TCONS_00047876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047876
Unique NameTCONS_00047876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047876 ID=TCONS_00047876|Name=TCONS_00047876|organism=Clytia hemisphaerica|type=transcript|length=4764bp
TTCATGACGTGTAAATAAGATGGACAAaccgttggcaaaatataagatag
gagaaaaaagaatcaaaaagacaatgaaattatgtttttgtcattttgtc
ttatttatagcgtaattgctgtttttaatgattttttgaaatttcgacat
ggaaaaaaagtcagttttttggaaataactttcgaactactttttcaaat
ttaatgtataatagctcaaaattcaagttagagcatcctctatacaataa
aaaaataatgaacgaaaaatataaatcctggagctcacaatatctcgaca
aacctgtatacttttttttggtgcacccggtatatcaATCAAAACTCTTT
TAAATGATTATTTTAAGCTGCTGCTGCCAAAGGGACTTGCATGGGAGTCA
GTACTACATGTACTACAACTTatgagaaattaaaaatttctgTTCCTGAC
TGCACTTACTTGATGCAACTAtacatttacaaaaatatacaattcTCTGA
AGCACTTATTAAGAGAGCCGAAAATCTTGGCTTCAAAGCTATATTATTGA
CAGTGGATGCACCTACCATTGGAAATCGGATTGCTGacgtgaaaaataaa
tttggtaTTGCGAGCAgtatgaaatttgaaaatttcaagggGCTGCTATC
ACACACAAATGAAAGtctcaaaagttatgttcaaagtAATTTTAAAAGTA
GCCTGAGTTGGGATGATTTGAAATGGCTACGTTCAGTTACTACCCTGCCA
ATTTATTTAAAAGGTATAATGACAAGAGAAGATGCAGGGAAATGTTTAGA
CCATGATGTCCAAGGTATCATTGTTTCTAATCATGGTGGAAGGCAACTCG
ATGGTGTACCAGCTACTATCGATGTACTAACAGAAGTGGTTCAAGCAGTT
GGTCACCGAATACCAGTTTATATTGATGGTGGTATTCGATCAGGAAGTGA
TGTGTTCAAAGCTCTGGCATTGGGTGCGAATGGTGTTTTCATCGGGCGCC
CAGTAGTTTATGGTTTGTCGTATAATGGCAGTAAAGGGGTACAAGAGGTC
TTGCAACATATAACAGATGAGCTGAAATCTATCATGAGGCTAACTGGTTG
TAGAAGGATTAGCGACATCAATTCAACACTGATATACCATGAAAGTCAAT
TTGGAATTTATTCCAAGCCCAAAATTGTGCGGCATTGGAAGCTTACTCCA
GAAGCTCCAATATGTGTTGCAGACATCAAGGAAGGTGCAAAACAATATGG
CTTTCCGATAGATGAAGATATCGAAAGGATTTATGAAGAAGCTTTTCAAA
GGTTACGACTACGACCGCGACGTTTGTGTGGATTACCTCCTTTCGAAAGA
ATGAATGATTTGATGCCGATTTGTTTATTAGACCATGAAGATACACATGA
AATGATATCCATATGTAATGTCAAAGCTTGTTatttggaaatcgaaaatg
aaaagGTTGACAAAGAGAAGCTTGACAAACGAAAATACAACGGATTGGTG
ATAGATATTCGTCACAGTAATTTCAACATGATAAAGAAAGTGAAATCAGA
AGCACGGCTACCAGTCCTAATAACAGGTGTTATGAGCAAAGATGATGCAT
TAGAATGTCTTGATTATCAACCTGATGGCATCATTATAACATGTCAAAAT
ACTATAGATCAATTGACTGCGATTGATGCATTGCCAGAAATTGCAGATGT
GATCAAACGGAGAATACCAATATACCTATACGGTGGCATACGCAAAGGAA
CAGATATCATCAAGGCACTTGCTCGTGGTGCTTCTAAAGTATTTGTCAAG
GAACCATTGTTATGGGCTTATTCTTATAAGGGATCATCGGGTACACTTAA
AGCGCTAGAAATCTTGAACTCTGAATTCCGAAGATCTATGTATCTGGCAG
GctgcaaagattttgatgctATCAAACCATCGCTGGTCGTAAGTGAACAA
TATTCTTTCAACAAAAGTGCAAATTTATCGAAGTACTAATCCAGTGACAT
CAGAACTCCATGATGTCTAATAAAAGGATTCCCCAAAATGATATTATATT
CTTCTGTTTTATAAGGAACTTGCTTTGGTAAACGGTGCtcttgtacacgt
ttttttaataagaatatcagTAATGTACTTTgactgagggtcaagtattc
ttaagaaattgccaaaattccAGGTGAAATATTCGTAACGTATTCTTATt
atttcagagaaaaatttcctttttagaCAACTTAAGTGAGTAGTTCTAAT
ATACGTATACATACACAAAAGAAAGTACACTATATCTCTTTTGttaattt
tcaccctgatattcttatagaagatattcttgtaaaaaaagaagcgtgta
ttCTGATGCATTTAGTGGGACTATGTATTTCATTCATTATGTGAAATTAT
