TCONS_00048799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048799
Unique NameTCONS_00048799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048799 ID=TCONS_00048799|Name=TCONS_00048799|organism=Clytia hemisphaerica|type=transcript|length=451bp
GTCTTTCAAAGGGTCGTTAAAACGTTTAACAAGTGTAAAGATTTTCGAAA
TTGAATCTCTGAAAAGTCGATGTTTGAACTCTAACTCGGACTTaccctcg
caaacctagtatcACCCTCTTCCCACAACCAGGACCATTACTTCGACTGA
AAAGTTTCTAAAACATTGTGAAGAGCAAACGAGCAGATTCAGGAtgtgaa
cttttttttgatgttttcagtTTAAGGGCTAAGCCCCCTAAAGCAATTTA
CATTCCAATATCAAAATCTGAGTTTAAAATATGAGAATCTGGGTTTACAA
GTGTTTAGGCAGGGCCAAATATTATGGTCCGCTGCGCGGCTCTCGTTGAA
TGAGagaaaggtgcccagtagtaaaacttcaaattaattcccTAGAGAGA
ATCAAGTCAAGCAGGGCCAattttggaggttcttgaatCAATCGTTgaca
a
Run BLAST on NCBI

transcript from alignment at scaffold_146:241965..242415

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048799 ID=TCONS_00048799|Name=TCONS_00048799|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at scaffold_146:241965..242415 (Clytia hemisphaerica)
ttgtcAACGATTGattcaagaacctccaaaatTGGCCCTGCTTGACTTGA
TTCTCTCTAgggaattaatttgaagttttactactgggcacctttctCTC
ATTCAACGAGAGCCGCGCAGCGGACCATAATATTTGGCCCTGCCTAAACA
CTTGTAAACCCAGATTCTCATATTTTAAACTCAGATTTTGATATTGGAAT
GTAAATTGCTTTAGGGGGCTTAGCCCTTAAactgaaaacatcaaaaaaaa
gttcacaTCCTGAATCTGCTCGTTTGCTCTTCACAATGTTTTAGAAACTT
TTCAGTCGAAGTAATGGTCCTGGTTGTGGGAAGAGGGTgatactaggttt
gcgagggtAAGTCCGAGTTAGAGTTCAAACATCGACTTTTCAGAGATTCA
ATTTCGAAAATCTTTACACTTGTTAAACGTTTTAACGACCCTTTGAAAGA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031018XLOC_031018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048799-exon-scaffold_146-1491911889:241965..242415TCONS_00048799-exon-scaffold_146-1491911889:241965..242415Clytia hemisphaericaexon
TCONS_00048799-exon-scaffold_146-1510915933:241965..242415TCONS_00048799-exon-scaffold_146-1510915933:241965..242415Clytia hemisphaericaexon
TCONS_00048799-exon-scaffold_146-1575043694:241965..242415TCONS_00048799-exon-scaffold_146-1575043694:241965..242415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:241965..242415 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146602	0.285921	0	0.487188	0	0	0	0	0	0.306046	0	0.0977801	0.491094	0.810042	0.168269	0.357341	0	0	1.24673	1.46769	0.141743	0.207412	0.504274	0.458458	0	0	0.201021	0.214535	0.162717	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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