|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047479 ID=TCONS_00047479|Name=TCONS_00047479|organism=Clytia hemisphaerica|type=transcript|length=1511bp
AACGTATATCTGGAACTGATAATGATATTCTACTTGTTTGCCGGTCTGTT
TTCACCTTTGCAGTGATTTGTGCAGAAAATCTTCTTTTTATCGTGAAGAG
ATAAGATTGTATTGGGTAGTTTGACCGTCAAAACAACCAGCCAAGATGTT
GTGCGAAATGATGGAATACACTGACTCGTTCATCGTCACTTGGCTCGCAA
TCGCCGTTGGCGCCATTTTACTCAATTTCACGGTCTCTGGACccgtcttt
tatttttattactgGCCTTCACAAGTGACTTTCGAAAAATGGCAATTCAA
ATCGAACACTAAATTTCCAACGCCCGCTAAAGTAAGAGATGAGATCGTGG
CTATGATGAAGGGCGTGTTATGTGCCGCCATTTGCCCCGCACTCTGTCTT
TATCTGGCCCGCCATGGCATGTCAAAGGCGTATTGTGGATGGGGTGGATA
TTCAATTTTCCATCACGCctcaatgtttgtttttatcgTCATGGTGTCCG
ACTTCTACGAATATATGTATCATCGATTAGGACataccaatttcaaattt
tgggaCTTTCACAAACATCATCATGTGTTTTACAACCCCTCACCCTTCGC
TGTTGTGGCCGACGAATGGGTTGACCAATTCATGCGTGCTTTACTTCTTT
TGGTGTTACCTATAGTAATGCCTATTAATATCGATGTCATGTTTTCGATT
TACGCCATTCAATTCTATGGTTACGGTGTTTATTTGCATTGGGGTTACGA
GAGCCCTTATTTGAGCGCTCACAATCGGTTTGTCAACACCTCGTTCCAGC
ATTACTGTCATCACGCGAAATCATTGATGAATACACCATACCATTGTGGA
TTTCATTTCAAACTCTGGGATCAGATGTTCGACACTTGTTATcctaaaga
aaaatgtttttgtgctGAGTGTTCACGAAATAAAGGTGAACGCACCAAag
aagcttttgaaaaaattaaaattccagATTATTCTGAACTGTTTTCATGG
AAAATGTGGTCTTGCTATTTTGTATAGATTTTCAATTTGATAAGGCTTTA
CTTTTTTCTTGGACCTTTTTCATGCCCCGGATCAATACCGTAAAAAGTTA
AGTAGCTAGTTTTCAATTAACTAAGAGGAATTCTTAGGActttttacttt
cgttttcgaactGTCTGTCGATCTATTTAGGCCTTTTAATTTTGCCTCGT
GGCcctgttttgttttaaataaatttgacaAGTCCACCAATTTAGAcgcc
cctttctcacagacccggaagtttttttatcagccagtggagataaaaat
aacggattgAATCTCAATGGGGATCGATTTTCCCATATTctttatgactg
gggatttcgattcctttgtttttaagtTACAAAATTCAATGGGAATGAGA
AAAACagtaaatattttgcaataaggattagtttattttattattttttg
tggGGACAGAAATTGGAGAATCATTTTCACCTGAGatgatattttgacca
attttcccaGT Run BLAST on NCBI protein sequence of TCONS_00047479-protein >TCONS_00047479-protein ID=TCONS_00047479-protein|Name=TCONS_00047479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MLCEMMEYTDSFIVTWLAIAVGAILLNFTVSGPVFYFYYWPSQVTFEKWQ
FKSNTKFPTPAKVRDEIVAMMKGVLCAAICPALCLYLARHGMSKAYCGWG
GYSIFHHASMFVFIVMVSDFYEYMYHRLGHTNFKFWDFHKHHHVFYNPSP
FAVVADEWVDQFMRALLLLVLPIVMPINIDVMFSIYAIQFYGYGVYLHWG
YESPYLSAHNRFVNTSFQHYCHHAKSLMNTPYHCGFHFKLWDQMFDTCYP
KEKCFCAECSRNKGERTKEAFEKIKIPDYSELFSWKMWSCYFV Run BLAST on NCBI transcript from alignment at scaffold_13:65640..68908+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047479 ID=TCONS_00047479|Name=TCONS_00047479|organism=Clytia hemisphaerica|type=transcript|length=3269bp|location=Sequence derived from alignment at scaffold_13:65640..68908+ (Clytia hemisphaerica)
AACGTATATCTGGAACTGATAATGATATTCTAGTAAGTAGACGTAGAAAA
ACATGAAAGTCTCCCTTTTCACAgtactcttttttataagaacaaactaa
aacacctattttcttaggaaaacactcacaaaatagtaaaaataagaaca
tgttaagaacatttttaggcttaaaactcaaaaagtttaagaacatccga
aggcttcatgTTCTTAAAAAGTTGAAAGCATCAATACGTAGAGAGAGGAT
TAATTTTCTTGATCGTTTAACTTGGTCTAATGGTGAAGGCTTATAAATGT
TATTGATTTTCTTAGTATGATACAAgtagaaaattaaaattattataAAC
