|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048829 ID=TCONS_00048829|Name=TCONS_00048829|organism=Clytia hemisphaerica|type=transcript|length=1021bp
ctgtgttgcagcgaaaatatatccaattcaattcaattcatccAACTCCA
AGAAGCTCTACAAATACATCAAAACTGATATGTCAACACGCACATCCAAA
ATGGCCATTTTCGAATTGAATAATCTGTAACCGAAATCGATGTCTGTCCC
GATCACCCCTTctaacgaaaaaaaatctggaagACTTGGAACGATTATGA
TCAAAGATTCCTCGACGTTAATTACAACCTAGCCAACTCTCGATCGTCGT
GTTTCTTGTAAACTCTTGGATATGTAGTGACAATAAAAACGGCGTGTGAT
GGGTACAAGCTGGCTAATAACAAACAAcgatcttgctccacatttgattC
TTGAATTGTTGGAAATGTTCAAACATTATTACTTAGAAAACTAAGCCTGA
GCTAATGCACTCTCAAAGGCTGTCAGAATTCTTATgttagtacacgtttt
ttataagaacaatctatataagaacataaggcttcgatggccaaaatgtt
caaaacatgctaagaacattttaagggtttgcggactctaaaacgcCCGA
TTtcgaaatggacaaaaataaactggaaattgggaaaataagaacatatt
aagaatatttttaggctttaaaaaataagattatccaaaggctccaaaat
tttggatgttcttaaaaaaagaacTTGTACAGGTGTTCTTGAAAGTTAAC
CTAAATAACCTAAAATTCAAAAGCATGCAAGCTATTATTTTCTAAGATAT
GAGTGACGTAGCAAAATTCGACTTGAATTCTCTATGCTAAGTGCTAAGGT
ATAGACAATTTTATGATCCCTGACGACAATGACCAAATTTGTTcgtcaaa
tttagaaaatatggGAAGTGTTTGGATATTTTGTTATTTCTAGAACANAA
AATGTTGTAGATATTCAATTTGGTAAGTAAAATGacagttcttttttgtt
ttttcctagCCTTTCTTGACTCTCATCGATTCTTAGGAATCAATtgaaca
aattgaaaatttactcCGAAA Run BLAST on NCBI transcript from alignment at scaffold_147:221742..227680+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048829 ID=TCONS_00048829|Name=TCONS_00048829|organism=Clytia hemisphaerica|type=transcript|length=5939bp|location=Sequence derived from alignment at scaffold_147:221742..227680+ (Clytia hemisphaerica)
ctgtgttgcagcgaaaatatatccaattcaattcaattcatccAACTCCA
AGAAGCTCTACAAATACATCAAAAGTAAGAGCTCTGATAATATCTCTGTT
GCTCCTCTCAAGAAAGGATAACAAAGAGTAACAAAGTAAGAAGTTCACCT
GAGAGCTATCATCCAATATCGCTCACATCAATCTGTTGCAAAGTAATGGA
gcataccgggtgacccacgaaaaagttcataCATTTTTCTTGAGGctgaa
caaatgtcccaaagtgcttggagttttgatttagaaagtagatatcctaa
cttaaaaattgagctatcactttttaaatttgaccaacttgttctctact
tatgagttTTTacagtcaaaattcactttttggaaagtgtaaaaaaacat
GACCATATCTCAAGAGGTCTTAcagtcaactgctctaacttgagactatc
tgacaaaatgtgggacggcaattcagccaccatttcaccgaacctacaaa
gtcatttgatttgagtgctctaacttgggactatctgacaaaatgtggga
cagcaattcagccaccatttcaccgaacctacaaagtcatttgatttgag
