TCONS_00047691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047691
Unique NameTCONS_00047691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047691 ID=TCONS_00047691|Name=TCONS_00047691|organism=Clytia hemisphaerica|type=transcript|length=304bp
CTAAAAAATAGTCATACGTACCTTCACTGGTGGCGATTGGGTCTTTCCAA
GGCACCAAACCCGTAGGAATTAATCTACAAGCAGATTCTGATATTGATAT
TCTACCTCCAGATCAACGGAACTGGTCATCGTTCTTTCTAAGAAGAAATT
CATCTCTTTGGAGTAGGTCGCTTTTGCTTTCGTTTTAAACAAAAAGCAAC
GCGGTTttgatccaggcttttaggctaaagtaggagttttacgctcgaaa
cgaaggaagatatgaggaAACTGGACGTAGCTtaagttttgaatgttttg
gctg
Run BLAST on NCBI

transcript from alignment at scaffold_133:218410..218713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047691 ID=TCONS_00047691|Name=TCONS_00047691|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_133:218410..218713 (Clytia hemisphaerica)
cagccaaaacattcaaaacttaAGCTACGTCCAGTTtcctcatatcttcc
ttcgtttcgagcgtaaaactcctactttagcctaaaagcctggatcaaAA
CCGCGTTGCTTTTTGTTTAAAACGAAAGCAAAAGCGACCTACTCCAAAGA
GATGAATTTCTTCTTAGAAAGAACGATGACCAGTTCCGTTGATCTGGAGG
TAGAATATCAATATCAGAATCTGCTTGTAGATTAATTCCTACGGGTTTGG
TGCCTTGGAAAGACCCAATCGCCACCAGTGAAGGTACGTATGACTATTTT
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030370XLOC_030370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047691-exon-scaffold_133-1491911889:218410..218713TCONS_00047691-exon-scaffold_133-1491911889:218410..218713Clytia hemisphaericaexon
TCONS_00047691-exon-scaffold_133-1510915933:218410..218713TCONS_00047691-exon-scaffold_133-1510915933:218410..218713Clytia hemisphaericaexon
TCONS_00047691-exon-scaffold_133-1575043694:218410..218713TCONS_00047691-exon-scaffold_133-1575043694:218410..218713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:218410..218713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.373121	0	0.426774	0	1.0122	0.812459	0.494005	0.905511	1.25769	1.18369	0.756042	0.500735	0.496302	2.31936	0.85384	0.909477	2.801	0.290362	0	0	0.726013	0.52789	0.427813	0.391734	0.400603	0.360061	0	0	2.50532	0.421938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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