TGATACATTTCTTACACATTTTCTtattcagatttttttaaactcgTTTT
GATTGATTATAAATTGTACAATTTTTTAAACTGTAAATAATGATAGATTT
AGaattaaaatttatgaaatatcAAATAATACTCAACCTCCTAATTTGCG
ATTTATCTTGTTGCTTTATATTGGCCCTATATTATTCTGAAAGTTGCCTT
TACtaaccaaaaaaattgaattgcaGTTACCTGAAAGTCGATTAATAACA
CTTACTCGATTTAGAACGTTGTTTTTACATTCAGGAGCAATTGAAAATGG
AGTACCATACAGTTTTTTACAGAGGAATTGAAATCCACAGGAAATAAACA
TGTGGTGTGAGGAGCAGATCTAGGAGCAAACTAATATTACTAGATTCGAT
CATACTGACTTGTCTTTGGACACATTTGGATATTTGAAGATACCCCATAT
TCGTAGCTCCATTTAAACATCACAAAATAACACTCTCTTCGCTCGCCAGC
TAGAGGTAAAAATATTAGAATAATTAGTTAAACTAGTTCCAAATTATAAT
ACTGCAAAAATAGAAAAAAATTTAAATAATGTTTCTCAGTTATGTATGTT
TTTCAATAAAAGTTGTTAACAGGTTTTACCAAGATATTGTAGAAGGTGTT
TCGGTAATTTTGAACTTAAATATTCATCCGTGAAAGATTTCAAACATGCA
AGTCTAGCTTTGTGCTTCAAACTGGTCCCATCAATAAGTGTTGATTTTCG
AAAATTAAATATACCATGAATATCACTTGATCTATACATTAATTCGCTCA
TATCCTTGTTGAAAACCAGCTTCCAGACCCTGGGACCATCTAAAACACAA
TGGTAGACTTTTTCACCATTCGAGATGTCAAACACGAAGTAGCTTGTACT
CTTGGCTTCGTATCTTTCATTTCTTGTTGTTATGCCAACACATAacaaat
atctttcaaattGCTTCATCAATCTATAGGCtctataatttgtataatta
aCGTTAAATTCGACATTTATGTACAGCTGAGATTCCTTCATTGTAAGAAT
TCCCTTTTCAGTCACCTTTAAAAGTTGAACCATCTTGTGTGAGGTTACAG
AGACAAAAACTGAGCCGTGGACTTGAGTAAAGAATGAGAAAGATTCTGAT
TTCGTCTTGTCATCGCCGACTGTGAATGAGAATAAATGTTTTCCTGAAAA
GTCAAAACAACTTAACAAAGTCAAGTGACAGTCGTAATCGTCGCGAGGTC
CACCATGACCTGTAAAATAGATTCTTTCTGCCTCGAAATCAAGAAATATA
TTTGGATCAACGTGCTCATCATGCCAATCTAAACCTATAGAATGATCTGA
AAATGAAACTTGATGTTCCCCTATCGGTATGGTTATACTTTTATATAAAG
TGATCCCTTGTTCGTCAAATTTGATCAGAGAGACATAAATGTTGTCGTAT
CCGCTCTCTTCATCAAAACAAAGTAGGAGCACATCACCAATAGATTGACT
TTTCTTGATCGCCGAATATAGCAACGTTAAATCTAAAGGAAAATCTACAA
GTTTATTTTGATCGTTCACTTCTCTTGTGCTCACTGATATTTGTTCTGAA
TAAGTTGGACTAGTCACTTCGGGAAATAAATGTCCCACAGTGCCAGAGTA
TAGAGTAGTCTGGAAGCCCTCGATATCCCAAATTGTTTCTATATTAAACC
AGCGGCATGACTCATGGTCATATAATAGGCCATCTTCTTGTGGCGATATC
TCCATACAAAGTGTTACGCTAAGACGCTTAACTTTGCTTTCATTATCATC
ATAATATAGAACAGCTATATCAAAAAAAGGGTAGTCAGACTTTTGTTCGT
CGAGAGCTGTGTAGTATCTATTTGTCGAATCAAAGCCATGGAAACGCCAA
TCAGAATACAAACGCCACCATTTAAGGTTTTTCTCCAGATTAGCTTCCTC
CCTACGCTCAACTTCTTTAAGTATGGAGGGTAGAAAAGATTGTTTTTGAT
TAGCTAGCATGCTTCAAGCAGTCCCTTGTTTTCCCTCCAGTTTCATCAAC
ATCANGATTGTTTTTGATTAGCTAACATGCTTCAAGCAGTCCCTTGTTTT
CCCTCCAGTTTCATCAACATCTTTTCATAGACTTTCGCTCTATCATGAAT
CAgtgtcaaaataatttttcctaatGATCAAGTTAATTGCTGATTTATTA
CACACTTCACTAAAAGTAAATTCTTTATAATGGATATTCAGCTCCATAAC
AAGGTAGATTATTCTATTTTAGACTAGTACACAAGAATCTGAGAAGCTTT
AAAATGCGTTGATAAGCATTCTCGTGTCAAAAAGGGGATGGCGAAAGATT
ACACCATCATATAA
Run BLAST on NCBI

transcript from alignment at scaffold_139:416846..427071+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047876 ID=TCONS_00047876|Name=TCONS_00047876|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at scaffold_139:416846..427071+ (Clytia hemisphaerica)
