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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047506 ID=TCONS_00047506|Name=TCONS_00047506|organism=Clytia hemisphaerica|type=transcript|length=3548bp
aaagtttaaaaaattcttgTTTGGAATCAGAGACTGTCACTGAATAACTT
TTGGTGAAAAAGAGACATGTAGTAATATGAGATACAAATCCTTTCATGCA
TCTTCATTAGCCGTTCTTTATTCCCCTTTCATGTCCAATAAATAAATAGT
TCTAAAATGAAGCTCTAAATGAAAAACCAAATATTTAGTAGCAAAGGCta
ttctcgtttgtttgaaaataagAGAGACTTGAGTTTCAATGTAGGCAATC
AATTTTTCATCCTCACTCTGGAACGTTGGCTTTGATGTTTTCAAGTGAAT
GAGTCTAataaagaatttcaatttctgtAAGAAGATCACGTGTTTAACAG
ATGGTATATATCAAAACGCTTCTCAACTGTTAGCCGACTGATTCGTCAAG
TTTTGAACTAATTGGATTTTGAAGAtgttttgctttattttgacctattg
agaataagttttcactttcttcttaTCACTTATGTCACTTATcacaattt
caagaaaatgcttTACAGTATGTTACCACAAAGCTTGAAAATCGCTCTTT
TAGCTGAATTTGTTTTATTCCCGTTCGGCATTTTACTACATGCTTTGGCC
GTCTTTGTTATTCACCGAACTAATGAAGACGCTGTGTTTACAGAGATACA
AAAAATCTACTTGATCAATCTGAGTTTGGTTGAAGTATTATTATCGTTGA
CCCAAATGATAAGTAAATCCTTCAATTTCTTCAGCGAAATGTCTGGCTCG
AGTTTTGAGTTTATATTCGAATTACTTCACGCAAGTTTCTTCTCCGTATG
GTACATGCTCATCATGGTTCTGATATCGTTCGACCGATTTCTAGTCGTTT
ATTTAAACCTCAGATATCCATCTTTATGGACTCCAAAGAAAGCCAAGATT
GTTGTTACTCTGCTACCATTTTTGTCGTTAGTCATTACCATGGTTGCAAA
TTTCGTCATCAAGAACAATCATCTTATGAACGATCGCTCGAATACATTGA
CTATTTATCGAATGTTTCCTTTCATTGATATGACATGTGCCCTTATATTT
TTCTCAGCGTACGGTTACTTACTGCATCGGCTTCTTTATTACAGAAAATT
TGCTGTCAGATGTCAAGTTATTCGTGTCGATGTCCTTAATCACACCTCTC
AAATGACAAATCGAAGCCACTCAACCGTTCAGAATTCAACTAGTGGAACC
TCGAGTGACTCGGCTTCCTCAACAAGACCGTTGAAAGTGAATTTCTTCTA
CCCAGCATTGCTTGTTATCTCCTTTATATTATTCTGGATGGTTCCGAATT
GGATTCATTATCTCTACTATAAAGACGATCAGAAAATCCCGGTTTCATTC
CACTGGGCAGTTGATTTGTGCTACCCTATAGCTTTTATACTTGATGCGTT
TATTTACATATTCTCATCGAAGAAGATCAGAAACTCGTTGCGCCGTTTCT
TGAAACGAACGAGAGGCTATAATACTAATTCCTAGAAAATCACGACCTTT
TTTGAAGAGAAAAACATGGAACATTTATCAGTGCTGCTCTAAAGATGCTA
CATTGTAATTACCACGCGACAAGATTGTTTCGACACCCAATTTTATtctc
ttaattttttcaatttatttatgcCAAGAATAATGATCAGGCTTTTTCCC
TTTTCTTCAATTTACCATTCAAATTATTTATTTGAAAGGACCTGCTTTTT
TGGTGCCTTTCAACTTCTTACATCATATCAATCAAGTATTTTGTTTCAAG
