TCONS_00048536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048536
Unique NameTCONS_00048536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048536 ID=TCONS_00048536|Name=TCONS_00048536|organism=Clytia hemisphaerica|type=transcript|length=1656bp
cttagcaaaataaaaaatgtcatcaCTTTCAAGAACCACAAATTCAGATT
CAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTG
GAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAG
CAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGATG
CTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAGA
ATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAGG
AAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGAG
GTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGTA
TCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGCG
AGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCGG
TCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTCTCAAGAATTTA
GACGACACAAAATTTAAATCACATGAGCTGGGAACCTCTCTCAGTTACAC
AACCACATCCATCTCATTGATGTTGGGATAATAAAACATAAACCAGACAG
GATACAAAGGAGAAAATTTCCACAGGATCATTCCCTAAGACCTACAAGGA
GCAAGCCAAATAAACAAACCACAACCCAGATGGTCATAAAAGGAAAACCC
CTTGTCCCTCCATGAGCAAATCTGTAAAAGGCACACACCATGTGAAAagc
cagaaaaaaggaaaaccttAATGCTAGATGTGAGGTCAACTATCAATCCA
AGGAAATCCCAGAAGGCAAAAAAGAAAACCCTTAATCAAAAAGGAGCAAA
TACTTCCAAAAACCGAAAGGATTTAGCTGTAAATAAGGAAGACCTATTCC
AAAAACATCAGGAGTTGGATACTGTACATAAATAAATAGGATTAGTTTAA
GATAAATCCACAGGAGGATAAAGCCATATTTCATTTCTTGaacGAAACTT
CATACATTCGCATAAAACAAGACAAATCACGATCTTCAAAATCTCGAACT
AGAAGCAGATCTCCAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACG
CTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCA
AAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAA
AGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAG
CAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAA
AACATGCAAATAGCTGTCTATcatatgtttaaaaaaagcgAAACTTCATA
TTTCTAGGATTTTTTTATCaggaaactttttttaaaccaaATTGTAAAGC
ACTTACATgaactttttttttgcatttacttgtaacaaaaatttactgct
ttttatttaagttttcatttttatcattgtaatattttgctttttactgt
ggtaattttttttatattatgctACTATAGCTAGTAGTTTTTAAGATTAC
TTTGTGACTAGATGGAATTAGACTTTGGCAtatgtataaaaatttgaaat
acaaaC
Run BLAST on NCBI

transcript from alignment at scaffold_143:84471..89235-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048536 ID=TCONS_00048536|Name=TCONS_00048536|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_143:84471..89235- (Clytia hemisphaerica)
CTTAGCAAAATAAAAAATGTCATCACTTTCAAGAACCACAAATTCAGATT
CAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTG
GAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAG
CAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAAG
TATATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTAC
CTCAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTGTGCAATCTGT
TTTTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATAT
ACTGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGAT
TAATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTAA
ATAATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTGA
AGATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAAA
AACTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAAC
ATTTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTTT
ATTCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTG
ACGGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCA
TCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGG
AAGCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATC
GTATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAA
GATCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGA
TGGCACTGCGGTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTC
TCAAGAATTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACAT
TGATTGTATCAGCTCATTTTCTTTTAGGTTCTTACATTAGTTTCCATTCC
ATTCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCATT
TAATTTACTTACCTTTTANCTAGGGGCTAAAAAATCTGAAAATTTTCTGA
CCCTCGGCCCCAACCATGGTGGGGCCTACAGGTGTCACTGTATACCAAAT
TACTTTAGGTGTACAAACTTTCGCGAGCAGAAACTTTCGCAATTTTCGCG
AATTTTGGCCCTTTTCGCGAAAGTAAATGTATTCAAAAATTCTAGGAAGG
ACCATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGATAA
TTTGTAAATCTTCAAACTTTGACTATAAGACTAATAAGTCAAAGGACAAA
TGTTTTAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCATTTTTGCAT
GTGAAAATTCTCTATTCTACGTCTTGATTCGCGAAAGTTTATGCTCGCGA
AATATATTTTCATTCAATTCGCGAAAGTAAATGTCGTGAATTTCGCGATT
TTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTCGAATCTTATGCAGAA
CGACAGTACAACATAAAGCAAAAAGTGGAAACTGATGGCTCACGTATTCA
AAATTGAATGTCTTTTGTGTTGTGATGCTTTTAAAGTGTGCTGATTATCT
CATTGTTCAAATTGTTATCTTAGCAAAATAAAAAATGTCGTCACTTTCAA
GAACCACAAATTCAGATTCAAGAATCTATGTTGGTAATTTACCACAATTT
GTGCGTCAAAGAGACTTGGAGGACCATTTTGATCGATATGGTAAGGTGAG
GGGTATTGATATACACAGCAGATTTGATCCCGCTTTCGCCTTCATTGAAT
TTGAAGATTCTCGGTAAGTATATTGCTCTCTCAAGGCTTACAAGAAATAC
TTGCATTATTTCATTTACCTCAATGTGCATTTTTTCCATGAGCTTTCGCT
TTGGTTTTTGCAATCTGTTTTTTAAACTACTTTCATGCAATACATTGGGC
TAATTATTACATGGATATACTGGGATATAGGCTTACATAGCATCAAGCTG
CCTGTCATTAAAGAAGATTAATTGTGACATAAAGAAGCTCTATTTGCATA
GAAAATCTAGGGGATTAAATAATATTGGCTGGGTAGTTCAACTCAATGAG
GACACTATACTTTGTTGAAGATGTTACCCTTTTCGAAGGAATATAACAAC
CTTATTGCAAAGCTCAAAAACTGATCATCTTTTATTTCAAAATTGAGATG
CTCTTTTTCTTAGAAAACATTTGGAATTTATCCTTTTTTGCTAAATTTAT
TTATTCTGAATATTTTTTATTCAGGGATGCTGATGATGCAGTATATGGAG
AAGATGGCAAAAGGTTTGACGGAAACAGAATAAAAGTTCAATTTCCAAGA
GGAACTCCAAGAGATTCATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGG
TCGAGGTCCACCTGGAGGAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCAC
CCTCTAGAACTGATCATCGTATCATTGTATCTGGATTACCAAAATCAGGC
AGTTGGCAAGATTTAAAAGATCACATGCGAGAAGCTGGTGAAGTTGTTTA
TGCTGATGTTTATAAGGATGGCACTGCGGTCTGTGAATTCAAAAGTTCTA
GCGATATGAAATGGGCTCTCAAGAACTTAGACGACACAAAATTTAAATCA
CATGAGGTATTTACACATTGATTGTATCAGCTCATTTTCTTTTTGGTTCT
TACATTAGTTTCCATTCCATTCTCATAAAAGAAGTATTTACTACCTAGGC
TTTAAATTCCTCCTCATTTAATTTACTTACCTTTTATAAACACTTTAGAA
AATCCATTATAGTAAATTCATGTTTATCAAACCAAACCATGTGAAGATGA
TGAACAATATAAATTAGGCTGACATATTCTGTAATAGATGATACAATCAA
GCTAGACTATTATTATTTTCCAAATTAAAACAGAAAACTTTTTTATTTTG
TTACTAGCTGGGAACCTCTCTCAGTTACACAACCACATCCATCTCATTGA
TGTTGGGATAATAAAACATAAACCAGACAGGATACAAAGGAGAAAATTTC
CACAGGATCATTCCCTAAGACCTACAAGGAGCAAGCCAAATAAACAAACC
ACAACCCAGATGGTCATAAAAGGAAAACCCCTTGTCCCTCCATGAGCAAA
TCTGTAAAAGGCACACACCATGTGAAAAGCCAGAAAAAAGGAAAACCTTA
ATGCTAGATGTGAGGTCAACTATCAATCCAAGGAAATCCCAGAAGGCAAA
AAAGAAAACCCTTAATCAAAAAGGAGCAAATACTTCCAAAAACCGAAAGG
ATTTAGCTGTAAATAAGGAAGACCTATTCCAAAAACATCAGGAGTTGGAT
ACTGTACATAAATAAATAGGATTAGTTTAAGATAAATCCACAGGAGGATA
AAGCCATATTTCATTTCTTGGTAAAACTGTTTTATATATTTTTAACATTG
ATTTTTTAAATTTAGAAAATATGATCTTCTTAAGTCTTAAGATTCTATAT
TGATTAAACTCAAATTAAAATCTTCTTTTTTTTAAAACACATAGTTGCTA
TACTACCTTTTTTTAAATCAATGATTTTGAAATTAAAATTCTGTAGTTAA
TTTACTATGAAGAATTTGTAGCCTTTAGGAACTTTTAGCAATTTAACGTT
GTTTATTTCATTTTCAGAACGAAACTTCATACATTCGCATAAAACAAGAC
AAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCAAGAAGGTA
AAAATAATTTAGTAATATAGTGTTTTCAAAGTTTTCAAAGTTGTTTTCTT
CTCATAGACAGCCAAAAAAGGCAAATTCATTTATCGAAAGTCTCACGCTC
AGTCAGCTAATAATAAAATGTCTACATCATTGAAGCTTACAATATAAATT
TGAAAATATTCCTTTTTCTATAAATAGGTTGGGAAATAATTAGTTTATCT
AGCAAGGTCAGTGAAAACTTGTTGGTGTTGACACAATGTCGGTGTTAAAG
TATTAATTAAAAAAGTAAGTAACTTTAAAAAGTTAATCTCTTTTGAAAAT
GTAATAAAGATGATTATTCTTTTTAGAAGCCGCTCACCAAGGAGAAGATC
TAGATCACGCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAA
GCCGTAGCAAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAA
AAAAGCAAAAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCG
CAGTCGCAGCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAA
CGATTTTAAAACATGCAAATAGCTGTCTATCATATGTTTAAAAAAAGCGA
AACTTCATATTTCTAGGATTTTTTTATCAGGAAACTTTTTTTAAACCAAA
TTGTAAAGCACTTACATGAACTTTTTTTTTGCATTTACTTGTAACAAAAA
TTTACTGCTTTTTATTTAAGTTTTCATTTTTATCATTGTAATATTTTGCT
TTTTACTGTGGTAATTTTTTTTATATTATGCTACTATAGCTAGTAGTTTT
TAAGATTACTTTGTGACTAGATGGAATTAGACTTTGGCATATGTATAAAA
ATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030861XLOC_030861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048536-exon-scaffold_143-1575043694:89041..89235TCONS_00048536-exon-scaffold_143-1575043694:89041..89235Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1575043694:88198..88579TCONS_00048536-exon-scaffold_143-1575043694:88198..88579Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1575043694:85666..86128TCONS_00048536-exon-scaffold_143-1575043694:85666..86128Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1575043694:85339..85418TCONS_00048536-exon-scaffold_143-1575043694:85339..85418Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1575043694:84471..85006TCONS_00048536-exon-scaffold_143-1575043694:84471..85006Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1510915933:89041..89235TCONS_00048536-exon-scaffold_143-1510915933:89041..89235Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1510915933:88198..88579TCONS_00048536-exon-scaffold_143-1510915933:88198..88579Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1510915933:85666..86128TCONS_00048536-exon-scaffold_143-1510915933:85666..86128Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1510915933:85339..85418TCONS_00048536-exon-scaffold_143-1510915933:85339..85418Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1510915933:84471..85006TCONS_00048536-exon-scaffold_143-1510915933:84471..85006Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1491911889:89041..89235TCONS_00048536-exon-scaffold_143-1491911889:89041..89235Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1491911889:88198..88579TCONS_00048536-exon-scaffold_143-1491911889:88198..88579Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1491911889:85666..86128TCONS_00048536-exon-scaffold_143-1491911889:85666..86128Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1491911889:85339..85418TCONS_00048536-exon-scaffold_143-1491911889:85339..85418Clytia hemisphaericaexon
TCONS_00048536-exon-scaffold_143-1491911889:84471..85006TCONS_00048536-exon-scaffold_143-1491911889:84471..85006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:84471..89235 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.58048	3.31097	4.366	4.71505	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.18889	3.00529	0	0	0	0
Blast
[Close]
BLAST of TCONS_00048536 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.550e-47
Identity = 96/180 (53.33%), Postives = 120/180 (66.67%), Query Frame = 2 
Query:   41 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHE 577
            N+D RIYVGNLP  +R +D+ED F +YG +R ID+ +R   P FAF+EFED RDA+DAVYG DG  +DG R++V+FPR       G G G   G      G    R          +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF    DM +A++ LD+TKF+SHE
Sbjct:   13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
The following BLAST results are available for this feature:
BLAST of TCONS_00048536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF11.550e-4753.33Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
back to top