TTCATGACGTGTAAATAAGATGGACAAaccgttggcaaaatataagatag
gagaaaaaagaatcaaaaagacaatgaaattatgtttttgtcattttgtc
ttatttatagcgtaattgctgtttttaatgattttttgaaatttcgacat
ggaaaaaaagtcagttttttggaaataactttcgaactactttttcaaat
ttaatgtataatagctcaaaattcaagttagagcatcctctatacaataa
aaaaataatgaacgaaaaatataaatcctggagctcacaatatctcgaca
aacctgtatacttttttttggtgcacccggtatatcaATCAAAACTCTTT
TAAATGATTATTTTAAGCTGCTGCTGCCAAAGGGACTTGCATGGGAGTCA
GTACTACATGTACTACAACTTatgagaaattaaaaatttctgTTCCTGAC
TGCACTTACTTGATGCAACTAtacatttacaaaaatatacaattcTCTGA
AGCACTTATTAAGAGAGCCGAAAATCTTGGCTTCAAAGCTATATTATTGA
CAGTGGATGCACCTACCATTGGAAATCGGATTGCTGacgtgaaaaataaa
tttggtaTTGCGAGCAgtatgaaatttgaaaatttcaagggGCTGCTATC
ACACACAAATGAAAGtctcaaaagttatgttcaaagtAATTTTAAAAGTA
GCCTGAGTTGGGATGATTTGAAATGGCTACGTTCAGTTACTACCCTGCCA
ATTTATTTAAAAGGTAAGAGattgatttttatttaaagaaaattaaaaga
caAATTGGTTTTTATTCTTATATATAGTaacagttttcatttttctatct
GTTTTCAGCCGCATTTAATTCTTATGGTCATGGCCTTTTATGCTTCGTCT
CTTTATCACTGCAATGTACTGCAATGtaacattttatatttttcataaat
ttattGTCAGATCCAACTTTAAAACCAATCGCCAAATCTTAAATCATCAT
ATCTCAAATATTCTTTCCGAAACTCTCTGATTTTAGGTATAATGACAAGA
GAAGATGCAGGGAAATGTTTAGACCATGATGTCCAAGGTATCATTGTTTC
TAATCATGGTGGAAGGCAACTCGATGGTGTACCAGCTACTGTAAGAGATT
TTCTCATTCCAGGTCATTCCACGGTttttcccccggggggggggggactt
aggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCGCCATTGCGCCCTCTTAAAGGGATCGAGGCTAATTTCAAAGATA
CCTCTATTGAACTATTTAGAATAAATGTTCAGCTGAATAGTGGTACTAAC
AACACTGTTTCCAGATTttgattcagattttttatttcaactgttatgtt
ttgtttcttcccATATCGTTGAGACATTCGGTTGTAGGCTTAGAACAGCT
GTAGAACAGAACAATACTCTCGACTCTTCTGTATTAGTCTCATTGACATC
CTCTCGTCCTCTCTGTAAAAGCgtcgttttaaagcttatacttgcaaaat
agtcctttcaaacctagacttcatcagttctgattttgaaccttaccgta
ggatcacataagattccgattccTGCTATAACACTCCACTTGCCACTTGA
AAACAGATGATAGTTAGCTCCGActagttgaaaaatcaaaatcaaaaaac
gcaaaaaagaagttatgttttgattatttttataatcggccaacttgttt
cattgaaaaaataaatcaaaacattacttcttttttgcgttttatgattt
gccagcttggattaattcacttttttctgccGGTATGCCCGGGAAAACTA
GCGGAATGGTCCCGGAAAAGCGCCAGTAATGCTAGAGCGggaatcggaat
cttatgtgatcctaCGGTAATCCTTGAAACGGATATCTGAAATTTATCTA
CGTTCATTATTACgtattttgaaactttagcgttctatttgttcttgtac
atctataatattgtatgacctttctagctttgaaacacattttgtggaaG
TAGAGAGNNNTCAGTGTcgaatctgacagggtatagGTTTTTCCCAGTAG
AATCTGACAGGATAggtttttcatcgaatttttcttctgacagggtctat
ttttcatcaaatttcatttctgacaggatcgacttttgaaactccagcgg
cacgtccccgtcggtcgtcaaggtcagtgcccccccttCGGGGTTTTTCC
ACTTATAATGCAGTGTAgtcaatgaaaatttgaatagtaaagggggcGAG
AAAAAGAGCAGGaaacatcgatagttggcaaatCTGGAGGGGGGACTTTA
TCTTAAACTTTATCTCAGAAATCATTTCATTGATGTTTTAAGTCTGCTTT
ACTAagcatgtttgtttacattaacccattttcgttctattttgtttagt
attccttttgcaccAAATAtttacgtttgtgtcaggttgaaattttagat
aaatttaTATGGGTATACggggggaactgatatttttcagaattttctgg
gggaaagcaaaaaaagaggggggagacTAGAAAAAGAGCGGGGAGATTTa
