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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049361 ID=TCONS_00049361|Name=TCONS_00049361|organism=Clytia hemisphaerica|type=transcript|length=1657bpRun BLAST on NCBI transcript from alignment at scaffold_155:50915..63201- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049361 ID=TCONS_00049361|Name=TCONS_00049361|organism=Clytia hemisphaerica|type=transcript|length=12287bp|location=Sequence derived from alignment at scaffold_155:50915..63201- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00049361 vs. Swiss-Prot (Human)
Match: ZFR (Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.061e-68 Identity = 72/124 (58.06%), Postives = 90/124 (72.58%), Query Frame = 3
Query: 738 LKARANQLTSCVITIRIVRDLCQRSAAFKPLSGWAIELLCEKAIGSSFGPIPPGEAFRRVLEAVSSGVFLPGGTGLIDPCEKEKTDAAANLTAQEREDMTAAAQQALRSFAFRQLHKVLGVEPL 1109
+ARAN L SCVI IRI+RDLCQR + WA+ELL EKAI S+ P PG+A RRV E +SSG+ L G GL+DPCEK+ D A +T Q+RED+T++AQ ALR AFRQ+HKVLG++PL
Sbjct: 912 FQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPL 1035 HSP 2 Score: 123.635 bits (309), Expect = 2.061e-68 Identity = 69/185 (37.30%), Postives = 105/185 (56.76%), Query Frame = 2
Query: 170 PPTPDDKLIMAKHSDIYPSDSELKQVQSTVAAVEKALKMVSDSLGDKDSTPGEIKPLIXXXXXXXXXXXXXXXXXXXPLMKSAAAAAGNNRTLKGVMRVGPLCTGLLLKGQLAVELVVLCADKPTKTLLTKVGKLVPDKLKEAAPEAKYNMSISVADCCINITSTDEPKCTVKVTLTSPACRDED 724
P + DD+ +M KH+ IYP++ EL+ VQ V+ E+ALK+VSDSL + + + G +R LKGV+RVG L GLLL+G V LV+LC++KP+KTLL+++ + +P +L +PE KY++ +V++ I + S EPK V +TLTSP R+E+
Sbjct: 719 PDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKNK--------------------------EGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPE-KYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREEN 876 The following BLAST results are available for this feature:
BLAST of TCONS_00049361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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