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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049363 ID=TCONS_00049363|Name=TCONS_00049363|organism=Clytia hemisphaerica|type=transcript|length=2658bpRun BLAST on NCBI transcript from alignment at scaffold_155:50915..67031- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049363 ID=TCONS_00049363|Name=TCONS_00049363|organism=Clytia hemisphaerica|type=transcript|length=16117bp|location=Sequence derived from alignment at scaffold_155:50915..67031- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049363 vs. Swiss-Prot (Human)
Match: ZFR (Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 2.288e-113 Identity = 209/599 (34.89%), Postives = 286/599 (47.75%), Query Frame = 1
Query: 202 LHYCEVCKISCAGPQTYKEHLEGQKHXXXXXXXXXXXXXXXP-----GTH---KCELCDVICTGKDAFNAHIKGANHLKTIKLHQKLGKPIPE-------------------------------------------IKAIETT--------------AEPKKANVVKTMPLKMNFVGGTKLTSTGXXXXXXXXXXXXXXXXXXXXXXXXXXSESTDQEVPV----------EGTPIGESYVEDIKSDVGKVIGFKCTLCDCRFNDHVAKMAHIKGRRHRMSYKKKVDRTIHVEMKGSKRKQAGVALXXXXXXXXXXXXXQNAFKQKQFEQMQ------WERQLRMREEELSRWERDEYMRRANEDR-YWTRPDKSRM---HEMDFYEWERRENYMEHPGPMFHRQGPP---PPTPDDKLIMAKHSDIYPSDSELKQVQSTVAAVEKALKMVSDSLGDKD---STPGEIKPLIXXXXXXXXXXXXXXXXXXXPLMKSAAAAAGNNRTLKGVMRVGPLCTGLLLKGQLAVELVVLCADKPTKTLLTKVGKLVPDKLKEAAPEAKYNMSISVADCCINITSTDEPKCTVKVTLTSPACRDED 1725
+HYC+VCKISCAGPQTYKEHLEGQKHKKK AA + GT +CELCDV CTG DA+ AHI+GA H K +KLH KLGKPIP +K + TT A P KT K+NFVGG KL STG + + E + T+ + T E PV + P+G YVE++++D GKVI F C LC+C FND AK H+KGRRHR+ YKKKV+ + VE+K S R + ++K +QMQ + E+ R+E D Y RR E++ +W D+ RM + P + P P + DD+ +M KH+ IYP++ EL+ VQ V+ E+ALK+VSDSL + + + G+ K G +R LKGV+RVG L GLLL+G V LV+LC++KP+KTLL+++ + +P +L +PE KY++ +V++ I + S EPK V +TLTSP R+E+
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNSSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSVATSSMKGLTTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINFVGGNKLQSTGNKAEDIKGTECVKSTPVTSAVQIPEVKQDTVSE-PVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIR-------------------ARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWD--DRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKNKEGDDK-----------------------------KEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPE-KYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREEN 876 HSP 2 Score: 155.606 bits (392), Expect = 2.288e-113 Identity = 72/124 (58.06%), Postives = 90/124 (72.58%), Query Frame = 2
Query: 1739 LKARANQLTSCVITIRIVRDLCQRSAAFKPLSGWAIELLCEKAIGSSFGPIPPGEAFRRVLEAVSSGVFLPGGTGLIDPCEKEKTDAAANLTAQEREDMTAAAQQALRSFAFRQLHKVLGVEPL 2110
+ARAN L SCVI IRI+RDLCQR + WA+ELL EKAI S+ P PG+A RRV E +SSG+ L G GL+DPCEK+ D A +T Q+RED+T++AQ ALR AFRQ+HKVLG++PL
Sbjct: 912 FQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPL 1035 The following BLAST results are available for this feature:
BLAST of TCONS_00049363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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