TCONS_00049383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049383
Unique NameTCONS_00049383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049383 ID=TCONS_00049383|Name=TCONS_00049383|organism=Clytia hemisphaerica|type=transcript|length=650bp
cgaattttCTCTAATCTTTCGGAAATATTGACCCTCTAAAGATTATGGAC
ctctttatattttatatttatatttttgtttttgcaaaCTTTGGTAAGAT
TTTTCAGGTATGAACTAGTTACTCTTCCACCCATTGCCACTCATCCATGC
CCGTAATCATAACCTGTTTGCTTGGACTACATTCTGAACCTgggcaaaaa
agaaaatatgatgtttttcACTCTCGGTAACTTCCTGTTAGGAATAGCTT
TTACACTGAAAGAATACGCCTATCAACCCTTGCGTTTTAAAAGTTGAGTA
AAAGGAGTTTTGAAGATAATGTCGCAGTCTACCAGGCTCTCACGAATAAA
GAACTATCACCGATAGTTTTTCATTAGTTTTAGCACAAAGTTAAAAGACG
AACTTGCAATGAGGACTGTAACCATAAACAAACTGAAGAATAATAGGTCC
GCAAAATGTGAAGAGTGTAGCTTTTTGTGTAAATCCCTATTTCCGTCTGA
CgcgaaaatctattttgaacACTGAAGAAAGACTTTGAAATAATACTGGA
ATAGTTGAAAACGAAGTCAGTGTCCAAAAATGTTTAAATAAAATGAATCT
CTAAAATTCAATGGGGAAGAAAGGGTAACCTTTCGGTACTGTTGAATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_155:172835..173484

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049383 ID=TCONS_00049383|Name=TCONS_00049383|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_155:172835..173484 (Clytia hemisphaerica)
AAAATTCAACAGTACCGAAAGGTTACCCTTTCTTCCCCATTGAATTTTAG
AGATTCATTTTATTTAAACATTTTTGGACACTGACTTCGTTTTCAACTAT
TCCAGTATTATTTCAAAGTCTTTCTTCAGTgttcaaaatagattttcgcG
TCAGACGGAAATAGGGATTTACACAAAAAGCTACACTCTTCACATTTTGC
GGACCTATTATTCTTCAGTTTGTTTATGGTTACAGTCCTCATTGCAAGTT
CGTCTTTTAACTTTGTGCTAAAACTAATGAAAAACTATCGGTGATAGTTC
TTTATTCGTGAGAGCCTGGTAGACTGCGACATTATCTTCAAAACTCCTTT
TACTCAACTTTTAAAACGCAAGGGTTGATAGGCGTATTCTTTCAGTGTAA
AAGCTATTCCTAACAGGAAGTTACCGAGAGTgaaaaacatcatattttct
tttttgcccAGGTTCAGAATGTAGTCCAAGCAAACAGGTTATGATTACGG
GCATGGATGAGTGGCAATGGGTGGAAGAGTAACTAGTTCATACCTGAAAA
ATCTTACCAAAGtttgcaaaaacaaaaatataaatataaaatataaagag
GTCCATAATCTTTAGAGGGTCAATATTTCCGAAAGATTAGAGaaaattcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031347XLOC_031347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049383-exon-scaffold_155-1491911889:172835..173484TCONS_00049383-exon-scaffold_155-1491911889:172835..173484Clytia hemisphaericaexon
TCONS_00049383-exon-scaffold_155-1510915933:172835..173484TCONS_00049383-exon-scaffold_155-1510915933:172835..173484Clytia hemisphaericaexon
TCONS_00049383-exon-scaffold_155-1575043694:172835..173484TCONS_00049383-exon-scaffold_155-1575043694:172835..173484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:172835..173484 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804484	0	0.0910878	0	0.108489	0.171459	0.103429	0.484145	0.0677923	0	0	0.267891	0	0	0.593856	1.37264	0	0.0619002	0	0.0894889	0.155564	0.227636	0	0	0	0	0.110311	0.117727	0	0.0909739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top