TAAGCTTTTGAATCCTTGAAAAGCTTTACTGCCATCATTTTTCATCACCG
TTACATGTTCATATAATACATCTGGCAGGTTTATCGGTGCCTTTGCCAAA
GTTGTGTCTTTTGAAAGGGTTGACTGACTGGACAAAGTTACCAATCCATT
TTCTAGTATTTACTCCTCTAAAATTTTCATACCGGATCTAATTTTGTTAA
ATTGTGTTAAACAGTGTATTAAGTTTGTTAAAAAACTACAATCCTCTCAA
ACTACCTTCTATTAATCTACTCTCTAGTTTTTCCTCTAGTTGGTTTTTCA
TTGTCTGAATCTACGAGCTCGTTGAGCAACACCACCACCATTACTGCATT
TCTTTTCTcggccgccattttgttttgaaagaataaatgaACTAATTATC
GTTCGAATGGTTTTTTCAAGAAGTCCCACAAATTTCGCTTCATCCAACAC
AAGTTTTTccatccaacatttcatccaacattggaaaatcatgttggatg
aaatgttggactggtttgccCCGGCCATAAGCGGTTTGGTAGCCGATAAT
AACAGTGGTTTGGTAGCCATTGTTCAAGTTTTTGATTGCATTGAAATTTC
TTGCAAAACATcagattttcattatttttttattctttaagactttttta
ttaTTGCAAGCCTGATGATCTGGGACAAAGCGTGCAGGAGCAGAATAAGA
AGTAGATGATAATGAACGTAAGTAGAAATTCTGACGAATGTTGGCACTCC
TACGCGGTAGCGCCGGGCTATAAAAAAAGGCACTGTGACGTCTCgaagaa
aaattaccaaaattttgtgtaaaataagaataaaagtaaaagataTTTGT
GACTCTTGCGAGTGAGTTCGTGAGTTCTGTCTCAGATATGTTCAATTCTC
TGTTCCAAATCGATCGAGAGCCGCGAATACATAACAATAAGGGCCTCAAC
AAACTGAAGGATATATGTACGGCGCAATGGATTCATGGAGGAGTACATCA
CGTTTTTCGGCAAGCATCAAAGCCAAACCTTTATAGAATAATTGGCATTC
TCTCCCCATGCCTCCGTTCGTTGAAAACACCAGTGGGGTAAAGGTACCAT
ACTCAACATTGTTGACGTTCTCTCGTTGTAGTGTCTCTTTTTCTCGGATT
CGTTCCGTTGAAAGCACTTACTGAGTGCCTATATCGAAAAATGCTCTTTG
GCCAGGTGTCCAGAACCCAGTTGCACTTATGTCGAGTCGAGCTCCTTCAG
ACGTGTTTGCAGTCTTGTATGCGAATTCCTCACCTTTGATGTAATTAAGG
CTATATTAATTTGCGTTTTTTAAACTTGGTTCAACTTGTCCTGACCTTTT
GTTCTAGATTTCAGTTCTTAGCAGAGTTGGAAGGACTAAGGACCTAATTC
ATCGTCCTTAATAACCTCGAAAGCTCTGAACCATTTTAAACATTCAAAAG
ATTCCTGCAGTCCAGGTTTTTGCCTTGCTAATACAATTCCTAATATGTAC
CTTTAGAATtatctttatttcttttattcgaTGAAATGGACATGAACATT
TTTTTGTGTCCATTATATCAACCATGTCGGCTACAAATGATTGAGACCAA
ATTACCTTTGTGCcagctttttttctttttttctttaccAGTCTTTTTGC
AACCTTCTGCTGGTTTTGTATTGGAACCGTCAACCTCCCTCTATCTCTCA
CGAATATCTCTTGGATCTGTGACAATAGGTGGCAGTATACATTCTTCATC
AgaattgtttatttatttattttttattttatttcacatTTATTTGGC Run BLAST on NCBI protein sequence of TCONS_00047506-protein >TCONS_00047506-protein ID=TCONS_00047506-protein|Name=TCONS_00047506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MLYSMLPQSLKIALLAEFVLFPFGILLHALAVFVIHRTNEDAVFTEIQKI
