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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047908 ID=TCONS_00047908|Name=TCONS_00047908|organism=Clytia hemisphaerica|type=transcript|length=6327bpRun BLAST on NCBI protein sequence of TCONS_00047908-protein >TCONS_00047908-protein ID=TCONS_00047908-protein|Name=TCONS_00047908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=898bp NFRHSRHSNMNRINYLKRCYRLNIKRSYQSQGVTHGVLRSRLEKTTKQKDRun BLAST on NCBI transcript from alignment at scaffold_139:136827..155034- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047908 ID=TCONS_00047908|Name=TCONS_00047908|organism=Clytia hemisphaerica|type=transcript|length=18208bp|location=Sequence derived from alignment at scaffold_139:136827..155034- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_139:136827..155034- >TCONS_00047908 ID=TCONS_00047908|Name=TCONS_00047908|organism=Clytia hemisphaerica|type=CDS|length=62031bp|location=Sequence derived from alignment at scaffold_139:136827..155034- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047908 vs. Swiss-Prot (Human)
Match: DHTK1 (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=1 SV=2) HSP 1 Score: 880.937 bits (2275), Expect = 0.000e+0 Identity = 433/803 (53.92%), Postives = 572/803 (71.23%), Query Frame = 2
Query: 299 HLKNTYCQNVAFDLEHLNDEDEKAWLYHQIENSLFE-LTKEKQKEICAHLLKSQVFENFLAKRFPTLKRYSGEGAESMLAMFEELFHISSKSGTNEVMISIPHRGRLALLTGMLNYPTKALFSKLKGNPEFHSSFRFIGDVSSHLTSSTDLNYNDKN-IHVTMVPNPSHLEASHPVIMGKARSRFLTKQQAYYXXXXXXXXXXXXXXXSIQVHGDAAMAGQGIVMETFALASLPHFEVGGSVHLVVNNQLGFTTPHERASTAGHSSDIAKMISAPIIHVNGDSPEDVAKVTKLAVDYRNKFKKDVVINMLCFRRWGHNELDDPTFTNPAMYDVIHQRESVPDLYKKKLVQDGXXXXXXXXXXXXXXXALLDEQLKDADRQVEPAWKPFEDNWKGIQQASHQSASTWDTGCDIDLLKFVGARSTCFPDQFNIHQHLEKTFCEARMKKIESGENIDWATAEALAIGSLLMQGHHVRISGQDVGRGTFSHRHSMLVDQKNNELYIPLNHMSEQQSGCLEVVNSLLSEEAVLAYEYGMSIENPKHLVIWEAQFGDFFNGAQIIIDTYIANAEAKWLLQSGLVMLLPHGMDGAGPDHSSSKIERFLQMSDSKEDGVDSDDVNMQIVNPTTAAQYFHLLRRQQIRNFRKPLIVASPKLILRMSAASSTLSDLVPGTHFKPVIGDLSPGMDKIDTVVFCSGKHYYELAKQRTK--QSKQNVAIIRLESLSPFPAEELKEEVKKYKNAQNFIWSQEEHRNQGAWSFVSPRFQNILNVKLSYNGRPVLCASAIGVNKWHAQEVDDLTKSMFT 2695
+L YC ++ + L +DEK W + E E T E++K + +L+SQ F++FLA +F T+KRY GEGAESM+ F EL +S+ SG +V+I +PHRGRL LLTG+L +P + +F K++G EF +F GDV SHLTSS DL + + +HVTM+PNPSHLEA +PV +GK R R ++Q Y+ +N + + +QVHGDA+ GQGIV ETF L++LPHF +GGSVHL+VNNQLG+TTP ER ++ + SDI K++ IIHVNGDSPE+V + T+LA +Y+ +F+KDV+I++LC+R+WGHNELD+P +TNP MY +I R+S+PD Y + L+ G++T+ E+ I+S YYA L++ L + PA + +W+G+ Q Q +TW TG +DLL+FVG +S P + +H HL KT ++RM+K+ G +DWATAEALA+GSLL QG +VR+SGQDVGRGTFS RH+++V Q+ ++ YIPLNHM Q G LEV NS LSEEAVL +EYGMSIE+PK L +WEAQFGDFFNGAQII DT+I+ EAKWLLQSG+V+LLPHG DGAGPDHSS +IERFLQM DS E+GVD D VNM +V+PTT AQYFHLLRRQ +RNFRKPLIVASPK++LR+ AA STL ++ PGT F PVIGD S K+ T+VFCSGKH+Y L KQR K + AIIR+E L PFP + L++E+ KYK+ ++ IWSQEE +N G WSFVSPRF+ L KL GRP L A+G+ H + +D+ F
Sbjct: 121 YLNQIYCGQISIETSQLQSQDEKDWFAKRFEELQKETFTTEERKHLSKLMLESQEFDHFLATKFSTVKRYGGEGAESMMGFFHELLKMSAYSGITDVIIGMPHRGRLNLLTGLLQFPPELMFRKMRGLSEFPENFSATGDVLSHLTSSVDLYFGAHHPLHVTMLPNPSHLEAVNPVAVGKTRGRQQSRQDGDYSPDNSAQPGDRVI--CLQVHGDASFCGQGIVPETFTLSNLPHFRIGGSVHLIVNNQLGYTTPAERGRSSLYCSDIGKLVGCAIIHVNGDSPEEVVRATRLAFEYQRQFRKDVIIDLLCYRQWGHNELDEPFYTNPIMYKIIRARKSIPDTYAEHLIAGGLMTQEEVSEIKSSYYAKLNDHLNNMAHYRPPALN-LQAHWQGLAQPEAQ-ITTWSTGVPLDLLRFVGMKSVEVPRELQMHSHLLKTHVQSRMEKMMDGIKLDWATAEALALGSLLAQGFNVRLSGQDVGRGTFSQRHAIVVCQETDDTYIPLNHMDPNQKGFLEVSNSPLSEEAVLGFEYGMSIESPKLLPLWEAQFGDFFNGAQIIFDTFISGGEAKWLLQSGIVILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDGDTVNMFVVHPTTPAQYFHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEMAPGTTFNPVIGDSSVDPKKVKTLVFCSGKHFYSLVKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQEEPQNMGPWSFVSPRFEKQLACKLRLVGRPPLPVPAVGIGTVHLHQHEDILAKTFA 919 The following BLAST results are available for this feature:
BLAST of TCONS_00047908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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