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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047750 ID=TCONS_00047750|Name=TCONS_00047750|organism=Clytia hemisphaerica|type=transcript|length=1111bp
GCAACGCATCACAAAAGATGACACTCTTCTCGACGCTCATTAAGAAAAAA
ACCTTCCGTGATTGATTTAATTGTGTACGCCGTGTATAAAAGAGACATGA
GTAATTGACAACTGATCAGTATTCGAGTGCAGCTCCAACTGATCACTACT
CTTCTAACAAAAATAAACTCCTGCTCGAATAACACAGGCTAAAACAGAAA
AATACATCAATATTTTTCAACCTCACAAATATTTCGAAAGAATTCACACA
ATCATGGCTACCTTATTGAGATGTTTATTTGCTCTTTGTGTTTTGGTCTC
GTTAAGTTATGGACGACCCAGTAACAACGCACCGCTTTCATGTACACAAC
AATGCTTCGACAGAATGGACCTTTGCGGCCCCATGGACTTAACATCATTG
GAAACATATTTCGATAAATGTTTCAAAGACTCGAAAAAATGCCGAGACCA
ATGCCGTAAAGCTGGACAACAACCTTCGTTGAAAGCAGCAAAGACATTCG
ATAAATTCGAAAAAATCCAACAAGCGTACAACAGTTTCAGACTCCGCGTT
TTGAAGATCCGAATGAGTAGTTACTCAAATTAAATTGACGTGAATACCAA
TTTGGTTACAGAGTGAACTGGAGTATGCTTTTCGTGTAAGATACTGTGCG
TGGTTTAAAATTGTGAGAAAAAATGGTTCAATTACTTATCGCGATTTTGT
AAACTCACTAAAACACGATAGCCCACACACAAACACGGAGATGGAAGGga
tttttatgttgttttttgttgttttttgttgttaaaaaatGGATTAAGAC
AATAAGCTATACTTATGACATTAAATATAGTCTTGGTCATGCAAGCTCGT
GCAAAAgactttgaagatttttgctaatttaattttgattattttaacaG
AATTTATACATAAGAAAGTTATAGGTAATTTATATTGTAAAACATAGTAG
TGATGTTTAATTTAtactgaaagttttttttttcttttgtcatcttTTAG
TTTTGGTAGTGACCGTAGTATTTTGTACATACATAAAATTTAGACTTACT
GTAAATGGAAAATTTAACGAAAATTTATttgagaatgagaaaaatatcga
ctatccgaaag Run BLAST on NCBI transcript from alignment at scaffold_136:42175..43600+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047750 ID=TCONS_00047750|Name=TCONS_00047750|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at scaffold_136:42175..43600+ (Clytia hemisphaerica)
GCAACGCATCACAAAAGATGACACTCTTCTCGACGCTCATTAAGAAAAAA
ACCTTCCGTGATTGATTTAATTGTGTACGCCGTGTATAAAAGAGACATGA
GTAATTGACAACTGATCAGTATTCGAGTGCAGCTCCAACTGATCACTACT
CTTCTAACAAAAATAAACTCCTGCTCGAATAACACAGGCTAAAACAGAAA
AATACATCAATGTAAGTAGCATTTATCTGTTTCTTTAGCCTCGGatcaca
tttttttgtttacttttcttGATGAATGGTTCTCCAAGTTATGTGATTAC
TCTCTTAGACTGTTCTGTCGTTTTGAAGTTGACATCTCAACGAGTTGACG
TATACAATGCTAATGTGTTTTCTCTTGTGGTTTTGCTGCGATTTTTGGAT
GTATTATTTCTCATCATTTCTCTCAGAACTTTGTTTACTTTGCTTACATA
TCTGTGGGATATGAATACATTATCTGAAGGTCTCGCTACTGTTTTATTTT
ATCGTAAACGTTTATTTCCTTTATAGATTTTTCAACCTCACAAATATTTC
GAAAGAATTCACACAATCATGGCTACCTTATTGAGATGTTTATTTGCTCT
TTGTGTTTTGGTCTCGTTAAGTTATGGACGACCCAGTAACAACGCACCGC
TTTCATGTACACAACAATGCTTCGACAGAATGGACCTTTGCGGCCCCATG
GACTTAACATCATTGGAAACATATTTCGATAAATGTTTCAAAGACTCGAA
AAAATGCCGAGACCAATGCCGTAAAGCTGGACAACAACCTTCGTTGAAAG
CAGCAAAGACATTCGATAAATTCGAAAAAATCCAACAAGCGTACAACAGT
TTCAGACTCCGCGTTTTGAAGATCCGAATGAGTAGTTACTCAAATTAAAT
TGACGTGAATACCAATTTGGTTACAGAGTGAACTGGAGTATGCTTTTCGT
GTAAGATACTGTGCGTGGTTTAAAATTGTGAGAAAAAATGGTTCAATTAC
TTATCGCGATTTTGTAAACTCACTAAAACACGATAGCCCACACACAAACA
CGGAGATGGAAGGgatttttatgttgttttttgttgttttttgttgttaa
aaaatGGATTAAGACAATAAGCTATACTTATGACATTAAATATAGTCTTG
GTCATGCAAGCTCGTGCAAAAgactttgaagatttttgctaatttaattt
tgattattttaacaGAATTTATACATAAGAAAGTTATAGGTAATTTATAT
TGTAAAACATAGTAGTGATGTTTAATTTAtactgaaagttttttttttct
tttgtcatcttTTAGTTTTGGTAGTGACCGTAGTATTTTGTACATACATA
AAATTTAGACTTACTGTAAATGGAAAATTTAACGAAAATTTATttgagaa
tgagaaaaatatcgactatccgaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047750-exon-scaffold_136-1491911889:42175..42385 | TCONS_00047750-exon-scaffold_136-1491911889:42175..42385 | Clytia hemisphaerica | exon |
| TCONS_00047750-exon-scaffold_136-1510915933:42175..42385 | TCONS_00047750-exon-scaffold_136-1510915933:42175..42385 | Clytia hemisphaerica | exon |
| TCONS_00047750-exon-scaffold_136-1575043694:42175..42385 | TCONS_00047750-exon-scaffold_136-1575043694:42175..42385 | Clytia hemisphaerica | exon |
| TCONS_00047750-exon-scaffold_136-1491911889:42701..43600 | TCONS_00047750-exon-scaffold_136-1491911889:42701..43600 | Clytia hemisphaerica | exon |
| TCONS_00047750-exon-scaffold_136-1510915933:42701..43600 | TCONS_00047750-exon-scaffold_136-1510915933:42701..43600 | Clytia hemisphaerica | exon |
| TCONS_00047750-exon-scaffold_136-1575043694:42701..43600 | TCONS_00047750-exon-scaffold_136-1575043694:42701..43600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:42175..43600 + |
Blast
The following BLAST results are available for this feature:
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