YLINLSLVEVLLSLTQMISKSFNFFSEMSGSSFEFIFELLHASFFSVWYM
LIMVLISFDRFLVVYLNLRYPSLWTPKKAKIVVTLLPFLSLVITMVANFV
IKNNHLMNDRSNTLTIYRMFPFIDMTCALIFFSAYGYLLHRLLYYRKFAV
RCQVIRVDVLNHTSQMTNRSHSTVQNSTSGTSSDSASSTRPLKVNFFYPA
LLVISFILFWMVPNWIHYLYYKDDQKIPVSFHWAVDLCYPIAFILDAFIY
IFSSKKIRNSLRRFLKRTRGYNTNS Run BLAST on NCBI transcript from alignment at scaffold_13:186656..190203 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047506 ID=TCONS_00047506|Name=TCONS_00047506|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_13:186656..190203 (Clytia hemisphaerica)
GCCAAATAAatgtgaaataaaataaaaaataaataaataaacaattcTGA
TGAAGAATGTATACTGCCACCTATTGTCACAGATCCAAGAGATATTCGTG
AGAGATAGAGGGAGGTTGACGGTTCCAATACAAAACCAGCAGAAGGTTGC
AAAAAGACTggtaaagaaaaaaagaaaaaaagctgGCACAAAGGTAATTT
GGTCTCAATCATTTGTAGCCGACATGGTTGATATAATGGACACAAAAAAA
TGTTCATGTCCATTTCAtcgaataaaagaaataaagataATTCTAAAGGT
ACATATTAGGAATTGTATTAGCAAGGCAAAAACCTGGACTGCAGGAATCT
TTTGAATGTTTAAAATGGTTCAGAGCTTTCGAGGTTATTAAGGACGATGA
ATTAGGTCCTTAGTCCTTCCAACTCTGCTAAGAACTGAAATCTAGAACAA
AAGGTCAGGACAAGTTGAACCAAGTTTAAAAAACGCAAATTAATATAGCC
TTAATTACATCAAAGGTGAGGAATTCGCATACAAGACTGCAAACACGTCT
GAAGGAGCTCGACTCGACATAAGTGCAACTGGGTTCTGGACACCTGGCCA
AAGAGCATTTTTCGATATAGGCACTCAGTAAGTGCTTTCAACGGAACGAA
TCCGAGAAAAAGAGACACTACAACGAGAGAACGTCAACAATGTTGAGTAT
GGTACCTTTACCCCACTGGTGTTTTCAACGAACGGAGGCATGGGGAGAGA
ATGCCAATTATTCTATAAAGGTTTGGCTTTGATGCTTGCCGAAAAACGTG
ATGTACTCCTCCATGAATCCATTGCGCCGTACATATATCCTTCAGTTTGT
TGAGGCCCTTATTGTTATGTATTCGCGGCTCTCGATCGATTTGGAACAGA
GAATTGAACATATCTGAGACAGAACTCACGAACTCACTCGCAAGAGTCAC
AAAtatcttttacttttattcttattttacacaaaattttggtaattttt
cttcGAGACGTCACAGTGCCTTTTTTTATAGCCCGGCGCTACCGCGTAGG
AGTGCCAACATTCGTCAGAATTTCTACTTACGTTCATTATCATCTACTTC
TTATTCTGCTCCTGCACGCTTTGTCCCAGATCATCAGGCTTGCAAtaata
aaaaagtcttaaagaataaaaaaataatgaaaatctgATGTTTTGCAAGA
AATTTCAATGCAATCAAAAACTTGAACAATGGCTACCAAACCACTGTTAT
TATCGGCTACCAAACCGCTTATGGCCGGggcaaaccagtccaacatttca
tccaacatgattttccaatgttggatgaaatgttggatggAAAAACTTGT
GTTGGATGAAGCGAAATTTGTGGGACTTCTTGAAAAAACCATTCGAACGA
