|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049316 ID=TCONS_00049316|Name=TCONS_00049316|organism=Clytia hemisphaerica|type=transcript|length=2088bp
NNGAGTTTTTTGATAACGGGTACATGTTACCTGATGCTGATCAAACACTT
GAAGAAATGGTGACTGAGAATGGAGGTCAAATCGAAGAAGGCTTTCATCT
CCGGAAAATCTTGGTTAAACCAACCGACGACCATCAAGATGCAACAGCAA
CACGCATTGTCTTGCAGAACACCAAAACCAAAGAGTTTATCACAAGGAAT
GTGAAATCACTTTATCTTTCACTTGGTCCAAGTATGAGTCAACTGAAAGT
ATTACCACCCCTTAAAGATCGAACTTTAATGAACAGTCTTTTTCAATCAT
CCAATCTAATGAAAACTATGTTACCCATGGCTGGTGGAACATGTACCTTC
TTGGTCAAAGTGGATATGTCTATTGTTCCTGaatcaaaattagaaagttT
CAGGACCCATTTGACAGGGGTTTTACTTCATATTGTTCGACTTGGTGAAA
AAGATGTTTACATCGATGGTAAGCATTTTAAGTATTTTACAATGCTGGTT
GCTGGTGCAGCAAGCGTCAATCTTGACCGCTACACCAATCCTGAGCTCAT
ATTAAACATGTTCGAATCTAATGCAAAGGAACTTCTCCAGTTAGGTCAAG
AGGGGATGGAATATGATATCTTATCTGTACGAAGTTGTGCTCGTGGTGTG
ACTTCATCCAATTCACCACAATTTTTGGCTCCACTCCAAAACACAGTTAT
GGTTTATGGCCTAGGTGGTGTTGGCATGACAACAATGGCCGCTAACGCTT
TATTTATGAAAGCCTTATTAGCGTTACGTACAGATGTTGCGGAGGGTAAA
ATCACTGAAAAggaatttttcaataatttgagaTCGAGCAACTACGAATC
GATACCACATTTTGATCACCCTAATCCATTCATTAGAGATAGCAGAAAAT
TTGTCAATCGAGATCTTCAACGTACAGCTAGAATGTTGGGTTTTCCAAAA
CGGCATTCGCAGGCTAATTCAATGGTCCAGCCGTTTATTTCTCAAGGTAT
CTCTAACAATTTTTTGAAGTGGATTCAAGCTAATATACCAACAGCataca
aaattacaaaaaacttGGTTAAGAAATAAAAACTACAATAATCGGAGAGC
AATACATTGATTAGCACACGAACATTTACATTCACCCAAAAACTTCGTGA
ATCTGAGCAAACCGATCTTGATCGAAATTTTGGTGTCTTTTTGAGAAGTC
GAAGGGATTAGATTAAGAAAATATTATCTGAAACATTAAAGGGACAGTGT
TTAGAGCGGACATTTTTAGAGCGGACTCAATTTATCGAGAGCATAAAACT
TTGTGAAACAACCTGGTTATGCAGGAGTGGCACAGTGGCACATAACATTT
TTACACACCAGATTTCGTGACCTTGGAGAACCAAGTTTGATTGAAATTTA
GAGAAATAAAGGAGAGtcagaaaaaaagtcagaaaaacattattaaaaaa
atattacgaAAGATACTTCCTCAAGCGATTTCTAAGATATTTTTGAAGCG
AATTCAAGCTAATTTACCGAGAGCATACATAGTGACCCTGGGGAATCCGa
gtttgaatgaaatttttgcGTATTTTTGAGATATATTGAGgggaaaaaaa
tataataagcTTTAGGAAAAATAAGGAAGGAAGAAACTTAgggagaaact
tttttgagaatcaaaTATGTTATATATTTATGTTATGATGAATTAAGTAT
TAAGTATGctgtaatgggcttttccagaaatagtctgtgtctcccctgtt
gaggatatccgatatccagggggttaacgatttttgttcaaaagtggata
tccagggggttaaatatctacaagggagcggataaccagggggtaaagtg
tcttttcaagtaaaaaatacgatatccaggggtaagcatctttataagag
aggatatcgagggggttaagcaaattttttagagtggatatccagggggt
ttgatacttcgaaaaattaatatcCTCAACAATCGCggtaaaaatttttt
attaaaataataaaaatcttATATTAATTTTAGCATTATGTAATTGATTG
