00047081|Name=TCONS_00047081|organism=Clytia hemisphaerica|type=transcript|length=650bp
GCTATATCTTCGACCATGAGTCATAATAGGTAGGCTGAACCGTCTCATTT
CTAAAGAATGACGACTGCTGTTCCTTGAAAGAGTTGCCGAGTGAGCAGCC
TTAAGTTTGGATGTACGTGTCCGAATCAAAACTATAGTACTGTTTAGGCC
GGAATAGAAATACCACGGAACTGCCATCCAGATATGTATGTATGCCATTG
TTTTTTCATGTTCCGGTGATACAAGAAAATAACCGGCTAAAATACAGTTC
TTCAAGATAATTGGTGTATACGCGAGTACCATTGCTATTGAAATATAGCA
TATTGTTTTTGTGGCCCTACGATTGTAGTTGACCTCCATTTTGTGGGCGG
ACACTTTACGTATACATTTTGCACGCTTATTGACAAAACGCAATAAACGC
ATGTTGATTAAAAGCATGATGACAAGAAACAAGGTGAGACACACTGAAAG
AATGATCAATAAAATGGGTATAAAACCTTCGTCGAATTTAATCAAAAATG
CGTAACTACATACGTTGGATACCAGGGCGGCCGTCATACACGCCACGACG
TAGATTTTAAACGAATGTTTTACGTGGAATCGTTTTTGTAAGTTACTTTT
ACAGATCTTCAGATAACGATCTATTCCCATTCCCAAAGCCATCAGGACGG
Run BLAST on NCBI

protein sequence of TCONS_00047081-protein

>TCONS_00047081-protein ID=TCONS_00047081-protein|Name=TCONS_00047081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
VLMALGMGIDRYLKICKSNLQKRFHVKHSFKIYVVACMTAALVSNVCSYA
FLIKFDEGFIPILLIILSVCLTLFLVIMLLINMRLLRFVNKRAKCIRKVS
AHKMEVNYNRRATKTICYISIAMVLAYTPIILKNCILAGYFLVSPEHEKT
MAYIHIWMAVPWYFYSGLNSTIVLIRTRTSKLKAAHSATLSRNSSRHSLE
MRRFSLPIMTHGRRYS
Run BLAST on NCBI

transcript from alignment at scaffold_120:49737..50386

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047081 ID=TCONS_00047081|Name=TCONS_00047081|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_120:49737..50386 (Clytia hemisphaerica)
CCGTCCTGATGGCTTTGGGAATGGGAATAGATCGTTATCTGAAGATCTGT
AAAAGTAACTTACAAAAACGATTCCACGTAAAACATTCGTTTAAAATCTA
CGTCGTGGCGTGTATGACGGCCGCCCTGGTATCCAACGTATGTAGTTACG
CATTTTTGATTAAATTCGACGAAGGTTTTATACCCATTTTATTGATCATT
CTTTCAGTGTGTCTCACCTTGTTTCTTGTCATCATGCTTTTAATCAACAT
GCGTTTATTGCGTTTTGTCAATAAGCGTGCAAAATGTATACGTAAAGTGT
CCGCCCACAAAATGGAGGTCAACTACAATCGTAGGGCCACAAAAACAATA
TGCTATATTTCAATAGCAATGGTACTCGCGTATACACCAATTATCTTGAA
GAACTGTATTTTAGCCGGTTATTTTCTTGTATCACCGGAACATGAAAAAA
CAATGGCATACATACATATCTGGATGGCAGTTCCGTGGTATTTCTATTCC
GGCCTAAACAGTACTATAGTTTTGATTCGGACACGTACATCCAAACTTAA
GGCTGCTCACTCGGCAACTCTTTCAAGGAACAGCAGTCGTCATTCTTTAG
AAATGAGACGGTTCAGCCTACCTATTATGACTCATGGTCGAAGATATAGC

Coding sequence (CDS) from alignment at scaffold_120:49737..50386

>TCONS_00047081 ID=TCONS_00047081|Name=TCONS_00047081|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_120:49737..50386 (Clytia hemisphaerica)
GTCCTGATGGCTTTGGGAATGGGAATAGATCGTTATCTGAAGATCTGTAA
AAGTAACTTACAAAAACGATTCCACGTAAAACATTCGTTTAAAATCTACG
TCGTGGCGTGTATGACGGCCGCCCTGGTATCCAACGTATGTAGTTACGCA
TTTTTGATTAAATTCGACGAAGGTTTTATACCCATTTTATTGATCATTCT
TTCAGTGTGTCTCACCTTGTTTCTTGTCATCATGCTTTTAATCAACATGC
GTTTATTGCGTTTTGTCAATAAGCGTGCAAAATGTATACGTAAAGTGTCC
GCCCACAAAATGGAGGTCAACTACAATCGTAGGGCCACAAAAACAATATG
CTATATTTCAATAGCAATGGTACTCGCGTATACACCAATTATCTTGAAGA
ACTGTATTTTAGCCGGTTATTTTCTTGTATCACCGGAACATGAAAAAACA
ATGGCATACATACATATCTGGATGGCAGTTCCGTGGTATTTCTATTCCGG
CCTAAACAGTACTATAGTTTTGATTCGGACACGTACATCCAAACTTAAGG
CTGCTCACTCGGCAACTCTTTCAAGGAACAGCAGTCGTCATTCTTTAGAA
ATGAGACGGTTCAGCCTACCTATTATGACTCATGGTCGAAGATATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030015XLOC_030015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047081-exon-scaffold_120-1491911889:49737..50386TCONS_00047081-exon-scaffold_120-1491911889:49737..50386Clytia hemisphaericaexon
TCONS_00047081-exon-scaffold_120-1510915933:49737..50386TCONS_00047081-exon-scaffold_120-1510915933:49737..50386Clytia hemisphaericaexon
TCONS_00047081-exon-scaffold_120-1575043694:49737..50386TCONS_00047081-exon-scaffold_120-1575043694:49737..50386Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047081-proteinTCONS_00047081-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:49737..50386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804484	0.0784499	0.455439	0.356461	0	0.0857296	0.103429	0.193658	0	0	0	0	0.0535037	0	0	0.098046	0	0	0.0855184	0.0894889	0.155564	0	0.368962	0.25158	0	0.0770866	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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