ACCCTCGGTTCTTATACATGCGCTTTAATaaaaatggtgtaaatccattt
catcatggatattcttaactttttgggaaaatcatcctaaaatattctta
cagcattcttaggttaggatcctaattcagaccagatttaacatttagta
catacgtctcaagcataaaatggaatttttgtgaaaggagcgAACCGttc
ttgggggtaattgacaattaatttatatttttgaaaatgctctaaaaatg
acattcttagcttgagtagccaaattccatgatggtgatattcttagcat
attcttgatttttggccattttcatcatggacattcttataaagtgtatt
cttataaaaaagcgtgtaaaattgttcttataaaaagacgatGGATATTG
TTCTTAGAAGATATAGTTATAAATGCTTACAATACAAAAATTGTCAATGC
CATGTCATCTCTCATTTCAAACATATGATTGGCTTGTGATTAATAATATA
TCACGTGACAGTATACGTTAGATAGAGAACTCCCCCTTCACCCTTCTACG
TTCAAAATGGAACCACCTTTCCATCGTCTGATTCAAGTATAGAATATTAT
TATCCAAGAGTTAGAATTTGAACTTTTTTCATTATATATAGATGAAAACC
CCCTAGTCGGAATACAGTATAAAGGTCGTCAATAGATATGAAAAACCTTA
TTTCATAATTCATGAACTATTCTACTCAGTTTAGCTTGTTTGCCGGTCTG
TTTTCACCTTTGCAGTGATTTGTGCAGAAAATCTTCTTTTTATCGTGAAG
AGATAAGATTGTATTGGGTGAGTGTTTGGttatcttttgaattttttgaa
tacTTGTGGCTTTCTTTAATTACGACTTTACTGGCACTGTTCACCTTTAT
CTTAGCTGACTAACAGTTCCAATTTGAATTTAGTTTAAATTCACTGCATT
TTGCGTCACCCGACTAACCTGTTAACAGATTGCgtattttctggcccagt
acgctGCTCTAAAGACGTGGTTCAGTGATCTTTAGAGCTTCATTGTGTTG
CGCTAAGAAAACTCCAcgtctgttatcaggttacccgCGACCGATAAGCA
AAAAAGGACTTAAAGTTAATTTCATGTTTGCTGCGCTACACCGCTCGCGC
TACGATACATGTAAATTTTTACAAACGCATATCtaacaaaaccttttttt
tcacCCAACTGACTCATATTCTTAAAGTAAAATAGACGCGAGATAAGTAT
ATTAGTGACTCCTATCTGAACCTGAAAGTTTTCTGCTGTCTAAGTTTTCT
TACAACTTTCCGCAGTTCTGCGTCGATATCCTTACAAGgcacaaaataga
aaaatatattcCATGGTAGCAAACCCACAACTTTCTAAACTGCAAAATGG
TGTGAATTAAATGAGCTAAATTCGCATTTTTGATGCGCTTGTCATCTTTC
TCACTTACACATATGAATCCTGCAAAAACTAAATCTCTCAACTTTTAAGC
ACAATCTCATCTTTCATTTGTAGGTAGTTTGACCGTCAAAACAACCAGCC
AAGATGTTGTGCGAAATGATGGAATACACTGACTCGTTCATCGTCACTTG
GCTCGCAATCGCCGTTGGCGCCATTTTACTCAATTTCACGGTCTCTGGAC
ccgtcttttatttttattactgGCCTTCACAAGTGACTTTCGAAAAATGG
CAATTCAAATCGAACACTAAATTTCCAACGCCCGCTAAAGTAAGAGATGA
GATCGTGGCTATGATGAAGGGCGTGTTATGTGCCGCCATTTGCCCCGCAC
TCTGTCTTTATCTGGCCCGCCATGGCATGTCAAAGGCGTATTGTGGATGG
GGTGGATATTCAATTTTCCATCACGCctcaatgtttgtttttatcgTCAT
GGTGTCCGACTTCTACGAATATATGTATCATCGATTAGGACataccaatt
tcaaattttgggaCTTTCACAAACATCATCATGTGTTTTACAACCCCTCA
CCCTTCGCTGTTGTGGCCGACGAATGGGTTGACCAATTCATGCGTGCTTT
ACTTCTTTTGGTGTTACCTATAGTAATGCCTATTAATATCGATGTCATGT
TTTCGATTTACGCCATTCAATTCTATGGTTACGGTGTTTATTTGCATTGG
GGTTACGAGAGCCCTTATTTGAGCGCTCACAATCGGTTTGTCAACACCTC
GTTCCAGCATTACTGTCATCACGCGAAATCATTGATGAATACACCATACC
ATTGTGGATTTCATTTCAAACTCTGGGATCAGATGTTCGACACTTGTTAT
cctaaagaaaaatgtttttgtgctGAGTGTTCACGAAATAAAGGTGAACG
CACCAAagaagcttttgaaaaaattaaaattccagATTATTCTGAACTGT
TTTCATGGAAAATGTGGTCTTGCTATTTTGTATAGATTTTCAATTTGATA
AGGCTTTACTTTTTTCTTGGACCTTTTTCATGCCCCGGATCAATACCGTA
AAAAGTTAAGTAGCTAGTTTTCAATTAACTAAGAGGAATTCTTAGGActt
tttactttcgttttcgaactGTCTGTCGATCTATTTAGGCCTTTTAATTT
TGCCTCGTGGCcctgttttgttttaaataaatttgacaAGTCCACCAATT
TAGAcgcccctttctcacagacccggaagtttttttatcagccagtggag
ataaaaataacggattgAATCTCAATGGGGATCGATTTTCCCATATTctt
tatgactggggatttcgattcctttgtttttaagtTACAAAATTCAATGG