TAATGTTGAGGGGTAAGTTctattttccaggggggggg Run BLAST on NCBI protein sequence of TCONS_00049316-protein >TCONS_00049316-protein ID=TCONS_00049316-protein|Name=TCONS_00049316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
EFFDNGYMLPDADQTLEEMVTENGGQIEEGFHLRKILVKPTDDHQDATAT
RIVLQNTKTKEFITRNVKSLYLSLGPSMSQLKVLPPLKDRTLMNSLFQSS
NLMKTMLPMAGGTCTFLVKVDMSIVPESKLESFRTHLTGVLLHIVRLGEK
DVYIDGKHFKYFTMLVAGAASVNLDRYTNPELILNMFESNAKELLQLGQE
GMEYDILSVRSCARGVTSSNSPQFLAPLQNTVMVYGLGGVGMTTMAANAL
FMKALLALRTDVAEGKITEKEFFNNLRSSNYESIPHFDHPNPFIRDSRKF
VNRDLQRTARMLGFPKRHSQANSMVQPFISQGISNNFLKWIQANIPTAYK
ITKNLVKK Run BLAST on NCBI transcript from alignment at scaffold_154:890004..892419- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049316 ID=TCONS_00049316|Name=TCONS_00049316|organism=Clytia hemisphaerica|type=transcript|length=2416bp|location=Sequence derived from alignment at scaffold_154:890004..892419- (Clytia hemisphaerica)
NNGAGTTTTTTGATAACGGGTACATGTTACCTGATGCTGATCAAACACTT
GAAGAAATGGTGACTGAGAATGGAGGTAATGATTAAAGTCTTTCAAAATC
ATTTCCCTTGATATCCCTTATTTGACCCTTATATAAGCTAACCGAATGGT
TCATTCCAACCATTTTTTCCGCGAATCAAAAAGGTGCTTAGAGCTAATTT
ACTTATACTGTAAAGTCTCTTTAGCTCACATACGCATGGGGAGCTCAAAT
TTGTTCGAGTTATGGAAATTTCGAGTTATGGAATAAGGTTTATAAGGCAT
TGTTAACAGAAAGAACGAAAAATACTTGTTCGAGTTAAGAGGGCATTCGA
ATTATAGAGGTTTGAGTTTAAGAGTTTCCACTGTATTTCCTTGTTATTGT
TAGGTCAAATCGAAGAAGGCTTTCATCTCCGGAAAATCTTGGTTAAACCA
ACCGACGACCATCAAGATGCAACAGCAACACGCATTGTCTTGCAGAACAC
CAAAACCAAAGAGTTTATCACAAGGAATGTGAAATCACTTTATCTTTCAC
TTGGTCCAAGTATGAGTCAACTGAAAGTATTACCACCCCTTAAAGATCGA
ACTTTAATGAACAGTCTTTTTCAATCATCCAATCTAATGAAAACTATGTT
ACCCATGGCTGGTGGAACATGTACCTTCTTGGTCAAAGTGGATATGTCTA
TTGTTCCTGAATCAAAATTAGAAAGTTTCAGGACCCATTTGACAGGGGTT
TTACTTCATATTGTTCGACTTGGTGAAAAAGATGTTTACATCGATGGTAA
GCATTTTAAGTATTTTACAATGCTGGTTGCTGGTGCAGCAAGCGTCAATC
TTGACCGCTACACCAATCCTGAGCTCATATTAAACATGTTCGAATCTAAT
GCAAAGGAACTTCTCCAGTTAGGTCAAGAGGGGATGGAATATGATATCTT
ATCTGTACGAAGTTGTGCTCGTGGTGTGACTTCATCCAATTCACCACAAT
TTTTGGCTCCACTCCAAAACACAGTTATGGTTTATGGCCTAGGTGGTGTT
GGCATGACAACAATGGCCGCTAACGCTTTATTTATGAAAGCCTTATTAGC
GTTACGTACAGATGTTGCGGAGGGTAAAATCACTGAAAAGGAATTTTTCA
ATAATTTGAGATCGAGCAACTACGAATCGATACCACATTTTGATCACCCT
AATCCATTCATTAGAGATAGCAGAAAATTTGTCAATCGAGATCTTCAACG
TACAGCTAGAATGTTGGGTTTTCCAAAACGGCATTCGCAGGCTAATTCAA
TGGTCCAGCCGTTTATTTCTCAAGGTATCTCTAACAATTTTTTGAAGTGG
ATTCAAGCTAATATACCAACAGCATACAAAATTACAAAAAACTTGGTTAA
