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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048730 ID=TCONS_00048730|Name=TCONS_00048730|organism=Clytia hemisphaerica|type=transcript|length=3460bp
ATTGCTATTCTGTTTATAACATCTGAcatattttgttcttttgttttcgg
GGAAAACCCATTATGCGAGTCATGTGTGACAGATGACATGAGCAGAGTAA
AACCAGATGTCTCTTGTTGTTAATAGAAACGTATTTTTAACCAATGAGAG
ACGGTCATTAGAAAGTATAAGCCAATCAAAATTGTTACAGAATATTATTC
TATTGTTTATTGGTACGAACAAATCATGGAAGAGAAATTTCACGAATTTA
AATGTAGGAGCGATTTTCAAAGGTTCACTTTATGAAAAACTTATGTGAGA
AGGGAGCATCATAGTTTTGTTTAAACTTTTACGTTCTTTTTCGTTGTATA
AGGCTTGGTTTGggtttgattgattttttgaaaaaagaagactatTTATC
ACGAAGAAAACAACACTGTACACAAGATTTTTAACCAGAGAAAAAACTAC
AATTTTTAACTTATTGGTATTTATATTATTTATCGCAACACGTGAATTTT
AACACAGCATGACAACTGTACACCTTATGAACGGACACCATCACCTTTTG
AATGGAAACATGAATGCTATGAATGGACATTTAGCAATGAACGGTTATGC
AAACCATGCTCAAATGGAGCCTCCAAAGCCTGCCGAACTCGTTGAAGTCG
AGCCTTTCGATGAAGACAACGCTACAAATCTTATCATCAATTATCTCCCT
CAGGAAATGACCGAGGAAGAACTTCGAACTTTGTTTTCATCCGTTGGACC
CTTGGAATCATGCAAACTCATTCGTGATAAGGTCACACGTGCTTCCCTCG
GTTACGCATTCGTCAAATATGAACTTCCCAATGACGCCAAAAAAGCCATG
GAATCTCTTCAAGGGATGAAACTAACCAATAAAACTATCAAAGTTTCGAT
CGCGCGGCCATCGTCCAACGAGATCAAGAACGCCAATTTGTACGTCAGTG
GTTTACCTCTCACTTGTAGCGAACAAGAATTACGCGTCCTATTCGCTCGC
TATGGAGCCATCATCACGGCAAAAGTTCTGTACGAAGAAAATGGCCAATC
ACGTGGTGTAGGGTTTGTTCGATTTGATAAACGTATTGATGCGGAAGCAG
CCATTTCCGGCCTCAATAACCGTATTCCTGAGATGAATGGTGCGGTCAAA
CCACTCACAGTGAAGTTCGCTAACCCTCCTTCACAAAAGATTCAACCCTA
CCTCGATATCTTGGCACAAGCTAAAGGGCTGGCTGGATCCGCCCTTCTTA
GACAAGCAGTTGGTCTCTCTCAACTCTCTCCCATGGCAGCTACCTCGACC
GCTGCGGCAGCTTCACTAGGAACCTCTCCGCTCGCTTCACCCCTGTCTCC
TAACTCGTCGATCTTGCGTGGAAACTTAGCTATCAGTCCGTCCAACTCGG
TGACCGCTTTGAATGGCATCCAAACATCTTCATGGTGTGTGTTTGTTTAC
AATCTGCCGTCAGACGCCAATGATCTTACCTTATTCCAGCTCTTCTCCAA
ATACGGAGCGATTTTGTCCACTCGCGTTGTCTACGATGATAACACTAAGA
AATGCAAAGGATTCGGCTTTGTCAATATGGCTCATTACGAAGACGCAACG
ATGTCAATCTTACATTTGAATGGTTACTGTTTGGAGCGTGGAAAGCCTCT
TCAAGTTTCCTTCAAACGCCCAAAATCTCAACAAAATATGCCTGTGGCGT
AAATGGGCACCTGTTGGGTGGATGGTCGGAACGATGGTGAGATTCTGCtt
tttttgtttgcttgcttttccgttgttttttaatttttccagaAGAGAGA
AATTTTGTGTATATATATTTGTGAATGGAAGACTTGGGAATTTTTATTTA
GTTTATATAAAAAGCAGGATAATAAAAGAGGGTCGTTTCGTTACCATAGA
TACAGGGGGAGAGAGAGCAGTGGGTTCTGGTGGGTTAACGGGAggtaaag
aattattttttagaattttcatgttttttgttgttttttttagaaatgtc
ccaggaatttctaaaaaatctaattattgttattataaggaattatatta
