TCONS_00049327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049327
Unique NameTCONS_00049327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049327 ID=TCONS_00049327|Name=TCONS_00049327|organism=Clytia hemisphaerica|type=transcript|length=270bp
GCTCTGCTTAAAAATGGTCTGCTATACAGTATTAGACTAACGGTACAGTT
TTCTTTTAGAGTTGTTTTAAATTAGTAAGTAGTTCCGTCTCAAAACAGAg
taattattattttgaatacaccttttcgaccatagcCGCCAATTACCGCG
CAGGCATTTTTTATCCGCTTTATCCCatactaaaaccgtcccagtccttt
tttttgCACCTTTAGACGATagaaaaagttgtcaaaaaggattgaatcga
gtttagggggatgattaaat
Run BLAST on NCBI

transcript from alignment at scaffold_154:302821..303090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049327 ID=TCONS_00049327|Name=TCONS_00049327|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_154:302821..303090 (Clytia hemisphaerica)
atttaatcatccccctaaactcgattcaatcctttttgacaactttttct
ATCGTCTAAAGGTGcaaaaaaaaggactgggacggttttagtatGGGATA
AAGCGGATAAAAAATGCCTGCGCGGTAATTGGCGgctatggtcgaaaagg
tgtattcaaaataataattacTCTGTTTTGAGACGGAACTACTTACTAAT
TTAAAACAACTCTAAAAGAAAACTGTACCGTTAGTCTAATACTGTATAGC
AGACCATTTTTAAGCAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031298XLOC_031298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049327-exon-scaffold_154-1491911889:302821..303090TCONS_00049327-exon-scaffold_154-1491911889:302821..303090Clytia hemisphaericaexon
TCONS_00049327-exon-scaffold_154-1510915933:302821..303090TCONS_00049327-exon-scaffold_154-1510915933:302821..303090Clytia hemisphaericaexon
TCONS_00049327-exon-scaffold_154-1575043694:302821..303090TCONS_00049327-exon-scaffold_154-1575043694:302821..303090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:302821..303090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.764262	0	0	0.682122	0.955139	0	0	0	0.376912	3.91427	0	0.345347	0	0	0	1.26083	1.64383	0	0	0.59076	0	0	1.55419	3.31734	0.629022	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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