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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048728 ID=TCONS_00048728|Name=TCONS_00048728|organism=Clytia hemisphaerica|type=transcript|length=1859bp
ATCTTTTCGTAACATTCTTTCAGTTTGCAAGTTGCTTGGTTGTCATTGAG
TTGACCACATAGGAATTGTCGCTGTACCACGGCTTCTTGAGGTTGATCCG
GTGGCCGAGGTGGTGGTCAAACTGGACGTGTCCGCACTTTTTTAAGCTTA
TACTTGCGGCGCTGTTGTAAAGTTGCGTTTGTTTGGGTGGTTGTCAACTG
TTGGTCTTTCAATTTATTGCGCACGTCTATCAttgtgaattttaattttt
gttgtaACTCCTCTCTCTACCTTCTCCCCGAGACTGTGGAGAAGTTCAGC
CCGTTTCTTTCGGCGATGGCGATTCCTCTGGGTGTTTTTCGACACTGTTC
TTTCCTCGTTATCAGACGAAGCCGACAGACTAAGTTCACGTGAATCCATT
GTGTTCTTATTTGAATACTTGTACTGAAACTATAAGAATACATTAAGAAT
ATTTAAGATTTGTGTAATCTTTGACACTTAGAGTTTCAGGCTGACCATCC
CTATGAACCTTATCATGTGAACCCGAGATCGAGATCGGTGAGACCGCTCC
CGAATCCGGCGCTCCCGATACGATCTCTCCCTCGGCGTTCATCTGTCATC
TCGCCTGTCACGATCACCGTCTTGCCTGTCACGTCCACCGTCTTGCCAAA
CTTAATACAAAACGTTGAACGCAAATTCAGTAAGTAATATACAATAACTG
CTTCAAAGAAATGACATCAATTATCCAATTCCGCCGTCCTCGTCGATTTG
TTTACGACTTACATCTCGACATTCTTTTGTGATTCATTATAACCAAAAAT
AGAAGAAGATTAAAAAGATTTCTTGTTTCTCAGCTCCAaatttcaaatgt
caaaaaaaaatttccaaaaactttttttgtttatttattttaactGATTC
AGTCCAATCTCCGTAAGCTAAAAACTGCCTTAGATACTGAGCGATTTCGA
CACCCGTTGTATCATTGCGTCCCCACTTTTCTTTCTTCCCAACCTGGACA
TCGTGATTCATTGCACTTCGTTGAGATTCGCAACTATTAGTGATTAATTT
TTGCGTTCACCTGATGATGGaactttgatttgaaatttctaacaTGGTCA
GAAACGTTGAGTACCGATCCTTGTTTTCTCCTGCTGTCATGACTTAAAAA
AACGTCATTGCTGTACTCAATGCAAGAAAGTTGAGTGAAAAAGAGATGAT
TGTAAGGTAGGGTTGGTAAAAAAGTTGATGGGGCGGTAAATAAACTATAA
GAATCAGTATAACTTAGTTAAGGCCAGTGATGCAAAGACTTTAAAGGAAT
TTGGTCGTCCAGTAACCAATAAAACGATACAAGGGAAGGGAAGAGCTGCC
TAAGACCACTGATAGAGTAATCTCTTGTTATGCAGGCATGGATGGATATG
TGGACGATAGAAAGAACCAGTAGTTGTGATATCCTTTAGAGAagcaaaac
aaaggaaattttctaaCTGGAATCAGCCTGcttgagaaattttttcgagA
ATTCTCCATAACATACCCTCTCTTCTTTTTGAGGGTGGTGTGGAGATGTT
ATCTCTTCAACATTTCAGAGCacgattttgcattttttgtttGGTTAAAT
CAAATTAAAGTTGGATTCTTCTTAGTTCTTGCCAGGTAATGGATGAAAGA
AAGTATCAAAGAGACCACAATTTACTCCTTCTGTCTTCTGTTGGACAGAA
ATAGATCCGATAGTCAGCTAAGATGCAGGGGTTTTCAAAAGTGAGCAGAT
TTGATGTCTGATGTGCAAAGTCATacagacttttttataagcaaaggCAG
AcacaaagcatccaggcatagcatATGCTtgttatatgcttatgaattgT
TACCCAGAC Run BLAST on NCBI transcript from alignment at scaffold_146:127551..129804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048728 ID=TCONS_00048728|Name=TCONS_00048728|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at scaffold_146:127551..129804+ (Clytia hemisphaerica)
ATCTTTTCGTAACATTCTTTCAGTTTGCAAGTTGCTTGGTTGTCATTGAG
TTGACCACATATNAAACAATAAAGATCCCTCAATTTTATAAGCCTTGGTA
GGAAAATGCTTCATTTCTACTTAATCCCTTCTATTTCTCCTGTCCTCAGT
CACAATCTGATAGTTCAAAAATCGCCTGATGAGTTTCATTATCTAATGCA
CGACAAAATAGATGTAGACCTCGAATTGTTCAATTTGCCAGAGTTTTAGT
TTTCGATTCAGAGCGTCAACATGCTGCTTGCTCTTTGAGTTCGTGCGGGG
CTTTTGAAGAAAAAGGGCTGTCGTGACATGGAAATCATACATTAGCCTTT
GATTAACCGAGTGGTTTCTTTGATGTAGTTCTTTCTCCGATACACGATCT
TTTCATAACATTCTTTCAGTTTGCAAGTTGCTTGGTTGTCATTGAGTGAC
CACATAGGAATTGTCGCTGTACCACGGCTTCTTGAGGTTGATCCGGTGGC