GAATGAGAAAAACagtaaatattttgcaataaggattagtttattttatt
attttttgtggGGACAGAAATTGGAGAATCATTTTCACCTGAGatgatat
tttgaccaattttcccaGT Coding sequence (CDS) from alignment at scaffold_13:65640..68908+ >TCONS_00047479 ID=TCONS_00047479|Name=TCONS_00047479|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_13:65640..68908+ (Clytia hemisphaerica)
ATGTTGTGCGAAATGATGGAATACACTGACTCGTTCATCGTCACTTGGCT
CGCAATCGCCGTTGGCGCCATTTTACTCAATTTCACGGTCTCTGGACccg
tcttttatttttattactgGCCTTCACAAGTGACTTTCGAAAAATGGCAA
TTCAAATCGAACACTAAATTTCCAACGCCCGCTAAAGTAAGAGATGAGAT
CGTGGCTATGATGAAGGGCGTGTTATGTGCCGCCATTTGCCCCGCACTCT
GTCTTTATCTGGCCCGCCATGGCATGTCAAAGGCGTATTGTGGATGGGGT
GGATATTCAATTTTCCATCACGCctcaatgtttgtttttatcgTCATGGT
GTCCGACTTCTACGAATATATGTATCATCGATTAGGACataccaatttca
aattttgggaCTTTCACAAACATCATCATGTGTTTTACAACCCCTCACCC
TTCGCTGTTGTGGCCGACGAATGGGTTGACCAATTCATGCGTGCTTTACT
TCTTTTGGTGTTACCTATAGTAATGCCTATTAATATCGATGTCATGTTTT
CGATTTACGCCATTCAATTCTATGGTTACGGTGTTTATTTGCATTGGGGT
TACGAGAGCCCTTATTTGAGCGCTCACAATCGGTTTGTCAACACCTCGTT
CCAGCATTACTGTCATCACGCGAAATCATTGATGAATACACCATACCATT
GTGGATTTCATTTCAAACTCTGGGATCAGATGTTCGACACTTGTTATcct
aaagaaaaatgtttttgtgctGAGTGTTCACGAAATAAAGGTGAACGCAC
CAAagaagcttttgaaaaaattaaaattccagATTATTCTGAACTGTTTT
CATGGAAAATGTGGTCTTGCTATTTTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047479-exon-scaffold_13-1491911889:65640..65671 | TCONS_00047479-exon-scaffold_13-1491911889:65640..65671 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1510915933:65640..65671 | TCONS_00047479-exon-scaffold_13-1510915933:65640..65671 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1575043694:65640..65671 | TCONS_00047479-exon-scaffold_13-1575043694:65640..65671 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1491911889:66724..66806 | TCONS_00047479-exon-scaffold_13-1491911889:66724..66806 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1510915933:66724..66806 | TCONS_00047479-exon-scaffold_13-1510915933:66724..66806 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1575043694:66724..66806 | TCONS_00047479-exon-scaffold_13-1575043694:66724..66806 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1491911889:67513..68908 | TCONS_00047479-exon-scaffold_13-1491911889:67513..68908 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1510915933:67513..68908 | TCONS_00047479-exon-scaffold_13-1510915933:67513..68908 | Clytia hemisphaerica | exon |
| TCONS_00047479-exon-scaffold_13-1575043694:67513..68908 | TCONS_00047479-exon-scaffold_13-1575043694:67513..68908 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:65640..68908 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006694 | Fatty_acid_hydroxylase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008610 | lipid biosynthetic process |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008610 |
lipid biosynthetic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
|
