TCONS_00047082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047082
Unique NameTCONS_00047082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047082 ID=TCONS_00047082|Name=TCONS_00047082|organism=Clytia hemisphaerica|type=transcript|length=804bp
tgaaaaccagactccatcagatttaaaaaaataccattttacatcattca
gtaaaaaattagaaaaaaaaaccaaGGTTATCGTGAGAAATGATCATTTT
CCCTAAAGAGGATAACAGGAAATTTCCCCGaatattttaaggaaaaatga
tttttacagggaaaagaaattttccaaaaaaacgaCACTTTACACTTAGG
CActttttgacccaaatttgcccaaaaaaatatttttttgaaaatcaggc
tgtATCACTTTTTGGGTTCTGTGCTTTTGCATCATTATGAAAAAACTAAT
aggccaatcctgagaaaagctggtaacagacaaacgAACAAACAAGCATA
TGTTAATTTTAAAGGACCTCTGAGATCAGAGTATTTTCAGGGTTTATCTA
GAACTACTTAGGAGAAGAGAGTATTTTACAGACAGTTAGACACTCTAGGA
AATccagctttcagaaaaaacaataattatcagtcatctacaggatgaaA
CAGGGAaacctttttttcgaaaatcaggaaATAAGTAGGGGGAaactttt
cttaaaaatcgaacATGCATGAGAAATCAAATAGTGCGAGACAAAGTGGA
AATATACGAGTCTCACCCTCATTTGGAAATGCATGAGTCTTACACTCACT
GCTTGAGAAATGGCACCTCTGTGTGTTTTGATTTAGCTATATATTAATTT
TGTCTCTCTTGAAAATCAGAAATGATAGACCTTTTGACAATTCCATCCAT
TTTCTTGgattaataataaaaataaattaggTTTGGAAAATATTATGTTG
CCGC
Run BLAST on NCBI

transcript from alignment at scaffold_120:82935..83738

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047082 ID=TCONS_00047082|Name=TCONS_00047082|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_120:82935..83738 (Clytia hemisphaerica)
GCGGCAACATAATATTTTCCAAAcctaatttatttttattattaatcCAA
GAAAATGGATGGAATTGTCAAAAGGTCTATCATTTCTGATTTTCAAGAGA
GACAAAATTAATATATAGCTAAATCAAAACACACAGAGGTGCCATTTCTC
AAGCAGTGAGTGTAAGACTCATGCATTTCCAAATGAGGGTGAGACTCGTA
TATTTCCACTTTGTCTCGCACTATTTGATTTCTCATGCATgttcgatttt
taagaaaagttTCCCCCTACTTATttcctgattttcgaaaaaaaggttTC
CCTGTttcatcctgtagatgactgataattattgttttttctgaaagctg
gATTTCCTAGAGTGTCTAACTGTCTGTAAAATACTCTCTTCTCCTAAGTA
GTTCTAGATAAACCCTGAAAATACTCTGATCTCAGAGGTCCTTTAAAATT
AACATATGCTTGTTTGTTcgtttgtctgttaccagcttttctcaggattg
gcctATTAGTTTTTTCATAATGATGCAAAAGCACAGAACCCAAAAAGTGA
Tacagcctgattttcaaaaaaatatttttttgggcaaatttgggtcaaaa
agTGCCTAAGTGTAAAGTGtcgtttttttggaaaatttcttttccctgta
aaaatcatttttccttaaaatattCGGGGAAATTTCCTGTTATCCTCTTT
AGGGAAAATGATCATTTCTCACGATAACCttggtttttttttctaatttt
ttactgaatgatgtaaaatggtatttttttaaatctgatggagtctggtt
ttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030016XLOC_030016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047082-exon-scaffold_120-1491911889:82935..83738TCONS_00047082-exon-scaffold_120-1491911889:82935..83738Clytia hemisphaericaexon
TCONS_00047082-exon-scaffold_120-1510915933:82935..83738TCONS_00047082-exon-scaffold_120-1510915933:82935..83738Clytia hemisphaericaexon
TCONS_00047082-exon-scaffold_120-1575043694:82935..83738TCONS_00047082-exon-scaffold_120-1575043694:82935..83738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:82935..83738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178879	0.232581	0.472585	0.2642	0.482458	0.190622	0.153318	0.0717674	0.502461	0.186714	0	0.635374	0.0396557	0.906022	0.135431	0.145339	0.268568	0.183516	0.0633842	0.331635	0.518852	0.590515	0	0	0.192055	0.742752	0.490558	0.174512	0.264723	0.134855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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