CGAGGTGGTGGTCAAACTGGACGTGTCCGCACTTTTTTAAGCTTATACTT
GCGGCGCTGTTGTAAAGTTGCGTTTGTTTGGGTGGTTGTCAACTGTTGGT
CTTTCAATTTATTGCGCACGTCTATCAttgtgaattttaatttttgttgt
aACTCCTCTCTCTACCTTCTCCCCGAGACTGTGGAGAAGTTCAGCCCGTT
TCTTTCGGCGATGGCGATTCCTCTGGGTGTTTTTCGACACTGTTCTTTCC
TCGTTATCAGACGAAGCCGACAGACTAAGTTCACGTGAATCCATTGTGTT
CTTATTTGAATACTTGTACTGAAACTATAAGAATACATTAAGAATATTTA
AGATTTGTGTAATCTTTGACACTTAGAGTTTCAGGCTGACCATCCCTATG
AACCTTATCATGTGAACCCGAGATCGAGATCGGTGAGACCGCTCCCGAAT
CCGGCGCTCCCGATACGATCTCTCCCTCGGCGTTCATCTGTCATCTCGCC
TGTCACGATCACCGTCTTGCCTGTCACGTCCACCGTCTTGCCAAACTTAA
TACAAAACGTTGAACGCAAATTCAGTAAGTAATATACAATAACTGCTTCA
AAGAAATGACATCAATTATCCAATTCCGCCGTCCTCGTCGATTTGTTTAC
GACTTACATCTCGACATTCTTTTGTGATTCATTATAACCAAAAATAGAAG
AAGATTAAAAAGATTTCTTGTTTCTCAGCTCCAaatttcaaatgtcaaaa
aaaaatttccaaaaactttttttgtttatttattttaactGATTCAGTCC
AATCTCCGTAAGCTAAAAACTGCCTTAGATACTGAGCGATTTCGACACCC
GTTGTATCATTGCGTCCCCACTTTTCTTTCTTCCCAACCTGGACATCGTG
ATTCATTGCACTTCGTTGAGATTCGCAACTATTAGTGATTAATTTTTGCG
TTCACCTGATGATGGaactttgatttgaaatttctaacaTGGTCAGAAAC
GTTGAGTACCGATCCTTGTTTTCTCCTGCTGTCATGACTTAAAAAAACGT
CATTGCTGTACTCAATGCAAGAAAGTTGAGTGAAAAAGAGATGATTGTAA
GGTAGGGTTGGTAAAAAAGTTGATGGGGCGGTAAATAAACTATAAGAATC
AGTATAACTTAGTTAAGGCCAGTGATGCAAAGACTTTAAAGGAATTTGGT
CGTCCAGTAACCAATAAAACGATACAAGGGAAGGGAAGAGCTGCCTAAGA
CCACTGATAGAGTAATCTCTTGTTATGCAGGCATGGATGGATATGTGGAC
GATAGAAAGAACCAGTAGTTGTGATATCCTTTAGAGAagcaaaacaaagg
aaattttctaaCTGGAATCAGCCTGcttgagaaattttttcgagAATTCT
CCATAACATACCCTCTCTTCTTTTTGAGGGTGGTGTGGAGATGTTATCTC
TTCAACATTTCAGAGCacgattttgcattttttgtttGGTTAAATCAAAT
TAAAGTTGGATTCTTCTTAGTTCTTGCCAGGTAATGGATGAAAGAAAGTA
TCAAAGAGACCACAATTTACTCCTTCTGTCTTCTGTTGGACAGAAATAGA
TCCGATAGTCAGCTAAGATGCAGGGGTTTTCAAAAGTGAGCAGATTTGAT
GTCTGATGTGCAAAGTCATacagacttttttataagcaaaggCAGAcaca
aagcatccaggcatagcatATGCTtgttatatgcttatgaattgTTACCC
AGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048728-exon-scaffold_146-1491911889:127551..127608 | TCONS_00048728-exon-scaffold_146-1491911889:127551..127608 | Clytia hemisphaerica | exon |
| TCONS_00048728-exon-scaffold_146-1510915933:127551..127608 | TCONS_00048728-exon-scaffold_146-1510915933:127551..127608 | Clytia hemisphaerica | exon |
| TCONS_00048728-exon-scaffold_146-1575043694:127551..127608 | TCONS_00048728-exon-scaffold_146-1575043694:127551..127608 | Clytia hemisphaerica | exon |
| TCONS_00048728-exon-scaffold_146-1491911889:128004..129804 | TCONS_00048728-exon-scaffold_146-1491911889:128004..129804 | Clytia hemisphaerica | exon |
| TCONS_00048728-exon-scaffold_146-1510915933:128004..129804 | TCONS_00048728-exon-scaffold_146-1510915933:128004..129804 | Clytia hemisphaerica | exon |
| TCONS_00048728-exon-scaffold_146-1575043694:128004..129804 | TCONS_00048728-exon-scaffold_146-1575043694:128004..129804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:127551..129804 + |
Blast
The following BLAST results are available for this feature:
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