TAATTAGTtcatttattctttcaaaacaaaatggcggccgAGAAAAGAAA
TGCAGTAATGGTGGTGGTGTTGCTCAACGAGCTCGTAGATTCAGACAATG
AAAAACCAACTAGAGGAAAAACTAGAGAGTAGATTAATAGAAGGTAGTTT
GAGAGGATTGTAGTTTTTTAACAAACTTAATACACTGTTTAACACAATTT
AACAAAATTAGATCCGGTATGAAAATTTTAGAGGAGTAAATACTAGAAAA
TGGATTGGTAACTTTGTCCAGTCAGTCAACCCTTTCAAAAGACACAACTT
TGGCAAAGGCACCGATAAACCTGCCAGATGTATTATATGAACATGTAACG
GTGATGAAAAATGATGGCAGTAAAGCTTTTCAAGGATTCAAAAGCTTACT
TGAAACAAAATACTTGATTGATATGATGTAAGAAGTTGAAAGGCACCAAA
AAAGCAGGTCCTTTCAAATAAATAATTTGAATGGTAAATTGAAGAAAAGG
GAAAAAGCCTGATCATTATTCTTGgcataaataaattgaaaaaattaaga
gaATAAAATTGGGTGTCGAAACAATCTTGTCGCGTGGTAATTACAATGTA
GCATCTTTAGAGCAGCACTGATAAATGTTCCATGTTTTTCTCTTCAAAAA
AGGTCGTGATTTTCTAGGAATTAGTATTATAGCCTCTCGTTCGTTTCAAG
AAACGGCGCAACGAGTTTCTGATCTTCTTCGATGAGAATATGTAAATAAA
CGCATCAAGTATAAAAGCTATAGGGTAGCACAAATCAACTGCCCAGTGGA
ATGAAACCGGGATTTTCTGATCGTCTTTATAGTAGAGATAATGAATCCAA
TTCGGAACCATCCAGAATAATATAAAGGAGATAACAAGCAATGCTGGGTA
GAAGAAATTCACTTTCAACGGTCTTGTTGAGGAAGCCGAGTCACTCGAGG
TTCCACTAGTTGAATTCTGAACGGTTGAGTGGCTTCGATTTGTCATTTGA
GAGGTGTGATTAAGGACATCGACACGAATAACTTGACATCTGACAGCAAA
TTTTCTGTAATAAAGAAGCCGATGCAGTAAGTAACCGTACGCTGAGAAAA
ATATAAGGGCACATGTCATATCAATGAAAGGAAACATTCGATAAATAGTC
AATGTATTCGAGCGATCGTTCATAAGATGATTGTTCTTGATGACGAAATT
TGCAACCATGGTAATGACTAACGACAAAAATGGTAGCAGAGTAACAACAA
TCTTGGCTTTCTTTGGAGTCCATAAAGATGGATATCTGAGGTTTAAATAA
ACGACTAGAAATCGGTCGAACGATATCAGAACCATGATGAGCATGTACCA
TACGGAGAAGAAACTTGCGTGAAGTAATTCGAATATAAACTCAAAACTCG
AGCCAGACATTTCGCTGAAGAAATTGAAGGATTTACTTATCATTTGGGTC
AACGATAATAATACTTCAACCAAACTCAGATTGATCAAGTAGATTTTTTG
TATCTCTGTAAACACAGCGTCTTCATTAGTTCGGTGAATAACAAAGACGG
CCAAAGCATGTAGTAAAATGCCGAACGGGAATAAAACAAATTCAGCTAAA
AGAGCGATTTTCAAGCTTTGTGGTAACATACTGTAaagcattttcttgaa
attgtgATAAGTGACATAAGTGAtaagaagaaagtgaaaacttattctca
ataggtcaaaataaagcaaaacaTCTTCAAAATCCAATTAGTTCAAAACT
TGACGAATCAGTCGGCTAACAGTTGAGAAGCGTTTTGATATATACCATCT
GTTAAACACGTGATCTTCTTacagaaattgaaattctttatTAGACTCAT
TCACTTGAAAACATCAAAGCCAACGTTCCAGAGTGAGGATGAAAAATTGA
TTGCCTACATTGAAACTCAAGTCTCTcttattttcaaacaaacgagaata
GCCTTTGCTACTAAATATTTGGTTTTTCATTTAGAGCTTCATTTTAGAAC