taatattttttctgtTAGTTGTTTTACTGTTCATTTGGAAAGCAccaaga
aatttttttcgggattttcaaatttgatcaaattcGGAGGTTTAAAGtat
gagaaattcttttgtgattttactGAATCTTAAACATTACAAATATGCTG
ACTCATCAAAAATTTAGCTTCTTTCTTGGTGTTTTATACttaatttcttg
atttttttgcgatgatgaagaaatgaatttttttgtcttgGTTTGTTTGT
TGGTATAGATAAGAGattaaaaaggatttttaaaCAAAGCGCTGCTGAGC
TGCTGCAACGTTTTTACAACTCGGCAGTCGGCCAGTGTTATTACGATAAG
CATTTACTGTTCATACTTATTATATTGTAATATTATATTATTGTAGTACC
TAGTTCATTTTCCTGACCTCGAAAatagaaaatcaagaaatttcttTCTG
TTTTTATATCTTATATGTGAAGGCTAGATGCCTTTAAAAATGTAAAACCC
AATATTCTTACCCTAAGCCCTGCTTGCAGTGGAATCTCTCAAAAGCGGAC
ATTTTCGGACAGCTCCGGACAAAAACATTAGCTGTTCGCTGGAGAGGGAT
TTCACTGTAATATCATTTTAGGGCGTGGTTATTTAAATTATGAAAAGATA
GTGTATATAATATTGCTATTATCCTATAATACTTTCTCGTAACGAGATAA
TAAACTTTAGaactttgttattttgaaatatttagtaGCTATAAGTTTGT
GTTTTTGTTGCttaaatgaaatgttttttgtgtgtttttatttccaaacg
attttcttttctttttttctttggattttttttcgttCCATTTTCATAtc
gtttttgtttgttttttgaaagatttttaccgCCATTTCATTGGTCCAGA
AATGTTAATAATCCGAGAAATCCAATTCATAAAtgaattcaaattttctt
aaaataattcCAAGTCTTTTGTTCCGTTACAGAAataaattatcaaattt
ttatccaagatttttaaataatattgtTATGTATCTTATTCTTCCTTGAA
GACAGTTTTGATCAGAATTTATTGAGATTTTGAAATCAGCTTTTCTTTTG
GTCTTGAATACATTGTTATtgcgtttttcaaaatttgggatTATTCCTAT
CAGAATTTGAGCCATATCAAAGAATTTCTTTCgttctttgaaaaagaaat
caaaaaatctttctatTTGTCGTTTTCGTTTCGccttaatttttcatcaa
aatattttcatttattttctctCTTAATTAGCAATATTTTgtgttctttc
attttttagtattataatttctttgatttatttttcaatagtaatatttc
ttttgttgtttttcgaatatttacgttttctcaaaattaaaaagataaac
TCAATGAAAC Run BLAST on NCBI protein sequence of TCONS_00048730-protein >TCONS_00048730-protein ID=TCONS_00048730-protein|Name=TCONS_00048730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MTTVHLMNGHHHLLNGNMNAMNGHLAMNGYANHAQMEPPKPAELVEVEPF
DEDNATNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGYA
FVKYELPNDAKKAMESLQGMKLTNKTIKVSIARPSSNEIKNANLYVSGLP
LTCSEQELRVLFARYGAIITAKVLYEENGQSRGVGFVRFDKRIDAEAAIS
GLNNRIPEMNGAVKPLTVKFANPPSQKIQPYLDILAQAKGLAGSALLRQA
VGLSQLSPMAATSTAAAASLGTSPLASPLSPNSSILRGNLAISPSNSVTA
LNGIQTSSWCVFVYNLPSDANDLTLFQLFSKYGAILSTRVVYDDNTKKCK
GFGFVNMAHYEDATMSILHLNGYCLERGKPLQVSFKRPKSQQNMPVA Run BLAST on NCBI transcript from alignment at scaffold_146:135153..142324+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048730 ID=TCONS_00048730|Name=TCONS_00048730|organism=Clytia hemisphaerica|type=transcript|length=7172bp|location=Sequence derived from alignment at scaffold_146:135153..142324+ (Clytia hemisphaerica)