GAAATAAAAACTACAATAATCGGAGAGCAATACATTGATTAGCACACGAA
CATTTACATTCACCCAAAAACTTCGTGAATCTGAGCAAACCGATCTTGAT
CGAAATTTTGGTGTCTTTTTGAGAAGTCGAAGGGATTAGATTAAGAAAAT
ATTATCTGAAACATTAAAGGGACAGTGTTTAGAGCGGACATTTTTAGAGC
GGACTCAATTTATCGAGAGCATAAAACTTTGTGAAACAACCTGGTTATGC
AGGAGTGGCACAGTGGCACATAACATTTTTACACACCAGATTTCGTGACC
TTGGAGAACCAAGTTTGATTGAAATTTAGAGAAATAAAGGAGAGTCAGAA
AAAAAGTCAGAAAAACATTATTAAAAAAATATTACGAAAGATACTTCCTC
AAGCGATTTCTAAGATATTTTTGAAGCGAATTCAAGCTAATTTACCGAGA
GCATACATAGTGACCCTGGGGAATCCGAGTTTGAATGAAATTTTTGCGTA
TTTTTGAGATATATTGAGGGGAAAAAAATATAATAAGCTTTAGGAAAAAT
AAGGAAGGAAGAAACTTAGGGAGAAACTTTTTTGAGAATCAAATATGTTA
TATATTTATGTTATGATGAATTAAGTATTAAGTATGCTGTAATGGGCTTT
TCCAGAAATAGTCTGTGTCTCCCCTGTTGAGGATATCCGATATCCAGGGG
GTTAACGATTTTTGTTCAAAAGTGGATATCCAGGGGGTTAAATATCTACA
AGGGAGCGGATAACCAGGGGGTAAAGTGTCTTTTCAAGTAAAAAATACGA
TATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCGAGGGGGTTAAGCA
AATTTTTTAGAGTGGATATCCAGGGGGTTTGATACTTCGAAAAATTAATA
TCCTCAACAATCGCGGTAAAAATTTTTTATTAAAATAATAAAAATCTTAT
ATTAATTTTAGCATTATGTAATTGATTGTAATGTTGAGGGGTAAGTTCTA
TTTTCCAGGGGGGGGG Coding sequence (CDS) from alignment at scaffold_154:890004..892419- >TCONS_00049316 ID=TCONS_00049316|Name=TCONS_00049316|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_154:890004..892419- (Clytia hemisphaerica)
GTCAAATCGAAGAAGGCTTTCATCTCCGGAAAATCTTGGTTAAACCAACC
GACGACCATCAAGATGCAACAGCAACACGCATTGTCTTGCAGAACACCAA
AACCAAAGAGTTTATCACAAGGAATGTGAAATCACTTTATCTTTCACTTG
GTCCAAGTATGAGTCAACTGAAAGTATTACCACCCCTTAAAGATCGAACT
TTAATGAACAGTCTTTTTCAATCATCCAATCTAATGAAAACTATGTTACC
CATGGCTGGTGGAACATGTACCTTCTTGGTCAAAGTGGATATGTCTATTG
TTCCTGAATCAAAATTAGAAAGTTTCAGGACCCATTTGACAGGGGTTTTA
CTTCATATTGTTCGACTTGGTGAAAAAGATGTTTACATCGATGGTAAGCA
TTTTAAGTATTTTACAATGCTGGTTGCTGGTGCAGCAAGCGTCAATCTTG
ACCGCTACACCAATCCTGAGCTCATATTAAACATGTTCGAATCTAATGCA
AAGGAACTTCTCCAGTTAGGTCAAGAGGGGATGGAATATGATATCTTATC
TGTACGAAGTTGTGCTCGTGGTGTGACTTCATCCAATTCACCACAATTTT
TGGCTCCACTCCAAAACACAGTTATGGTTTATGGCCTAGGTGGTGTTGGC
ATGACAACAATGGCCGCTAACGCTTTATTTATGAAAGCCTTATTAGCGTT
ACGTACAGATGTTGCGGAGGGTAAAATCACTGAAAAGGAATTTTTCAATA
ATTTGAGATCGAGCAACTACGAATCGATACCACATTTTGATCACCCTAAT
CCATTCATTAGAGATAGCAGAAAATTTGTCAATCGAGATCTTCAACGTAC
AGCTAGAATGTTGGGTTTTCCAAAACGGCATTCGCAGGCTAATTCAATGG
TCCAGCCGTTTATTTCTCAAGGTATCTCTAACAATTTTTTGAAGTGGATT
