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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047631 ID=TCONS_00047631|Name=TCONS_00047631|organism=Clytia hemisphaerica|type=transcript|length=1976bpRun BLAST on NCBI transcript from alignment at scaffold_133:186260..210807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047631 ID=TCONS_00047631|Name=TCONS_00047631|organism=Clytia hemisphaerica|type=transcript|length=24548bp|location=Sequence derived from alignment at scaffold_133:186260..210807+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047631 vs. Swiss-Prot (Human)
Match: RBPS2 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.109e-32 Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 1
Query: 187 INKEVRTLFVSGLPMDTKPREIYLMFRGFKGYQSSLLKLTGKEGKKATPVAFVTFETREQAETTKSELQGVRFDPELATTIRIEFAKANTKVSNPVLKPATATSMVLPGIPSPTFPANAFDLAAAGLFAHADPTNW 594
+ +EVRTLFVSGLP+D KPRE+YL+FR FKGY+ SL+KLT ++ PV FV F++R AE K+ L G+RFDPE T+R+EFAKANTK++ L S V P + + + +DL A L A P W
Sbjct: 26 LEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQ-----PVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPSNVHPALGAHFIARDPYDLMGAALIP-ASPEAW 155 The following BLAST results are available for this feature:
BLAST of TCONS_00047631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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