ATTGCTATTCTGTTTATAACATCTGAcatattttgttcttttgttttcgg
GGAAAACCCATTATGCGAGTCATGTGTGACAGATGACATGAGCAGAGTAA
AACCAGATGTCTCTTGTTGTTAATAGAAACGTATTTTTAACCAATGAGAG
ACGGTCATTAGAAAGTATAAGCCAATCAAAATTGTTACAGAATATTATTC
TATTGTTTATTGGTACGAACAAATCATGGAAGAGAAATTTCACGAATTTA
AATGTAGGAGCGATTTTCAAAGGTTCACTTTATGAAAAACTTATGTGAGA
AGGGAGCATCATAGTTTTGTTTAAACTTTTACGTTCTTTTTCGTTGTATA
AGGCTTGGTTTGggtttgattgattttttgaaaaaagaagactatTTATC
ACGAAGAAAACAACACTGTACACAAGATTTTTAACCAGAGAAAAAACTAC
AATTTTTAACTTATTGGTATTTATATTATTTATCGCAACACGTGAATTTT
AACACAGCATGACAACTGTACACCTTATGAACGGACACCATCACCTTTTG
AATGGAAACATGAATGCTATGAATGGACATTTAGCAATGAACGGTTATGC
AAACCATGCTCAAATGGAGCCTCCAAAGCCTGCCGAACTCGTTGAAGTCG
AGCCTTTCGATGAAGACAACGCTACAAATCTTATCATCAATTATCTCCCT
CAGGTATTTTTTCTTCCATTCCATTTTCCGCTAGTTTTTTTGAGTATGTT
TCGATGCTTTTTCAAAGTAGATCTTAACACACAATATTCGGTTTTTCGAG
GCAATATTTTTAAGTCTTTTAACGAGTGAATATCAGTAGTTCTTGGCTCT
TCGTacttaaagtttaattttttatctcttcttTTTCCTTAAGGAAATGA
CCGAGGAAGAACTTCGAACTTTGTTTTCATCCGTTGGACCCTTGGAATCA
TGCAAACTCATTCGTGATAAGGTATAAACCTCCAttctattttgttgttt
ttctgtCTGTTTTGCATGTTTCTCTCTTTACACATGTATTTCgtgttttt
tttggttttgttgaaAATTAATCTGCAAGGTCGACCTTTTCTTATAATCT
AAAGTCTCAAGACAAGACAATTATAACATCGTAGTGATACTATaattctt
tcaaaacaaaaaagcgAGAACTTCTTTAACAAGCGTCACATGGGAAATCC
GCGATTCATTCATAAAAAATCGTAATTTTTCAAGAGTTTCCTTTGAAAAc
ataaagttgtaaaaaaagCTAGAGAAACAGTAAGTTTTGTGTAATTTATG
TCTGTTTGTTTGATCGCTATTAAAAATGCAtcactttaaaaagtttaaag
agacagaaagaaaaagtttcgtCTTGCCGAAAATGTTTGGGCATGCTTTT
TTctctatttgtttttttccGCCATTTTGGGTTCCTGCccacaaaaagat
tcgaaagaagccattgtaatgaaaattcttttcaagatgaaaaaaaattc
tctctcGCGCCATCcgcttttcttttgaaagaattttttttcgtttctat
TCTTTTGAAGGGTAAATTTGATTTACGAGGTTTTGGCTTTtgtctcaatt
tttttctgttttattcaATTCGGTGATGGAATTAATTACACTgacaaatt
ttctttaaaaagaaggaacattaaatttataatttccTCTGACGTAAAGC
CAATAGAGAAAGTGTTTTTTGAAACGTTTCTGTCGCATTTCCTTTAGTGT
CTCCTTCTTTGAGACAATTTGAACTGTTGAttggctgaaaatgatttgcC
AAAAAGGCAATTTCTTTTTATGCCTTACTTGACAAATTAGAAGAATTTTA
CACTTTGGGGTTTCCCTTGGCATCTGGCATGTATTGtccaatttagattt
ttgaaacGCCAAAGTGAGACTAAAAGTACTCTAAATAATAATTCTTTATA
GTTGTCTTTTTTGTCAGCCATTTAGGAAGAAAGGGAAGGCTAAGAGATAC
TCTTCATTTTAATGAGAAAAACCTCATTATTAAAAGCCCACACAGCAAAA
GCAACCTTTGATGCCAAAACACTAGAAACTTTTTGAGGAGAACTTTTTTC
TACATgacagggaaaatttttaatGGCACGATGACTGATTTAGTATATTT
GCTTTTCCATTCAGATTAAACTGAGTGTCaacagtttgttttgattgaac
caaaataaaaactttaagtGAATGAAAGGAAAGAATACCTCACTCAAAAC