CAAGCTAATATACCAACAGCATACAAAATTACAAAAAACTTGGTTAAGAA
ATAAGAGTTTTTTGATAACGGGTACATGTTACCTGATGCTGATCAAACAC
TTGAAGAAATGGTGACTGAGAATGGAGGTCAAATCGAAGAAGGCTTTCAT
CTCCGGAAAATCTTGGTTAAACCAACCGACGACCATCAAGATGCAACAGC
AACACGCATTGTCTTGCAGAACACCAAAACCAAAGAGTTTATCACAAGGA
ATGTGAAATCACTTTATCTTTCACTTGGTCCAAGTATGAGTCAACTGAAA
GTATTACCACCCCTTAAAGATCGAACTTTAATGAACAGTCTTTTTCAATC
ATCCAATCTAATGAAAACTATGTTACCCATGGCTGGTGGAACATGTACCT
TCTTGGTCAAAGTGGATATGTCTATTGTTCCTGAATCAAAATTAGAAAGT
TTCAGGACCCATTTGACAGGGGTTTTACTTCATATTGTTCGACTTGGTGA
AAAAGATGTTTACATCGATGGTAAGCATTTTAAGTATTTTACAATGCTGG
TTGCTGGTGCAGCAAGCGTCAATCTTGACCGCTACACCAATCCTGAGCTC
ATATTAAACATGTTCGAATCTAATGCAAAGGAACTTCTCCAGTTAGGTCA
AGAGGGGATGGAATATGATATCTTATCTGTACGAAGTTGTGCTCGTGGTG
TGACTTCATCCAATTCACCACAATTTTTGGCTCCACTCCAAAACACAGTT
ATGGTTTATGGCCTAGGTGGTGTTGGCATGACAACAATGGCCGCTAACGC
TTTATTTATGAAAGCCTTATTAGCGTTACGTACAGATGTTGCGGAGGGTA
AAATCACTGAAAAGGAATTTTTCAATAATTTGAGATCGAGCAACTACGAA
TCGATACCACATTTTGATCACCCTAATCCATTCATTAGAGATAGCAGAAA
ATTTGTCAATCGAGATCTTCAACGTACAGCTAGAATGTTGGGTTTTCCAA
AACGGCATTCGCAGGCTAATTCAATGGTCCAGCCGTTTATTTCTCAAGGT
ATCTCTAACAATTTTTTGAAGTGGATTCAAGCTAATATACCAACAGCATA
CAAAATTACAAAAAACTTGGTTAAGAAATAAGAGTTTTTTGATAACGGGT
ACATGTTACCTGATGCTGATCAAACACTTGAAGAAATGGTGACTGAGAAT
GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049316-exon-scaffold_154-1575043694:892345..892419 | TCONS_00049316-exon-scaffold_154-1575043694:892345..892419 | Clytia hemisphaerica | exon |
| TCONS_00049316-exon-scaffold_154-1575043694:890004..892016 | TCONS_00049316-exon-scaffold_154-1575043694:890004..892016 | Clytia hemisphaerica | exon |
| TCONS_00049316-exon-scaffold_154-1510915933:892345..892419 | TCONS_00049316-exon-scaffold_154-1510915933:892345..892419 | Clytia hemisphaerica | exon |
| TCONS_00049316-exon-scaffold_154-1510915933:890004..892016 | TCONS_00049316-exon-scaffold_154-1510915933:890004..892016 | Clytia hemisphaerica | exon |
| TCONS_00049316-exon-scaffold_154-1491911889:892345..892419 | TCONS_00049316-exon-scaffold_154-1491911889:892345..892419 | Clytia hemisphaerica | exon |
| TCONS_00049316-exon-scaffold_154-1491911889:890004..892016 | TCONS_00049316-exon-scaffold_154-1491911889:890004..892016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:890004..892419 - |
Blast
The following BLAST results are available for this feature:
|
