TCONS_00048335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048335
Unique NameTCONS_00048335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048335 ID=TCONS_00048335|Name=TCONS_00048335|organism=Clytia hemisphaerica|type=transcript|length=462bp
CTGTTTGCCAAGAATCttattctatttttttgtaaaaacggAAAGAAAGA
GGCCCACTCGGTTCTACAAAGATTCAACTGTAAGGTAAGATCTTACCTCT
GGTACGAAGGGAATAGAAAGGTCAACTTCGACAGGAACTAAGGTCTTTTT
CTGTGGAATATCACCATGGATCATATCAAAGAGAGGTTTTGAAAATGGTA
ACGCATCCTCAATACTTCGACGAAATTCAGCATTTTGTCCAGCATAAGCT
GCGGTTCCTCCAACAAGGCCACTGATGGTGGTCACTGTTGCACCAATGTA
TAATCCAGAACTTCCACCTGAAGTTCTACAAATTATAAATAAGATTGCTT
GAgttaaaataaccaaattcTTAGTTCGGTACCCAGatagaaaaatttct
tgatacAATTTCAATCATGCATCCATTGAAATGTGGGGAATTAAAAAGGG
AATcagtttata
Run BLAST on NCBI

transcript from alignment at scaffold_142:30916..31445-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048335 ID=TCONS_00048335|Name=TCONS_00048335|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at scaffold_142:30916..31445- (Clytia hemisphaerica)
CTGTTTGCCAAGAATCTTATTCTATTTTTTTGTAAAAACGGAAAGAAAGA
GGCCCACTCGGTTCTACAAAGATTCAACTGTAAGGTAAGATCTTACCTCT
GGTACGAAGGGAATAGAAAGGTCAACTTCGACAGGAACTAAGGTCTTTTT
CTGTGGAATATCACCATGGATCATATCAAAGAGAGGTTTTGAAAATGGTA
ACGCATCCTCAATACTTCGACGAAATTCAGCATTTTGTCCAGCATAAGCT
GCGGTTCCTCCAACAAGGCCACTGATGNAATACTTCGACGAAATTCAGCA
TTTTGTCCAGCATAAGCTGCAGTTCCTCCAACAAGGCCACTGATGGTGGT
CACTGTTGCACCAATGTATAATCCAGAACTTCCACCTGAAGTTCTACAAA
TTATAAATAAGATTGCTTGAGTTAAAATAACCAAATTCTTAGTTCGGTAC
CCAGATAGAAAAATTTCTTGATACAATTTCAATCATGCATCCATTGAAAT
GTGGGGAATTAAAAAGGGAATCAGTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030760XLOC_030760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048335-exon-scaffold_142-1575043694:31179..31445TCONS_00048335-exon-scaffold_142-1575043694:31179..31445Clytia hemisphaericaexon
TCONS_00048335-exon-scaffold_142-1575043694:30916..31110TCONS_00048335-exon-scaffold_142-1575043694:30916..31110Clytia hemisphaericaexon
TCONS_00048335-exon-scaffold_142-1510915933:31179..31445TCONS_00048335-exon-scaffold_142-1510915933:31179..31445Clytia hemisphaericaexon
TCONS_00048335-exon-scaffold_142-1510915933:30916..31110TCONS_00048335-exon-scaffold_142-1510915933:30916..31110Clytia hemisphaericaexon
TCONS_00048335-exon-scaffold_142-1491911889:31179..31445TCONS_00048335-exon-scaffold_142-1491911889:31179..31445Clytia hemisphaericaexon
TCONS_00048335-exon-scaffold_142-1491911889:30916..31110TCONS_00048335-exon-scaffold_142-1491911889:30916..31110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:30916..31445 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.733665	0.52266	0	0.293646	0	0.324946	0	0.348264	0	0.916909	2.35942	0.243436	0.466031	0	0	0	0.225418	0	0	0	0.675741	0.483675	0	0	0	0.576153	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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