TATTTATTTATTGGACATGAAAGGGGAATAAAGAACGGCTAATGAAGATG
CATGAAAGGATTTGTATCTCATATTACTACATGTCTCTTTTTCACCAAAA
GTTATTCAGTGACAGTCTCTGATTCCAAAcaagaattttttaaacttt Coding sequence (CDS) from alignment at scaffold_13:186656..190203 >TCONS_00047506 ID=TCONS_00047506|Name=TCONS_00047506|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_13:186656..190203 (Clytia hemisphaerica)
CTAGGAATTAGTATTATAGCCTCTCGTTCGTTTCAAGAAACGGCGCAACG
AGTTTCTGATCTTCTTCGATGAGAATATGTAAATAAACGCATCAAGTATA
AAAGCTATAGGGTAGCACAAATCAACTGCCCAGTGGAATGAAACCGGGAT
TTTCTGATCGTCTTTATAGTAGAGATAATGAATCCAATTCGGAACCATCC
AGAATAATATAAAGGAGATAACAAGCAATGCTGGGTAGAAGAAATTCACT
TTCAACGGTCTTGTTGAGGAAGCCGAGTCACTCGAGGTTCCACTAGTTGA
ATTCTGAACGGTTGAGTGGCTTCGATTTGTCATTTGAGAGGTGTGATTAA
GGACATCGACACGAATAACTTGACATCTGACAGCAAATTTTCTGTAATAA
AGAAGCCGATGCAGTAAGTAACCGTACGCTGAGAAAAATATAAGGGCACA
TGTCATATCAATGAAAGGAAACATTCGATAAATAGTCAATGTATTCGAGC
GATCGTTCATAAGATGATTGTTCTTGATGACGAAATTTGCAACCATGGTA
ATGACTAACGACAAAAATGGTAGCAGAGTAACAACAATCTTGGCTTTCTT
TGGAGTCCATAAAGATGGATATCTGAGGTTTAAATAAACGACTAGAAATC
GGTCGAACGATATCAGAACCATGATGAGCATGTACCATACGGAGAAGAAA
CTTGCGTGAAGTAATTCGAATATAAACTCAAAACTCGAGCCAGACATTTC
GCTGAAGAAATTGAAGGATTTACTTATCATTTGGGTCAACGATAATAATA
CTTCAACCAAACTCAGATTGATCAAGTAGATTTTTTGTATCTCTGTAAAC
ACAGCGTCTTCATTAGTTCGGTGAATAACAAAGACGGCCAAAGCATGTAG
TAAAATGCCGAACGGGAATAAAACAAATTCAGCTAAAAGAGCGATTTTCA
AGCTTTGTGGTAACATACTGTAaagcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047506-exon-scaffold_13-1491911889:186656..190203 | TCONS_00047506-exon-scaffold_13-1491911889:186656..190203 | Clytia hemisphaerica | exon |
| TCONS_00047506-exon-scaffold_13-1510915933:186656..190203 | TCONS_00047506-exon-scaffold_13-1510915933:186656..190203 | Clytia hemisphaerica | exon |
| TCONS_00047506-exon-scaffold_13-1575043694:186656..190203 | TCONS_00047506-exon-scaffold_13-1575043694:186656..190203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:186656..190203 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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