AAACCCTTGAGCAATCCCActtcaaaaagtttatttttttaagaagccTA
CATCCAGACAGCTTTTATAAATACAAACTaaaaagaagtttatcaatTAT
TCTCACTTGAGGggatttgaaagttttgacaAGATGATTTCTGATTGGAT
AAAAATTTGATGACTTAATCTGGAAAGGTATTTCTGAAATAAGAAGCAAT
AACAACTTACAGCATACAAtgtttctataagaacaaactatataagaaca
agagGCTTCAATGGCCACAAGATTGGAAACAAAAGTTACTCAATTCGTAA
AAATAAGCATATTGAAAAGTAAATTTTCATGCTtttaactcaaaaagtta
aatacaTTCAGAGGCCTCGAAGATTTtggatgtgcttataaaaatttatt
gtaaagGATGGCGGGTTATAGAGtaatattttaaggcttattCAGGTTAT
TTGAGTGATCACTAAAAAATTTTATTCCAAAGAAGAGATTTTTAACCCAT
CACATTGAAGCTTCTTAAAAACTTCATATTCGCCAGACGTGGTGACATCg
atctttctatttttctttgtaatgtGTTTGAGAATCATAACTTGACACCT
CCATGTCTGTCAGCAAGAAATGCTTGTTGTCAAAAatctaatgatgtttt
tttgtCTTGTGTTACTCTTATCCTTTTTATACGAATTTGTTACAATTTTG
TTCTCCTCTCCGTTTAGAAATGCCAGCTCTAAACACttaatctcaaaatt
ttttgaggATCTTGAAAATACTTtattcgaaaatacaaaataacgATAGa
caattatacattttttgtaagaaaaatctCTGAAGCTTGGGGACGTCctc
aacttttttagttttaagcctcaaaatattcttaattttactCTTTCGTG
AGTGTTTTTGTGCAATATACCATAAAATTGGGTCTTTAAAATCCTCAAAg
ctttcaaatgttcttaacatgttcttaatattttggcgtTAGAAGccttt
tattcttataaattttgttcttataaaaaaggtgcaTCCATAAAAAATGA
TACCACTTTTGACCTTTTTAGTGAAACGACTTTTTAATCTGAGAGTAACG
ATTACTTTATCTCGACTTCTAATCTTTTTTTGCTATGTCACACTTCAAAC
GCTTACTCTTCAAATCGTGTCTTTAAGCTGAGAAAATGTCATCGGGAGCT
AGTGAAAGTCTGAAGGCTTGAGTGAGGCTTTCTTTTAATCCCGATTGTCT
TTActgtgagattttttttctgtgGATAGAAAATGTAAGGGCTCAGAATG
AATTTCTCATACAGTCTTGAGCCTGGTTTAAGATTTGATCTGAAACTTTA
ACAGAATGAACAGTTATTTTCACAACATTCGAGAAGGAATTAACcctaaa
attttcgaaaaatagtaCAATGGAGTCTCTTTAgctcgaacctctacaac
tcgacAATTTGTTCCCCGTGGGTGTTGGAGTTATGGAGACACCACTGAAT
CTTACACAACTTGTTGTTGTAGTATCATTTTCTAATCAcacaaaataaat
tgaaattattcAAAAGATATTTATCTCAATAGTCATGTGTTGttaattgg
tcagtcatttTCGACCACGAGTTCAATTTCTTTTAATTACTGAAACAATT
TGATACCTATTTGCTTTCCTAATGAGTACCTTCCAACCCTCATAATTAAC
agacaaaatttttgttttgatttcataaGCAACTTTTTGATGACAGTGAA
AATGCTAACGACGAGTTTTCATTTTGTCACAGCTTGGCTTTGCTTTCCAT
ATCAAAACATCACAATccctatacacgtttttttacaagaacatccacaa
tctttgaagccttcagatgttcttaaaccttttcagatttaagcctaaaa
atgttcttaacttgttcttaatattttagttaTCGgagcttatgttctta
tatagtttgttcttactatattttatgttttcttatgtttttattCCCTG
TCTCGTTGGATTATTCTGCTAATAACAAATGTAGAAAGGATGTTAGATTA
GAAGGGTCTTTCTTGGTAGCGATAACTCTTTTTACGGTCACAAGCCTGTT
CTATTCTACCTTTCTTTCTATCTTGCCTTTAAATGAGATTTTCATATCAA
GTTCTCGCCATGTTTTTCGGTTTTTACTTTGTTTCGAATTTCCCTCGTGC
AAGACATCGAAAATAATTCCCCATTTGCCCATTCTTTCATCAGGTCACAC