ttaatgaacggtgtATTGTGataaatacacaatttctctttcgcaccaag
tacgcttttaaatcgaaatatgaaaaaaatccatagtggaacacacgcga
atgtcttgaacaaagaagaccatattttagtggcaaaacaatggagTGTT
TGATGTCACTCTCGCAGCAAGATacacactcgctatttgttaatcccatc
gagcgataggcggttaggcagcgggCGTTATCTAATCCTCCAATCGttgt
ccggtcattttgaatgaaaacaaaaaagttaaaaagggcacgGTGcgtta
tcagtgaaagttaGTGTGACATGTTattacagaaagtatgattgatcaac
ttggtggagttatcaaaacaaatttgttgtcaaagagatttaacagtaag
tgaaaatacaggccagatatcaacagtcccatgtttcgtcCCAAGTTTGA
GCAGTTGTTGGTATGTCGTTAAGTTTCATATTATTGTCGTCTAAAGTAAA
ACTATGTAAACTCTGTAAAACTCTGTAAACTCTGCATGTACTCTGctctc
tttttttgtttttgtttttttaacccggggttaaaatcatttttcagtCT
TTTCCACCCAGGGGGTCGTAATGNTAACCCAGGggttaaaatcatttttc
agccttatccACCCAGGGGGTCGTAATAAGTAGTAATCAATAGATAATTG
ATTAATTAAATATCAATTACAATTGATAATCAATAGATGATTAAGGtcta
aaaaattgtgagtatcgaTGATCTattattataatgtaacaaagttctag
gcgcacgagggcctctggaactgatcgtgattatctttcaaaaaatttat
tcgGCCAGCCCTTAGTGGTAGACATTGTCCCAAAAAGTATACGTGGGCAT
CTCCAGCAGGAAAACCCAAAGAAAGCTCTTGTTTTGTCATTTCACGGATG
GCGTGGATCGGGAAAGGGTTTTGTAGCTGATATAATAGCAGAGCATATAT
ACAGAAAAGGTACACAGAGTATATTCTATACAAAATATATATCTGGGAAT
GAATTCACACATAAACAGAAGCTTGAACAATAGGGAGAGAGTGAAAGGAG
AGATTATTAGTGCAACCAAAGTTTGTGAACgttcaatatttattttcgat
gaaattgaaaaaaatgcctACAGGATTGATTGATATTTTGAAAGCTTACA
TTGATTTTCATCAGAATGTGGATGGTATTGATTatcgtaaaaatattttc
attttaatggGGAACACTGGTGGTGATGAGATAAACAGGGAAGTATATGA
ACATTTCAAATCAGGAAAATCAAGACGGGAAATTACTGCCAAGCAAATGG
AATACATATTATCTAATGATGCATTCAATAATAAAGGTGGTTTAAATGAT
GCAAATATTTTGCTTTCAGGATTAATAGACTATTACGTTCCTTTCTTACC
TTTAGAAAGAGAACACTTGAAACAGTGTGTACGAGCAGAGTTAAGACGAA
GAAATAAGGCTTCAAATGAAGAAGTTGTTAATAATGTAGCCGATGATATG
TTTTATTTCCCTGCAAAGAAACCACTATTTGCAGAACATGGATGTAAACA
GGTTAATAAAAAGCTGGATAAATACATTGATTACTAAGTATCTTTAAACT
GATTTTGGATGGATCATAACATTTCAGTCATTTATACTGTATTTTAAGgt
tcaaaacttttggaaacTGAATTTATCAACGCATCACATTTCAATATAAT
ACAAACACACGCTCATACAAACATGGAATCACTATTTCATAATAATTACT
GAGTAAGAAAAGCATAAACATTTGACACAACACACTTCCCTTCATGCAGA
CAAACAGCTTTTAATTCCTTCATAGGAGCTGATATCTTATTGGATTTGTA
ATTTTACTGGAGTTGTCTTTTAAAAATGTGTATGTTGGATGTTAATGGTT
ATAACACTGTGTCGTCAAACCAGAAAATTGTCGTTTctaaaaatttagga
aaaatgCATCCATTTGTTTCTATACTACTGTGAAAAGTCGGCACAGAATA
AAGGAAGTCTAATCGACTCCTATTTATTTTACTGCTTCTGAAAATCGAAG
AAGATCAGCCTAAGAATACGTGATTTAAGACTCGGATTTAAGTTATACTT