aagaaatcaagaatttggtgggggggacaaaccctggaggacactatgaa
acCATGCAGGTTTAATCCTTTTAGAGTGGTTTCACTCGTTagtaaaaaaa
ggtgtacacactTAAGCAAATGGACTTAAATTCAGCTTAAATAAACTTCA
AAAGACTCAAATCTGACCtaataaaataagattttcgGTTGCCTTATTTC
TTTAGCAGGAGTCTTTTTACAATGTTCTCTTCGTAAATAAGCTAGAACTG
CAGTAGATGTGCATTTCATTAATGCATTACTATAGTGTACTTGACATAAT
TAACAGATCGATGTACTAACAGAAGTGGTTCAAGCAGTTGGTCACCGAAT
ACCAGTTTATATTGATGGTGGTATTCGATCAGGAAGTGATGTGTTCAAAG
CTCTGGCATTGGGTAAGCATCCAATACCGAGACTATAATTTTTGGCCTAA
CAATGATACACTATACATAGATATATGCATTTGAAGTCGAACTATAAAAA
CTGACCATTTCGAAAAGTATCCACCTCCAAGGAGTGAATGggatttgata
tgaaattttaaATACTGGATGATTTGGAAATTGCGGTAGTTTTGTTGGTA
TTGTCTTTTAGTTTTTATCATGAAGATTTCATAAATTCATATCAATGGTC
ACTTTTTATATTCTTTAATGTTGTATAGCCATACATGTCAAAGCCTAATC
TAGACTTTCAGTGATTTGTTGCTTGATCTAATATTTCTAATAATGTTTCT
TTCCTAGGTGCGAATGGTGTTTTCATCGGGCGCCCAGTAGTTTATGGTTT
GTCGTATAATGGCAGTAAAGGGGTACAAGAGGTCTTGCAACATATAACAG
ATGAGCTGAAATCTATCATGAGGCTAACTGGTAAGGATGAGTACTAAGAA
TTTCAATTtatacacccctttctcgcagCCCCGTGAAACTTTTTCCCCAA
CGGGGAtaaaagtttttattgaaatctcaatgggaatagaaattctattg
gtccaaaggttaaaaaatccagtgaggatggcttcggagtgcaattttca
aacattgaatttcgaatcgGGATGAAGTTAAAAtttcccagcgggtctgt
gacaaagGGGTGTATTAATTCATAATTGCATGCAATAGtttgaaaaattg
tttcattTCTTCTACTCAAAGATAGTGTATCTTATCATCATTCAACTTTA
GGTTGTAGAAGGATTAGCGACATCAATTCAACACTGATATACCATGAAAG
TCAATTTGGAATTTATTCCAAGCCCAAAATTGTGCGGTAAGTGGTAACAG
ATATTACAGCTACTAAAAATTTCGAGTATATTAAGTTGCATTtgctaaat
aaaataaattcaaattgaCTCCTAACATAAAAGACATTATCTATGCACGC
CTTTTGGCTCAGAATGTATTTTCAAAACGCTTTATAAGTATTACTTTTTG
GATTCTTGATTTTTCAAGATatatgaattttaaattttaaattgaatTGA
CTTCAGGCATTGGAAGCTTACTCCAGAAGCTCCAATATGTGTTGCAGACA
TCAAGGAAGGTGCAAAACAATATGGCTTTCCGATAGATGAAGATATCGAA
AGGATTTATGAAGAAGCTTTTCAAAGGTTTGAAGAAAATAATTAAACAAA
TCAACAAAGGTTAACTTCAAAAGGTTTCCAAAAGTATCGATAAAGATAAT
ATTTTCGgaattattttgaattcatttaatTGATGTGGATATTTTTGGCT
ATAGTAGAACTAAATCGAAAGCTTCATCGAActtgttctttctttttcaa
caaaGGTTACGACTACGACCGCGACGTTTGTGTGGATTACCTCCTTTCGA
AAGAATGAATGATTTGATGCCGATTTGTTTATTAGACCATGAAGATACAC
ATGAAATGATATCCATATGTAATGTCAAAGGTAATAACCTTACTCGCTTT
TTACTGTACTTTATCCAACACCATATTTATCTACATAGTTGAAAGGTTTC
ACCACAAAATTATTAActcttcaaattaaaaaggtTTTCAATAAAATGGC
TTTATATAATAAAGTAGAGCCTCTTTAGCTCGAACTTCTAACTCAAATgt
atccttaactcgaacaagcttactccataactcgaaagtTCTTtagctcg
aacaaatttgtgtttccgTGCGTGATTGGAGAATACACTGTATTGTTTTA
GAAGCTTGTTatttggaaatcgaaaatgaaaagGTTGACAAAGAGAAGCT
TGACAAACGAAAATACAACGGATTGGTGATAGATATTCGTCACAGTAATT
TCAACATGATAAAGAAAGTGAAATCAGAAGCACGGCTACCAGTCCTAATA
ACAGGTGTTATGAGCAAAGATGATGCATTAGAATGTCTTGATTATCAACC
TGATGGCATCATTATAACATGTCAAAATACTATAGATCAATTGACTGCGG
TATATAAACTTCAAAACTCGATTAGGGCTTATTACCAAAGTATTTATATA
TTTTCTATTTGGTTTCTCTCGAATACCGAATAGTTTGTCGAAATCGTACT
TAGGGAAAATGTCCTCTACTCAACTCGACTGATAACTGGGTCAAAGATGA
GTTTATTCTATTGGAAATTGAGTCTTTGGTATATGTCTTAGTACTATGTA