GTGCTTCCCTCGGTTACGCATTCGTCAAATATGAACTTCCCAATGACGCC
AAAAAAGCCATGGAATCTCTTCAAGGGATGAAACTAACCAATAAAACTAT
CAAAGTTTCGATCGCGCGGCCATCGTCCAACGAGATCAAGAACGCCAATT
TGTACGTCAGTGGTTTACCTCTCACTTGTAGCGAACAAGAATTACGCGTC
CTATTCGCTCGCTATGGAGCCATCATCACGGCAAAAGTTCTGTACGAAGA
AAATGGCCAATCACGTGGTGTAGGGTTTGTTCGATTTGATAAACGTATTG
ATGCGGAAGCAGCCATTTCCGGCCTCAATAACCGTATTCCTGAGATGAAT
GGTGCGGTCAAACCACTCACAGTGAAGTTCGCTAACCCTCCTTCACAAAA
GATTCAACCCTACCTCGATATCTTGGCACAAGCTAAAGGGCTGGCTGGAT
CCGCCCTTCTTAGACAAGCAGTTGGTCTCTCTCAACTCTCTCCCATGGCA
GCTACCTCGACCGCTGCGGCAGCTTCACTAGGAACCTCTCCGCTCGCTTC
ACCCCTGTCTCCTAACTCGTCGATCTTGCGTGGAAACTTAGCTATCAGTC
CGTCCAACTCGGTGACCGCTTTGAATGGCATCCAAACATCTTCATGGTGT
GTGTTTGTTTACAATCTGCCGTCAGACGCCAATGATCTTACCTTATTCCA
GCTCTTCTCCAAATACGGAGCGATTTTGTCCACTCGCGTTGTCTACGATG
ATAACACTAAGAAATGCAAAGGATTCGGCTTTGTCAATATGGCTCATTAC
GAAGACGCAACGATGTCAATCTTACATTTGAATGGTTACTGTTTGGAGCG
TGGAAAGCCTCTTCAAGTTTCCTTCAAACGCCCAAAATCTCAACAAAATA
TGCCTGTGGCGTAAATGGGCACCTGTTGGGTGGATGGTCGGAACGATGGT
GAGATTCTGCtttttttgtttgcttgcttttccgttgttttttaattttt
ccagaAGAGAGAAATTTTGTGTATATATATTTGTGAATGGAAGACTTGGG
AATTTTTATTTAGTTTATATAAAAAGCAGGATAATAAAAGAGGGTCGTTT
CGTTACCATAGATACAGGGGGAGAGAGAGCAGTGGGTTCTGGTGGGTTAA
CGGGAggtaaagaattattttttagaattttcatgttttttgttgttttt
tttagaaatgtcccaggaatttctaaaaaatctaattattgttattataa
ggaattatattataatattttttctgtTAGTTGTTTTACTGTTCATTTGG
AAAGCAccaagaaatttttttcgggattttcaaatttgatcaaattcGGA
GGTTTAAAGtatgagaaattcttttgtgattttactGAATCTTAAACATT
ACAAATATGCTGACTCATCAAAAATTTAGCTTCTTTCTTGGTGTTTTATA
Cttaatttcttgatttttttgcgatgatgaagaaatgaatttttttgtct
tgGTTTGTTTGTTGGTATAGATAAGAGattaaaaaggatttttaaaCAAA
GCGCTGCTGAGCTGCTGCAACGTTTTTACAACTCGGCAGTCGGCCAGTGT
TATTACGATAAGCATTTACTGTTCATACTTATTATATTGTAATATTATAT
TATTGTAGTACCTAGTTCATTTTCCTGACCTCGAAAatagaaaatcaaga
aatttcttTCTGTTTTTATATCTTATATGTGAAGGCTAGATGCCTTTAAA
AATGTAAAACCCAATATTCTTACCCTAAGCCCTGCTTGCAGTGGAATCTC
TCAAAAGCGGACATTTTCGGACAGCTCCGGACAAAAACATTAGCTGTTCG
CTGGAGAGGGATTTCACTGTAATATCATTTTAGGGCGTGGTTATTTAAAT
TATGAAAAGATAGTGTATATAATATTGCTATTATCCTATAATACTTTCTC
GTAACGAGATAATAAACTTTAGaactttgttattttgaaatatttagtaG
CTATAAGTTTGTGTTTTTGTTGCttaaatgaaatgttttttgtgtgtttt
tatttccaaacgattttcttttctttttttctttggattttttttcgttC
CATTTTCATAtcgtttttgtttgttttttgaaagatttttaccgCCATTT
CATTGGTCCAGAAATGTTAATAATCCGAGAAATCCAATTCATAAAtgaat
tcaaattttcttaaaataattcCAAGTCTTTTGTTCCGTTACAGAAataa
