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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050338 ID=TCONS_00050338|Name=TCONS_00050338|organism=Clytia hemisphaerica|type=transcript|length=618bp
TTCATACATTGACAGATGATCAGCAAACGATCTTGCAATTGCAAGATACC
ATTTATTTTCTGGAAGGAAAACTTTcagaaaaagataaagaaattattCG
TCTAAATATCGACCTTCGTCGCACGATGGACGAGCGTCAGCTATGCCTCC
AGTTCGAAAATTCTGCTCTCAAGAGGAAGGCAGCTGGGCATAACAAAACC
GTCCTCCCTTTGAGGAAAGAAAACAATGAACTGCGGGCGGAAAATGAGTC
TCTCACAAGCACCATTATCGAACACATGGAGAGAGAAGCAAAACGAGGGA
AAGGTAAAGATGCAGCTTCGCAAACTATCGAGCTGCAACCTAACACAACC
TCCAGCGGTTGTCAAACTATTGATCTGCAACCTCAAACAACTTCCAGCGG
TTGTCAAACAAACATGCAACCTAAAACAACCTCCAGCGGTTGTCAAACTA
TTGATCTGCAACCTCAAACAACTTCCAGCGGTTGTCAAACAAACATGCAA
CCTAAAACAACCTCCAGCGGTTGTCAAACAATCCAGCTGCGAGccaaaac
aacctccagtgGTTGTCAAGCAAACATACAACCTAAAACAACCTCCAGCG
GTTGTCAAACAATCCAGC Run BLAST on NCBI protein sequence of TCONS_00050338-protein >TCONS_00050338-protein ID=TCONS_00050338-protein|Name=TCONS_00050338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
HTLTDDQQTILQLQDTIYFLEGKLSEKDKEIIRLNIDLRRTMDERQLCLQ
FENSALKRKAAGHNKTVLPLRKENNELRAENESLTSTIIEHMEREAKRGK
GKDAASQTIELQPNTTSSGCQTIDLQPQTTSSGCQTNMQPKTTSSGCQTI
DLQPQTTSSGCQTNMQPKTTSSGCQTIQLRAKTTSSGCQANIQPKTTSSG
CQTIQ Run BLAST on NCBI transcript from alignment at scaffold_169:140899..142240- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050338 ID=TCONS_00050338|Name=TCONS_00050338|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at scaffold_169:140899..142240- (Clytia hemisphaerica)
TTCATACATTGACAGATGATCAGCAAACGATCTTGCAATTGCAAGATACC
ATTTATTTTCTGGAAGGAAAACTTTCAGAAAAAGATAAAGAAATTATTCG
TCTAAATATCGACCTTCGTCGCACGATGGACGTAAGTTAAACATTCTTAT
CTCGGCATTGTTTAAACATCTTTTTACACATTTTTTGTATTTTAAATGAA
GACAGTAGAGTCACCATACCATAACACCACGCACGAGGAACACTCATGGA
ATTTAGCTATGAAAATTCCACTTATAGGCCTGTGGTATACTAGTGGTCAT
TGACTTTGTTGCTGCACAGGCGACTGAGGTTCGATTCCCACTCGCAGCAG
TTCACATGGCAAGTGAACGAACCTTCACCCTGGTAACTATGCCATGCGAG
GGGAATCAGGTAGTCAGTTCAAGGTGCTGCCAGGGCGCTCATTGAAAGCG
CCTATTCTATAGTTGCGAAAAAGGGCCTAAGAGCCTCCTGCAACTCAACC
AAATAGAAATAGAAAAGGTTTGTAACCTGCCAAGTTAAAATTAAAATTCC
GCTAACCAGCCACCTTAATTCAATTTAATTCAATTTTAATTAAACACAAA
TTGATGAAAATAAGAACATTTGAAGAGCATTTGTAGATGCTTAAAACTCA
AAAAGTTATAAGAACATTCGAAGTCATCGATAATTTGAACATTCTTATAC
GAAAACGTGCACATTGGTGGGTTCATTTCTCATATTCTTATTCATATACA
TCTTTACAACTTNGATAATTTGAACATTCTTATACAAAAACGTGCACCTT
GGTGGGTTCATTGTTCATTTTCTTATTCATATGCATCTTTACAACTACTA
TTTAGGAGCGTCAGCTATGCCTCCAGTTCGAAAATTCTGCTCTCAAGAGG
AAGGCAGCTGGGCATAACAAAACCGTCCTCCCTTTGAGGAAAGAAAACAA
TGAACTGCGGGCGGAAAATGAGTCTCTCACAAGCACCATTATCGAACACA
TGGAGAGAGAAGCAAAACGAGGGAAAGGTAAAGATGCAGCTTCGCAAACT
ATCGAGCTGCAACCTAACACAACCTCCAGCGGTTGTCAAACTATTGATCT
GCAACCTCAAACAACTTCCAGCGGTTGTCAAACAAACATGCAACCTAAAA
CAACCTCCAGCGGTTGTCAAACTATTGATCTGCAACCTCAAACAACTTCC