TTTTGTATTCCACTATCATTTGCTTCAGATTGATGCATTGCCAGAAATTG
CAGATGTGATCAAACGGAGAATACCAATATACCTATACGGTGGCATACGC
AAAGGAACAGATATCATCAAGGCACTTGCTCGTGGTGCTTCTAAAGTATT
TGTCAAGGAACCATTGTTATGGGCTTATTCTTATAAGGTTTGATCCATTT
TCAattactacacgttttttataagagcattcataattttttatgtcttt
ggatgttttttacattttgagTTTAATGCCTAATAATGTTCTTAATGTTt
gtattttaccattttgtgatgattctttccatttttctaggaaattgggt
gttttggagtccgcggaggcttaaaatattcttaacttgttaaTACTTTG
GCCATCGAAGAATTATACTTTTACATTATTGGTATTTTTGTTTTACTGTA
CATGACTATTTCCCCCCTCGTTCTTACTTATTTATACATCATTACAGAGT
CACTCCCTCTTTTCGTTTAAGGGATCATCGGGTACACTTAAAGCGCTAGA
AATCTTGAACTCTGAATTCCGAAGATCTATGTATCTGGCAGGTATAAACT
TTTATTAAAAGCATTTGGCTTCAAACTCGATCTTGTTGGTAAGCTGGGGT
TTAGCACTGTGACTTCTTTTGCCAAAGTGTctgttcaaaattttgattct
ttaATCATTAGATTTATAATTTTGTCTCCTTTAAAGAAGATGAATTGTCT
TGAAGTACCTATCGGCCATTCTTGCTTTGCCCCTCTATACGTCGGCCCAT
AATCCGCCACTGtcatttaaaggaagaaattttggcgggattttaatttg
gcggatggccgaaaaaaaattttcagagggagtttaatttggcgtttgca
ggatatttttggccaaaatcgtTATCAAATGAGCACCAATTTGGGGAATg
cgttaaataaaataaatttcgcgggaatttaactTGGCAGATGGagccaa
aaataaattttagttgGAACTTAATTTGTCGGATTTTGgcgaaattcgcc
aaatccgccatATTTTCttaccgccaaaatttcttcctttaaaggtAATA
ATGCCAATTGAGCCTTAATAAAGCCAAAACCTATGAAAGTGGCTGAATTG
TCAGCTAAATAGTCAAGATAaactgaaattttcattaaatctCTCGAACT
TCGTTGGTAATTTTTTGAAGACTTCATTAAAAACTAGCCTTGTGTTTACC
ACAGGCCAAAAAATAACGCCATTAAGGGTCGGCACAAAAACAGTTGTGTT
GAAGTTTTTATAACATTCTCACATAATTGGTTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatagagatgacgcgtt
ctttagaaaaatataataaaagtttttgtttgaatagttaacgaccaatc
caatgacaaaaattcttgtaaaatgttcaacttgacccCATAAAAAGGCC
CGATAAGGTATCTGAATACTGTATCATTGAAACTTAAAAATATTATACTG
CTATGTTTTCAGGctgcaaagattttgatgctATCAAACCATCGCTGGTC
GTAAGTGAACAATATTCTTTCAACAAAAGTGCAAATTTATCGAAGTACTA
ATCCAGTGACATCAGAACTCCATGATGTCTAATAAAAGGATTCCCCAAAA
TGATATTATATTCTTCTGTTTTATAAGGAACTTGCTTTGGTAAACGGTGC
tcttgtacacgtttttttaataagaatatcagTAATGTACTTTgactgag
ggtcaagtattcttaagaaattgccaaaattccAGGTGAAATATTCGTAA
CGTATTCTTATtatttcagagaaaaatttcctttttagaCAACTTAAGTG
AGTAGTTCTAATATACGTATACATACACAAAAGAAAGTACACTATATCTC
TTTTGttaattttcaccctgatattcttatagaagatattcttgtaaaaa
aagaagcgtgtattCTGATGCATTTAGTGGGACTATGTATTTCATTCATT
ATGTGAAATTATTGATACATTTCTTACACATTTTCTtattcagatttttt
taaactcgTTTTGATTGATTATAAATTGTACAATTTTTTAAACTGTAAAT
AATGATAGATTTAGaattaaaatttatgaaatatcAAATAATACTCAACC
TCCTAATTTGCGATTTATCTTGTTGCTTTATATTGGCCCTATATTATTCT
GAAAGTTGCCTTTACtaaccaaaaaaattgaattgcaGTTACCTGAAAGT
CGATTAATAACACTTACTCGATTTAGAACGTTGTTTTTACATTCAGGAGC
AATTGAAAATGGAGTACCATACAGTTTTTTACAGAGGAATTGAAATCCAC
AGGAAATAAACATGTGGTGTGAGGAGCAGATCTAGGAGCAAACTAATATT
ACTAGATTCGATCATACTGACTTGTCTTTGGACACATTTGGATATTTGAA
GATACCCCATATTCGTAGCTCCATTTAAACATCACAAAATAACACTCTCT
TCGCTCGCCAGCTAGAGGTAAAAATATTAGAATAATTAGTTAAACTAGTT
CCAAATTATAATACTGCAAAAATAGAAAAAAATTTAAATAATGTTTCTCA