TTGACGGATGTTCAGCTTGAATAATTGTCTTAAGAAATTAACCTGAATAG
ACATTAAAAGTGAAGGTACTTTCTCATAGAAATATGCAAATCTGACTCTC
ATACTTTTTTTAAGTCATAAttccaataaaaaaagtagCGGATTGAAGAT
TCGTTAACTTTTTTAGAAAGAGTGAACACTGTGCTATTTGGTGTAATTCT
TTTCTGATTTAAATAGATAAAAAAGATAAAGCTTTACTAATAATTCACAA
ATAAAGAATTATGTTGAAGAAAGTACTAAAATTTTAGAGTATAAtatgat
caaaatttttcaccatAACTCAAAGATATTCAGGAGTGAAATCTaccaaa
gtttgaaagtaagataaaatgaaattcttagAGGtgaaaaattcggaatt
ccgaaaattcaaaagtttaggaAACATTATAATTagaaaaattcggaatt
ccgaaaaattggaaatattcaGAATTTCGAAAAGTCAGAAGCattcggaa
ttccgaaaaaatagtaaaaattcggaattccgaaaaataaaaagattaga
aatttcgaaaaaatcataaaaattcggaattccgaaaaataaaaagatta
gaaattttgaaaaaatcataaaaattcggaattccgaaaaatcataaaaa
ctcggaattccgaaaaaaatgGAAACTGAAAGTGATTTAAATTAACAAGA
TTCAGATTAAGACGATGTAACTGCAGCAATACCAATATTACTGCTGATAG
TTAGGGTATTTACAAAGTATTATCTGATGTGATATATAGGTTGTTGTACT
TGAAAGGAGTCTCTTTGAATTCTTCGTGTATTACTTTCTTAAATCCTGTA
ATTTGCTTTTGGTCTTCATTGAAATCTTTCCAATAATTCACATTAGTCAG
CATTTTCTTCAATACTCGTTCAGATGGTGCTTTTATAGCACAGTTTTGTC
AGCGCTATTCAGCTGTGAACGTGCGCATGTCCCAACATTTACCTTAAAAA
ATAAAGAGTTATGTTTCACTTGTACAGTTTCACATCCTTCTAGCATTCAA
TAGTTTTGTGTGCAATCAAAAagctctcaaaataaaataaaacgtcCAGC
ATTTGCTGTTTGCGCTGCATTCtgaattcttttaaaattactAAGGTGTT
ATAAATATATGCAGTGTGACGAGAAAACTTACAGCATTCATATCTGTTCG
TCATCGGCTTGCCATCTCTGGTGtttgttattatttattttcttgatGGT
GGGACAGTGCTTCAGTCGAAGCTCCAGATGGAACTCTGATTGATAGCATT
GTAGCATTGCATATCTGATTGTTTTTTCGATAAAAACACAGCTCTGACTA
CCTCGATGTCATTAAAAAGGCTGAATCCACGAGAGCAGACTTTTTAAACA
TGCTGGCGCTCTAACCCGCTCTGATATCATATCTTCTTTTGCTTATACTT
TTATACGTTCAGTATTTCAGCAACTTTTTTCGTAAATGAAGCCTCATGAT
TTAAATCATATCTTCTGTTTTtcgagaaagaaaagaaaaaaaaatttgtc
accTATGATACTTTGAAGTATTTCggaatgattttaaaattcaattaaaC
TAATTGGTTTCTTCGCACAAGCTAATCTTTTCGTGATTCATTGTATTCTT
TTGCGAAGGCGTCAAAAATTTCGTTAACAGAGCCTTTTGTTATTAATAAA
GAATTTTTAGTTACCCCCTGCCAGTTTGAACTTATATACACATAATAGCT
GAGAGGATGATAAAAACAGGGGGTTATTgagaattatatttttaatcaaC
TGAAAAAAGAGCTCTTGCTTATCACTATCAGCCACGAAACATTGTTGTGT
AGTTGTGATatgaaaatgaatttcaagaaaaGATAGCATTTTAGCattta
taatttatttcatATATTCATCTTTTCTAAAGTACTTGTGGTTGTACCGG
TTCgtaaatttgaaaagattttgtcaagaAAAACCTGATTTCTCTGTTGT
aattcataaaaagtttttaatcgagATTTGCAATATATTTCTTTGAAGAA
TTTTGACAAACCATGTTCTGACTTTGTTAACTTTTTCTTTGCATTGGCAT