attatcaaatttttatccaagatttttaaataatattgtTATGTATCTTA
TTCTTCCTTGAAGACAGTTTTGATCAGAATTTATTGAGATTTTGAAATCA
GCTTTTCTTTTGGTCTTGAATACATTGTTATtgcgtttttcaaaatttgg
gatTATTCCTATCAGAATTTGAGCCATATCAAAGAATTTCTTTCgttctt
tgaaaaagaaatcaaaaaatctttctatTTGTCGTTTTCGTTTCGcctta
atttttcatcaaaatattttcatttattttctctCTTAATTAGCAATATT
TTgtgttctttcattttttagtattataatttctttgatttatttttcaa
tagtaatatttcttttgttgtttttcgaatatttacgttttctcaaaatt
aaaaagataaacTCAATGAAAC Coding sequence (CDS) from alignment at scaffold_146:135153..142324+ >TCONS_00048730 ID=TCONS_00048730|Name=TCONS_00048730|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_146:135153..142324+ (Clytia hemisphaerica)
ATGACAACTGTACACCTTATGAACGGACACCATCACCTTTTGAATGGAAA
CATGAATGCTATGAATGGACATTTAGCAATGAACGGTTATGCAAACCATG
CTCAAATGGAGCCTCCAAAGCCTGCCGAACTCGTTGAAGTCGAGCCTTTC
GATGAAGACAACGCTACAAATCTTATCATCAATTATCTCCCTCAGGAAAT
GACCGAGGAAGAACTTCGAACTTTGTTTTCATCCGTTGGACCCTTGGAAT
CATGCAAACTCATTCGTGATAAGGTCACACGTGCTTCCCTCGGTTACGCA
TTCGTCAAATATGAACTTCCCAATGACGCCAAAAAAGCCATGGAATCTCT
TCAAGGGATGAAACTAACCAATAAAACTATCAAAGTTTCGATCGCGCGGC
CATCGTCCAACGAGATCAAGAACGCCAATTTGTACGTCAGTGGTTTACCT
CTCACTTGTAGCGAACAAGAATTACGCGTCCTATTCGCTCGCTATGGAGC
CATCATCACGGCAAAAGTTCTGTACGAAGAAAATGGCCAATCACGTGGTG
TAGGGTTTGTTCGATTTGATAAACGTATTGATGCGGAAGCAGCCATTTCC
GGCCTCAATAACCGTATTCCTGAGATGAATGGTGCGGTCAAACCACTCAC
AGTGAAGTTCGCTAACCCTCCTTCACAAAAGATTCAACCCTACCTCGATA
TCTTGGCACAAGCTAAAGGGCTGGCTGGATCCGCCCTTCTTAGACAAGCA
GTTGGTCTCTCTCAACTCTCTCCCATGGCAGCTACCTCGACCGCTGCGGC
AGCTTCACTAGGAACCTCTCCGCTCGCTTCACCCCTGTCTCCTAACTCGT
CGATCTTGCGTGGAAACTTAGCTATCAGTCCGTCCAACTCGGTGACCGCT
TTGAATGGCATCCAAACATCTTCATGGTGTGTGTTTGTTTACAATCTGCC
GTCAGACGCCAATGATCTTACCTTATTCCAGCTCTTCTCCAAATACGGAG
CGATTTTGTCCACTCGCGTTGTCTACGATGATAACACTAAGAAATGCAAA
GGATTCGGCTTTGTCAATATGGCTCATTACGAAGACGCAACGATGTCAAT
CTTACATTTGAATGGTTACTGTTTGGAGCGTGGAAAGCCTCTTCAAGTTT
CCTTCAAACGCCCAAAATCTCAACAAAATATGCCTGTGGCGTAAATGACA
ACTGTACACCTTATGAACGGACACCATCACCTTTTGAATGGAAACATGAA
TGCTATGAATGGACATTTAGCAATGAACGGTTATGCAAACCATGCTCAAA
TGGAGCCTCCAAAGCCTGCCGAACTCGTTGAAGTCGAGCCTTTCGATGAA
GACAACGCTACAAATCTTATCATCAATTATCTCCCTCAGGAAATGACCGA
GGAAGAACTTCGAACTTTGTTTTCATCCGTTGGACCCTTGGAATCATGCA
AACTCATTCGTGATAAGGTCACACGTGCTTCCCTCGGTTACGCATTCGTC
AAATATGAACTTCCCAATGACGCCAAAAAAGCCATGGAATCTCTTCAAGG
GATGAAACTAACCAATAAAACTATCAAAGTTTCGATCGCGCGGCCATCGT
CCAACGAGATCAAGAACGCCAATTTGTACGTCAGTGGTTTACCTCTCACT