GTTATGTATGTTTTTCAATAAAAGTTGTTAACAGGTTTTACCAAGATATT
GTAGAAGGTGTTTCGGTAATTTTGAACTTAAATATTCATCCGTGAAAGAT
TTCAAACATGCAAGTCTAGCTTTGTGCTTCAAACTGGTCCCATCAATAAG
TGTTGATTTTCGAAAATTAAATATACCATGAATATCACTTGATCTATACA
TTAATTCGCTCATATCCTTGTTGAAAACCAGCTTCCAGACCCTGGGACCA
TCTAAAACACAATGGTAGACTTTTTCACCATTCGAGATGTCAAACACGAA
GTAGCTTGTACTCTTGGCTTCGTATCTTTCATTTCTTGTTGTTATGCCAA
CACATAacaaatatctttcaaattGCTTCATCAATCTATAGGCtctataa
tttgtataattaaCGTTAAATTCGACATTTATGTACAGCTGAGATTCCTT
CATTGTAAGAATTCCCTTTTCAGTCACCTTTAAAAGTTGAACCATCTTGT
GTGAGGTTACAGAGACAAAAACTGAGCCGTGGACTTGAGTAAAGAATGAG
AAAGATTCTGATTTCGTCTTGTCATCGCCGACTGTGAATGAGAATAAATG
TTTTCCTGAAAAGTCAAAACAACTTAACAAAGTCAAGTGACAGTCGTAAT
CGTCGCGAGGTCCACCATGACCTGTAAAATAGATTCTTTCTGCCTCGAAA
TCAAGAAATATATTTGGATCAACGTGCTCATCATGCCAATCTAAACCTAT
AGAATGATCTGAAAATGAAACTTGATGTTCCCCTATCGGTATGGTTATAC
TTTTATATAAAGTGATCCCTTGTTCGTCAAATTTGATCAGAGAGACATAA
ATGTTGTCGTATCCGCTCTCTTCATCAAAACAAAGTAGGAGCACATCACC
AATAGATTGACTTTTCTTGATCGCCGAATATAGCAACGTTAAATCTAAAG
GAAAATCTACAAGTTTATTTTGATCGTTCACTTCTCTTGTGCTCACTGAT
ATTTGTTCTGAATAAGTTGGACTAGTCACTTCGGGAAATAAATGTCCCAC
AGTGCCAGAGTATAGAGTAGTCTGGAAGCCCTCGATATCCCAAATTGTTT
CTATATTAAACCAGCGGCATGACTCATGGTCATATAATAGGCCATCTTCT
TGTGGCGATATCTCCATACAAAGTGTTACGCTAAGACGCTTAACTTTGCT
TTCATTATCATCATAATATAGAACAGCTATATCAAAAAAAGGGTAGTCAG
ACTTTTGTTCGTCGAGAGCTGTGTAGTATCTATTTGTCGAATCAAAGCCA
TGGAAACGCCAATCAGAATACAAACGCCACCATTTAAGGTTTTTCTCCAG
ATTAGCTTCCTCCCTACGCTCAACTTCTTTAAGTATGGAGGGTAGAAAAG
ATTGTTTTTGATTAGCTAGCATGCTTCAAGCAGTCCCTTGTTTTCCCTCC
AGTTTCATCAACATCANGATTGTTTTTGATTAGCTAACATGCTTCAAGCA
GTCCCTTGTTTTCCCTCCAGTTTCATCAACATCTTTTCATAGACTTTCGC
TCTATCATGAATCAgtgtcaaaataatttttcctaatGATCAAGTTAATT
GCTGATTTATTACACACTTCACTAAAAGTAAATTCTTTATAATGGATATT
CAGCTCCATAACAAGGTAGATTATTCTATTTTAGACTAGTACACAAGAAT
CTGAGAAGCTTTAAAATGCGTTGATAAGCATTCTCGTGTCAAAAAGGGGA
TGGCGAAAGATTACACCATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030470XLOC_030470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047876-exon-scaffold_139-1491911889:416846..417608TCONS_00047876-exon-scaffold_139-1491911889:416846..417608Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:416846..417608TCONS_00047876-exon-scaffold_139-1510915933:416846..417608Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:416846..417608TCONS_00047876-exon-scaffold_139-1575043694:416846..417608Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:417882..417985TCONS_00047876-exon-scaffold_139-1491911889:417882..417985Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:417882..417985TCONS_00047876-exon-scaffold_139-1510915933:417882..417985Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:417882..417985TCONS_00047876-exon-scaffold_139-1575043694:417882..417985Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:420202..420307TCONS_00047876-exon-scaffold_139-1491911889:420202..420307Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:420202..420307TCONS_00047876-exon-scaffold_139-1510915933:420202..420307Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:420202..420307TCONS_00047876-exon-scaffold_139-1575043694:420202..420307Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:420653..420775TCONS_00047876-exon-scaffold_139-1491911889:420653..420775Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:420653..420775TCONS_00047876-exon-scaffold_139-1510915933:420653..420775Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:420653..420775TCONS_00047876-exon-scaffold_139-1575043694:420653..420775Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:421097..421181TCONS_00047876-exon-scaffold_139-1491911889:421097..421181Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:421097..421181TCONS_00047876-exon-scaffold_139-1510915933:421097..421181Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:421097..421181TCONS_00047876-exon-scaffold_139-1575043694:421097..421181Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:421402..421521TCONS_00047876-exon-scaffold_139-1491911889:421402..421521Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:421402..421521TCONS_00047876-exon-scaffold_139-1510915933:421402..421521Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:421402..421521TCONS_00047876-exon-scaffold_139-1575043694:421402..421521Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:421701..421825TCONS_00047876-exon-scaffold_139-1491911889:421701..421825Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:421701..421825TCONS_00047876-exon-scaffold_139-1510915933:421701..421825Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:421701..421825TCONS_00047876-exon-scaffold_139-1575043694:421701..421825Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:422100..422344TCONS_00047876-exon-scaffold_139-1491911889:422100..422344Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:422100..422344TCONS_00047876-exon-scaffold_139-1510915933:422100..422344Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:422100..422344TCONS_00047876-exon-scaffold_139-1575043694:422100..422344Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:422574..422732TCONS_00047876-exon-scaffold_139-1491911889:422574..422732Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:422574..422732TCONS_00047876-exon-scaffold_139-1510915933:422574..422732Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:422574..422732TCONS_00047876-exon-scaffold_139-1575043694:422574..422732Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:423