AGCGGTTGTCAAACAAACATGCAACCTAAAACAACCTCCAGCGGTTGTCA
AACAATCCAGCTGCGAGCCAAAACAACCTCCAGTGGTTGTCAAGCAAACA
TACAACCTAAAACAACCTCCAGCGGTTGTCAAACAATCCAGC Coding sequence (CDS) from alignment at scaffold_169:140899..142240- >TCONS_00050338 ID=TCONS_00050338|Name=TCONS_00050338|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_169:140899..142240- (Clytia hemisphaerica)
GAGCGTCAGCTATGCCTCCAGTTCGAAAATTCTGCTCTCAAGAGGAAGGC
AGCTGGGCATAACAAAACCGTCCTCCCTTTGAGGAAAGAAAACAATGAAC
TGCGGGCGGAAAATGAGTCTCTCACAAGCACCATTATCGAACACATGGAG
AGAGAAGCAAAACGAGGGAAAGGTAAAGATGCAGCTTCGCAAACTATCGA
GCTGCAACCTAACACAACCTCCAGCGGTTGTCAAACTATTGATCTGCAAC
CTCAAACAACTTCCAGCGGTTGTCAAACAAACATGCAACCTAAAACAACC
TCCAGCGGTTGTCAAACTATTGATCTGCAACCTCAAACAACTTCCAGCGG
TTGTCAAACAAACATGCAACCTAAAACAACCTCCAGCGGTTGTCAAACAA
TCCAGCTGCGAGCCAAAACAACCTCCAGTGGTTGTCAAGCAAACATACAA
CCTAAAACAACCTCCAGCGGTTGTCAAACAATCCAGCATACATTGACAGA
TGATCAGCAAACGATCTTGCAATTGCAAGATACCATTTATTTTCTGGAAG
GAAAACTTTCAGAAAAAGATAAAGAAATTATTCGTCTAAATATCGACCTT
CGTCGCACGATGGACGAGCGTCAGCTATGCCTCCAGTTCGAAAATTCTGC
TCTCAAGAGGAAGGCAGCTGGGCATAACAAAACCGTCCTCCCTTTGAGGA
AAGAAAACAATGAACTGCGGGCGGAAAATGAGTCTCTCACAAGCACCATT
ATCGAACACATGGAGAGAGAAGCAAAACGAGGGAAAGGTAAAGATGCAGC
TTCGCAAACTATCGAGCTGCAACCTAACACAACCTCCAGCGGTTGTCAAA
CTATTGATCTGCAACCTCAAACAACTTCCAGCGGTTGTCAAACAAACATG
CAACCTAAAACAACCTCCAGCGGTTGTCAAACTATTGATCTGCAACCTCA
AACAACTTCCAGCGGTTGTCAAACAAACATGCAACCTAAAACAACCTCCA
GCGGTTGTCAAACAATCCAGCTGCGAGCCAAAACAACCTCCAGTGGTTGT
CAAGCAAACATACAACCTAAAACAACCTCCAGCGGTTGTCAAACAATCCA
GCATACATTGACAGATGATCAGCAAACGATCTTGCAATTGCAAGATACCA
TTTATTTTCTGGAAGGAAAACTTTCAGAAAAAGATAAAGAAATTATTCGT
CTAAATATCGACCTTCGTCGCACGATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050338-exon-scaffold_169-1575043694:142110..142240 | TCONS_00050338-exon-scaffold_169-1575043694:142110..142240 | Clytia hemisphaerica | exon |
| TCONS_00050338-exon-scaffold_169-1575043694:140899..141385 | TCONS_00050338-exon-scaffold_169-1575043694:140899..141385 | Clytia hemisphaerica | exon |
| TCONS_00050338-exon-scaffold_169-1510915933:142110..142240 | TCONS_00050338-exon-scaffold_169-1510915933:142110..142240 | Clytia hemisphaerica | exon |
| TCONS_00050338-exon-scaffold_169-1510915933:140899..141385 | TCONS_00050338-exon-scaffold_169-1510915933:140899..141385 | Clytia hemisphaerica | exon |
| TCONS_00050338-exon-scaffold_169-1491911889:142110..142240 | TCONS_00050338-exon-scaffold_169-1491911889:142110..142240 | Clytia hemisphaerica | exon |
| TCONS_00050338-exon-scaffold_169-1491911889:140899..141385 | TCONS_00050338-exon-scaffold_169-1491911889:140899..141385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:140899..142240 - |
Blast
The following BLAST results are available for this feature:
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