TGTAGCGAACAAGAATTACGCGTCCTATTCGCTCGCTATGGAGCCATCAT
CACGGCAAAAGTTCTGTACGAAGAAAATGGCCAATCACGTGGTGTAGGGT
TTGTTCGATTTGATAAACGTATTGATGCGGAAGCAGCCATTTCCGGCCTC
AATAACCGTATTCCTGAGATGAATGGTGCGGTCAAACCACTCACAGTGAA
GTTCGCTAACCCTCCTTCACAAAAGATTCAACCCTACCTCGATATCTTGG
CACAAGCTAAAGGGCTGGCTGGATCCGCCCTTCTTAGACAAGCAGTTGGT
CTCTCTCAACTCTCTCCCATGGCAGCTACCTCGACCGCTGCGGCAGCTTC
ACTAGGAACCTCTCCGCTCGCTTCACCCCTGTCTCCTAACTCGTCGATCT
TGCGTGGAAACTTAGCTATCAGTCCGTCCAACTCGGTGACCGCTTTGAAT
GGCATCCAAACATCTTCATGGTGTGTGTTTGTTTACAATCTGCCGTCAGA
CGCCAATGATCTTACCTTATTCCAGCTCTTCTCCAAATACGGAGCGATTT
TGTCCACTCGCGTTGTCTACGATGATAACACTAAGAAATGCAAAGGATTC
GGCTTTGTCAATATGGCTCATTACGAAGACGCAACGATGTCAATCTTACA
TTTGAATGGTTACTGTTTGGAGCGTGGAAAGCCTCTTCAAGTTTCCTTCA
AACGCCCAAAATCTCAACAAAATATGCCTGTGGCGTAAATGACAACTGTA
CACCTTATGAACGGACACCATCACCTTTTGAATGGAAACATGAATGCTAT
GAATGGACATTTAGCAATGAACGGTTATGCAAACCATGCTCAAATGGAGC
CTCCAAAGCCTGCCGAACTCGTTGAAGTCGAGCCTTTCGATGAAGACAAC
GCTACAAATCTTATCATCAATTATCTCCCTCAGGAAATGACCGAGGAAGA
ACTTCGAACTTTGTTTTCATCCGTTGGACCCTTGGAATCATGCAAACTCA
TTCGTGATAAGGTCACACGTGCTTCCCTCGGTTACGCATTCGTCAAATAT
GAACTTCCCAATGACGCCAAAAAAGCCATGGAATCTCTTCAAGGGATGAA
ACTAACCAATAAAACTATCAAAGTTTCGATCGCGCGGCCATCGTCCAACG
AGATCAAGAACGCCAATTTGTACGTCAGTGGTTTACCTCTCACTTGTAGC
GAACAAGAATTACGCGTCCTATTCGCTCGCTATGGAGCCATCATCACGGC
AAAAGTTCTGTACGAAGAAAATGGCCAATCACGTGGTGTAGGGTTTGTTC
GATTTGATAAACGTATTGATGCGGAAGCAGCCATTTCCGGCCTCAATAAC
CGTATTCCTGAGATGAATGGTGCGGTCAAACCACTCACAGTGAAGTTCGC
TAACCCTCCTTCACAAAAGATTCAACCCTACCTCGATATCTTGGCACAAG
CTAAAGGGCTGGCTGGATCCGCCCTTCTTAGACAAGCAGTTGGTCTCTCT
CAACTCTCTCCCATGGCAGCTACCTCGACCGCTGCGGCAGCTTCACTAGG
AACCTCTCCGCTCGCTTCACCCCTGTCTCCTAACTCGTCGATCTTGCGTG
GAAACTTAGCTATCAGTCCGTCCAACTCGGTGACCGCTTTGAATGGCATC
CAAACATCTTCATGGTGTGTGTTTGTTTACAATCTGCCGTCAGACGCCAA
TGATCTTACCTTATTCCAGCTCTTCTCCAAATACGGAGCGATTTTGTCCA
CTCGCGTTGTCTACGATGATAACACTAAGAAATGCAAAGGATTCGGCTTT
GTCAATATGGCTCATTACGAAGACGCAACGATGTCAATCTTACATTTGAA
TGGTTACTGTTTGGAGCGTGGAAAGCCTCTTCAAGTTTCCTTCAAACGCC
CAAAATCTCAACAAAATATGCCTGTGGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048730-exon-scaffold_146-1491911889:135153..135855 | TCONS_00048730-exon-scaffold_146-1491911889:135153..135855 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1510915933:135153..135855 | TCONS_00048730-exon-scaffold_146-1510915933:135153..135855 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1575043694:135153..135855 | TCONS_00048730-exon-scaffold_146-1575043694:135153..135855 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1491911889:136046..136123 | TCONS_00048730-exon-scaffold_146-1491911889:136046..136123 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1510915933:136046..136123 | TCONS_00048730-exon-scaffold_146-1510915933:136046..136123 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1575043694:136046..136123 | TCONS_00048730-exon-scaffold_146-1575043694:136046..136123 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1491911889:139646..142324 | TCONS_00048730-exon-scaffold_146-1491911889:139646..142324 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1510915933:139646..142324 | TCONS_00048730-exon-scaffold_146-1510915933:139646..142324 | Clytia hemisphaerica | exon |
| TCONS_00048730-exon-scaffold_146-1575043694:139646..142324 | TCONS_00048730-exon-scaffold_146-1575043694:139646..142324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:135153..142324 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00048730 vs. Swiss-Prot (Human)
Match: ELAV2 (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 296.975 bits (759), Expect = 4.059e-90 Identity = 170/358 (47.49%), Postives = 225/358 (62.85%), Query Frame = 2
Query: 662 EDNATNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGYAFVKYELPNDAKKAMESLQGMKLTNKTIKVSIARPSSNEIKNANLYVSGLPLTCSEQELRVLFARYGAIITAKVLYEE-NGQSRGVGFVRFDKRIDAEAAISGLNNRIPEMNGAVKPLTVKFANPPSQKI-QPYLDILAQAKG------LAGSA-------LLRQAVGLSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGNLAISPSNSVTALN--GIQTSSWCVFVYNLPSDANDLTLFQLFSKYGAILSTRVVYDDNTKKCKGFGFVNMAHYEDATMSILHLNGYCLERGKPLQVSFKRPKSQQ 1684
ED+ TNLI+NYLPQ MT+EEL++LF S+G +ESCKL+RDK+T SLGY FV Y P DA+KA+ +L G++L KTIKVS ARPSS I++ANLYVSGLP T +++EL LF++YG IIT+++L ++ G SRGVGF+RFDKRI+AE AI GLN + P GA +P+TVKFAN PSQK Q L L Q+ LA A LL A G+ + SP + I S+ +N G + WC+FVYNL DA++ L+Q+F +GA+ + +V+ D NT KCKGFGFV M +Y++A M+I LNGY L + LQVSFK K+ +
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP--GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSP-------------------------------MTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-RVLQVSFKTNKTHK 358
The following BLAST results are available for this feature:
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