TCONS_00051978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051978
Unique NameTCONS_00051978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051978 ID=TCONS_00051978|Name=TCONS_00051978|organism=Clytia hemisphaerica|type=transcript|length=502bp
attatttatgatgaaattttcGTTGAGAATCACCGAATCACAAGAAATTG
GGTTACTTAGTCAATGACCACCCTTCGATTTTATcggtgatcgaatactc
actcGACTTCAATTTATGGCATTTTCTTCGACTAATTTCGATTCGTTCAA
TCACTTTGATTACCTTTCAATGACTGTCGACTACTTTCGATCATATCGAA
TACcttcgatcatattgaataccttcgatcatattgaataccttcgattG
TATCGAGTACCTTTGATCATCGCACCGGGGTCATTACGTGTGTTCGTGAG
TTCTGTATATCGGAAATTTAACTTAGATTATCGGGGTTGGCGTCTTCTTT
TATTGGGCGGGAGATTGGGATGATATCAATTTTCCGTTCGTACACACGGG
GCAGGACTGGGGGTGGTACAGTTGGGTTTTTCTTTCTAACCAATTCAGAT
GGAGAAATGGCGGCACCACCACACCAACAAAGGACTAACTACTGGGTGGG
GT
Run BLAST on NCBI

transcript from alignment at scaffold_207:73770..74271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051978 ID=TCONS_00051978|Name=TCONS_00051978|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at scaffold_207:73770..74271 (Clytia hemisphaerica)
ACCCCACCCAGTAGTTAGTCCTTTGTTGGTGTGGTGGTGCCGCCATTTCT
CCATCTGAATTGGTTAGAAAGAAAAACCCAACTGTACCACCCCCAGTCCT
GCCCCGTGTGTACGAACGGAAAATTGATATCATCCCAATCTCCCGCCCAA
TAAAAGAAGACGCCAACCCCGATAATCTAAGTTAAATTTCCGATATACAG
AACTCACGAACACACGTAATGACCCCGGTGCGATGATCAAAGGTACTCGA
TACaatcgaaggtattcaatatgatcgaaggtattcaatatgatcgaagG
TATTCGATATGATCGAAAGTAGTCGACAGTCATTGAAAGGTAATCAAAGT
GATTGAACGAATCGAAATTAGTCGAAGAAAATGCCATAAATTGAAGTCga
gtgagtattcgatcaccgATAAAATCGAAGGGTGGTCATTGACTAAGTAA
CCCAATTTCTTGTGATTCGGTGATTCTCAACgaaaatttcatcataaata
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032903XLOC_032903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051978-exon-scaffold_207-1491911889:73770..74271TCONS_00051978-exon-scaffold_207-1491911889:73770..74271Clytia hemisphaericaexon
TCONS_00051978-exon-scaffold_207-1510915933:73770..74271TCONS_00051978-exon-scaffold_207-1510915933:73770..74271Clytia hemisphaericaexon
TCONS_00051978-exon-scaffold_207-1575043694:73770..74271TCONS_00051978-exon-scaffold_207-1575043694:73770..74271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:73770..74271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121084	0.472306	1.01487	0.85894	2.81696	1.29033	2.5926	2.91418	2.00504	1.13749	2.33082	3.25728	3.11328	3.34523	0	0.161557	0	0.403442	0.128715	0.298212	0.351214	0.51393	0	0.252439	4.49748	3.91642	0.168981	0.531578	0.300519	0.136927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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