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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047911 ID=TCONS_00047911|Name=TCONS_00047911|organism=Clytia hemisphaerica|type=transcript|length=2548bpRun BLAST on NCBI protein sequence of TCONS_00047911-protein >TCONS_00047911-protein ID=TCONS_00047911-protein|Name=TCONS_00047911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp MDEQSCPRCKSTSYRNNKLKLLVNVCGHKLCSTCVDVLFTRPSAACPQCNRun BLAST on NCBI transcript from alignment at scaffold_139:161616..178250- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047911 ID=TCONS_00047911|Name=TCONS_00047911|organism=Clytia hemisphaerica|type=transcript|length=16635bp|location=Sequence derived from alignment at scaffold_139:161616..178250- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_139:161616..178250- >TCONS_00047911 ID=TCONS_00047911|Name=TCONS_00047911|organism=Clytia hemisphaerica|type=CDS|length=7320bp|location=Sequence derived from alignment at scaffold_139:161616..178250- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047911 vs. Swiss-Prot (Human)
Match: MAT1 (CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 3.550e-77 Identity = 134/305 (43.93%), Postives = 204/305 (66.89%), Query Frame = 2
Query: 89 MDEQSCPRCKSTSYRNNKLKLLVNVCGHKLCSTCVDVLFTRPSAACPQCNTALRRSDFRVQQFEDALVEKEVDIRRKIVKIFNKREEDFKTLLDYNNYLEDIEVIIFNLANKQNVDETKKKVDAYKKDNEKLIRRNNTKISQEEALMKASIEADLQSAETKRKMLVEEVENAALQKKKEKENLINDLIYANAPAEEVIARHKLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQPI--VEAPLFIYQESTREWFGPSPPEEDALQSKGYLQHIRSASSSERAGGYTESIACQRAIQEAFDCLF 997
MD+Q CPRCK+T YRN LKL+VNVCGH LC +CVD+LF R + CP+C T LR+S+FRVQ FED V+KEV+IR+K++KI+NKREEDF +L +YN++LE++E I+FNL N ++D TKKK++ Y+K+N+ +I++N K+++E+ ++ ++E + Q E +R + +E + + K+K K+ +++L ++ P ++A+HK Q + Q + + K F + H PI +E L+ YQ E +GP PE + L GYL H+R+AS + AGGYT S+AC RA+Q+AF LF
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNKQAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPVKPVTFSTGIKMGQHISLAPIHKLEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305 The following BLAST results are available for this feature:
BLAST of TCONS_00047911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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