TCONS_00049343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049343
Unique NameTCONS_00049343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049343 ID=TCONS_00049343|Name=TCONS_00049343|organism=Clytia hemisphaerica|type=transcript|length=410bp
CGATAAACTTTTTATAAATTGATAAACTttatacaaaaataaattttgat
attttatattcaATAAGAAAAAACAGGAACAATGATAAAATCCACAGCAA
ATGATAATACCAGAAATagaaattcaatcaaaaattttgcccaGTTCCAA
ACTGAAACCCTATGGGTTGAAAGTTCCGAGCTTATTCGAGGCTCGTAATT
CAGGGCTTTCTAAACTTCTATCCAAAAGGAGCATGTTTTCTCGTAGGATT
GGTAGAGTTGATTCCTGAGTCGCTCCTTAGCCTAGTTGGCAATAATCGAA
TCTCGGATCCATTCTGCTCACACTACGCTCTGCTCTACCATGCAAAGGAT
GTgacgaatgttttgattttacctggttgttcagccaaaacattCAAAGC
CACGTTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_154:700696..701105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049343 ID=TCONS_00049343|Name=TCONS_00049343|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_154:700696..701105 (Clytia hemisphaerica)
GGTAAACGTGGCTTTGaatgttttggctgaacaaccaggtaaaatcaaaa
cattcgtcACATCCTTTGCATGGTAGAGCAGAGCGTAGTGTGAGCAGAAT
GGATCCGAGATTCGATTATTGCCAACTAGGCTAAGGAGCGACTCAGGAAT
CAACTCTACCAATCCTACGAGAAAACATGCTCCTTTTGGATAGAAGTTTA
GAAAGCCCTGAATTACGAGCCTCGAATAAGCTCGGAACTTTCAACCCATA
GGGTTTCAGTTTGGAACtgggcaaaatttttgattgaatttctATTTCTG
GTATTATCATTTGCTGTGGATTTTATCATTGTTCCTGTTTTTTCTTATtg
aatataaaatatcaaaatttatttttgtataaAGTTTATCAATTTATAAA
AAGTTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031314XLOC_031314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049343-exon-scaffold_154-1491911889:700696..701105TCONS_00049343-exon-scaffold_154-1491911889:700696..701105Clytia hemisphaericaexon
TCONS_00049343-exon-scaffold_154-1510915933:700696..701105TCONS_00049343-exon-scaffold_154-1510915933:700696..701105Clytia hemisphaericaexon
TCONS_00049343-exon-scaffold_154-1575043694:700696..701105TCONS_00049343-exon-scaffold_154-1575043694:700696..701105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:700696..701105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.516364	0	0.391043	0.238028	0	0.226927	0.212446	1.04117	0.184236	0	0.352656	3.75644	2.07246	1.50339	0.968021	0	1.08649	3.94023	4.51585	1.70656	2.4972	2.02379	1.28794	3.79014	2.53696	1.9362	2.32466	0.783632	0.399199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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