067..423136TCONS_00047876-exon-scaffold_139-1491911889:423067..423136Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:423067..423136TCONS_00047876-exon-scaffold_139-1510915933:423067..423136Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:423067..423136TCONS_00047876-exon-scaffold_139-1575043694:423067..423136Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1491911889:424208..427071TCONS_00047876-exon-scaffold_139-1491911889:424208..427071Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1510915933:424208..427071TCONS_00047876-exon-scaffold_139-1510915933:424208..427071Clytia hemisphaericaexon
TCONS_00047876-exon-scaffold_139-1575043694:424208..427071TCONS_00047876-exon-scaffold_139-1575043694:424208..427071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:416846..427071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.22236	0	0	1.08523	1.42624	2.87657	2.8353	2.18607	1.58013	3.69977	0.729716	2.51756	1.59069	0.917222	3.40262	1.6801	2.28449	4.67907	1.66043	2.79781	0.476092	1.0827	0.457778	5.21133	5.96058	0.0701625	3.47742e-09	1.1222	1.29124
Blast
[Close]
BLAST of TCONS_00047876 vs. Swiss-Prot (Human)
Match: HAOX1 (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.643e-73
Identity = 119/259 (45.95%), Postives = 183/259 (70.66%), Query Frame = 1 
Query:  382 GTCMGVSXXXXXXYEKLKISVPDCTYLMQLYIYKNIQFSEALIKRAENLGFKAILLTVDAPTIGNRIADVKNKFGIASSMKFENFK-GLLSHTNES-------LKSYVQSNFKSSLSWDDLKWLRSVTTLPIYLKGIMTREDAGKCLDHDVQGIIVSNHGGRQLDGVPATIDVLTEVVQAVGHRIPVYIDGGIRSGSDVFKALALGANGVFIGRPVVYGLSYNGSKGVQEVLQHITDELKSIMRLTGCRRISDINSTLI 1134
            GT M +S+  T++ E++  + P+    +QLYIYK+ + ++ L+++AE +G+KAI +TVD P +GNR+ DV+N+F +   ++ +NF+   LS + E        L +YV      S+SW+D+KWLR +T+LPI  KGI+  +DA + + H + GI+VSNHG RQLDGVPATIDVL E+V+AV  ++ V++DGG+R G+DV KALALGA  VF+GRP+V+GL++ G KGVQ+VL+ + +E +  M L+GC+ +  I+ TL+
Sbjct:  102 GTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360

HSP 2 Score: 111.309 bits (277), Expect = 1.766e-25
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 1 
Query: 1531 IKKVKSEARLPVLITGVMSKDDALECLDYQPDGIIITCQNT--IDQLTA-IDALPEIADVIKRRIPIYLYGGIRKGTDIIKALARGASKVFVKEPLLWAYSYKGSSGTLKALEILNSEFRRSMYLAGCKDFDAIKPSLVVSEQYSFNK 1965
            IK ++    LP++  G++  DDA E + +  +GI+++      +D + A ID LPEI + ++ ++ ++L GG+RKGTD++KALA GA  VFV  P++W  +++G  G    LEIL  EFR +M L+GC++   I  +LV     + +K
Sbjct:  222 IKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLAVSK 369
The following BLAST results are available for this feature:
BLAST of TCONS_00047876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HAOX13.643e-7345.95Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
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