GATTGCTTGATTGCTGTGTAAAATTGCGTACCCAAACACATCGAGGAAAT
ACATTGTCAAATTTCTTCTGACATTTTGGATACAGCATGAAGTGCAGTGC
CACAAATACTAATCATTTGATAATACTCTTTTTTCGTTACAGCTGATATG
TCAACACGCACATCCAAAATGGCCATTTTCGAATTGAATAATCTGTAACC
GAAATCGATGTCTGTCCCGATCACCCCTTctaacgaaaaaaaatctggaa
gACTTGGAACGATTATGATCAAAGATTCCTCGACGTTAATTACAACCTAG
CCAACTCTCGATCGTCGTGTTTCTTGTAAACTCTTGGATATGTAGTGACA
ATAAAAACGGCGTGTGATGGGTACAAGCTGGCTAATAACAAACAAcgatc
ttgctccacatttgattCTTGAATTGTTGGAAATGTTCAAACATTATTAC
TTAGAAAACTAAGCCTGAGCTAATGCACTCTCAAAGGCTGTCAGAATTCT
TATgttagtacacgttttttataagaacaatctatataagaacataaggc
ttcgatggccaaaatgttcaaaacatgctaagaacattttaagggtttgc
ggactctaaaacgcCCGATTtcgaaatggacaaaaataaactggaaattg
ggaaaataagaacatattaagaatatttttaggctttaaaaaataagatt
atccaaaggctccaaaattttggatgttcttaaaaaaagaacTTGTACAG
GTGTTCTTGAAAGTTAACCTAAATAACCTAAAATTCAAAAGCATGCAAGC
TATTATTTTCTAAGATATGAGTGACGTAGCAAAATTCGACTTGAATTCTC
TATGCTAAGTGCTAAGGTATAGACAATTTTATGATCCCTGACGACAATGA
CCAAATTTGTTcgtcaaatttagaaaatatggGAAGTGTTTGGATATTTT
GTTATTTCTAGAACANAAAATGTTGTAGATATTCAATTTGGTAAGTAAAA
TGacagttcttttttgttttttcctagCCTTTCTTGACTCTCATCGATTC
TTAGGAATCAATtgaacaaattgaaaatttactcCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048829-exon-scaffold_147-1491911889:221742..221815 | TCONS_00048829-exon-scaffold_147-1491911889:221742..221815 | Clytia hemisphaerica | exon |
| TCONS_00048829-exon-scaffold_147-1510915933:221742..221815 | TCONS_00048829-exon-scaffold_147-1510915933:221742..221815 | Clytia hemisphaerica | exon |
| TCONS_00048829-exon-scaffold_147-1575043694:221742..221815 | TCONS_00048829-exon-scaffold_147-1575043694:221742..221815 | Clytia hemisphaerica | exon |
| TCONS_00048829-exon-scaffold_147-1491911889:226734..227680 | TCONS_00048829-exon-scaffold_147-1491911889:226734..227680 | Clytia hemisphaerica | exon |
| TCONS_00048829-exon-scaffold_147-1510915933:226734..227680 | TCONS_00048829-exon-scaffold_147-1510915933:226734..227680 | Clytia hemisphaerica | exon |
| TCONS_00048829-exon-scaffold_147-1575043694:226734..227680 | TCONS_00048829-exon-scaffold_147-1575043694:226734..227680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:221742..227680 + |
Blast
The following BLAST results are available for this feature:
|
