|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=transcript|length=950bp
TGATTTATCATAAACGTGaagatgtttatatacttcaACCATATCGCCAA
TTTTACGTCTGATTTTCAGTGTCGGAAGGTTAATCTTACGGAGACGGTAT
TTGTAAGATTTGTTCTTGCACCCTCTAACCAGTCTCGTGGCCCTTCGCTG
AACACTCTCGATGACATAGATGTGTTTGATGAGTCGTGGAGACCAAACGG
CTTCAGCGTACTCAAGATGAATCAGACAAACGCTATAAAAAGAGTGCAGA
GTATTTCTGGTGaaagaaagtcaaaactttTGCTGATCAGACCAACGATT
GAGttagttttcttgattttaccaaaGATGTGTTCTTCAAAATTCAGTTC
CCCGACGATAATCACTCCGTGATCTTTTTCTTGATCCAGGTGCTCCAGGA
TTAACTCGTCTATGTTGTATTGATGGGCAtgtttgatgttccaaaatttt
cccagtGTTAGCACGTGGCATTTATCTGGGTGGAATCTGAGTAGTCAGTC
CTATGACCATCTTTCCATATTCAGCACTAATTATCTCCTCAACAAGCTTA
GTGTCGTCTGCAAAGAGGTACATATCAGAGCTTGTAACCTCAGGTAGATC
GTTGATATATAACACAAAAAGTAATAGACCAAGAACACTTCCCTGTGGGA
CACCGCTGAGTACTTTACCTTCCTTGGATAGTTTACCATTTACCTTAATA
TACTGATAACGATCCGACAGAAAGGATTTGATCCAGTCTAACGTGTATCC
TTTGATACCGTATGCGTCGAGTTTCTTGATAATGATGAGTAATCTGCGGT
GTGAAACTGTATCGAAGGCCTTGGCAAAGTCGAAATAGATATCCTACGAA
ATAGATAACATTCTAACGTCCTACAAGGACTACAACATTTCAATTTAGAA
AAGCGACCATAAGCCCCGCAATCCTATTTTGAACACTAAACTTATTTCTG Run BLAST on NCBI protein sequence of TCONS_00049418-protein >TCONS_00049418-protein ID=TCONS_00049418-protein|Name=TCONS_00049418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MFIYFNHIANFTSDFQCRKVNLTETVFVRFVLAPSNQSRGPSLNTLDDID
VFDESWRPNGFSVLKMNQTNAIKRVQSISGERKSKLLLIRPTIELVFLIL
PKMCSSKFSSPTIITP Run BLAST on NCBI transcript from alignment at scaffold_158:75882..76831 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at scaffold_158:75882..76831 (Clytia hemisphaerica)
CAGAAATAAGTTTAGTGTTCAAAATAGGATTGCGGGGCTTATGGTCGCTT
TTCTAAATTGAAATGTTGTAGTCCTTGTAGGACGTTAGAATGTTATCTAT
TTCGTAGGATATCTATTTCGACTTTGCCAAGGCCTTCGATACAGTTTCAC
ACCGCAGATTACTCATCATTATCAAGAAACTCGACGCATACGGTATCAAA
GGATACACGTTAGACTGGATCAAATCCTTTCTGTCGGATCGTTATCAGTA
TATTAAGGTAAATGGTAAACTATCCAAGGAAGGTAAAGTACTCAGCGGTG
TCCCACAGGGAAGTGTTCTTGGTCTATTACTTTTTGTGTTATATATCAAC
GATCTACCTGAGGTTACAAGCTCTGATATGTACCTCTTTGCAGACGACAC
TAAGCTTGTTGAGGAGATAATTAGTGCTGAATATGGAAAGATGGTCATAG
GACTGACTACTCAGATTCCACCCAGATAAATGCCACGTGCTAACactggg
aaaattttggaacatcaaacaTGCCCATCAATACAACATAGACGAGTTAA
TCCTGGAGCACCTGGATCAAGAAAAAGATCACGGAGTGATTATCGTCGGG
GAACTGAATTTTGAAGAACACATCtttggtaaaatcaagaaaactaaCTC
AATCGTTGGTCTGATCAGCAaaagttttgactttctttCACCAGAAATAC
TCTGCACTCTTTTTATAGCGTTTGTCTGATTCATCTTGAGTACGCTGAAG
CCGTTTGGTCTCCACGACTCATCAAACACATCTATGTCATCGAGAGTGTT
CAGCGAAGGGCCACGAGACTGGTTAGAGGGTGCAAGAACAAATCTTACAA
ATACCGTCTCCGTAAGATTAACCTTCCGACACTGAAAATCAGACGTAAAA
TTGGCGATATGGTtgaagtatataaacatcttCACGTTTATGATAAATCA
Coding sequence (CDS) from alignment at scaffold_158:75882..76831 >TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_158:75882..76831 (Clytia hemisphaerica)
TCACGGAGTGATTATCGTCGGGGAACTGAATTTTGAAGAACACATCtttg
gtaaaatcaagaaaactaaCTCAATCGTTGGTCTGATCAGCAaaagtttt
gactttctttCACCAGAAATACTCTGCACTCTTTTTATAGCGTTTGTCTG
ATTCATCTTGAGTACGCTGAAGCCGTTTGGTCTCCACGACTCATCAAACA
CATCTATGTCATCGAGAGTGTTCAGCGAAGGGCCACGAGACTGGTTAGAG
GGTGCAAGAACAAATCTTACAAATACCGTCTCCGTAAGATTAACCTTCCG
ACACTGAAAATCAGACGTAAAATTGGCGATATGGTtgaagtatataaaca
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049418-exon-scaffold_158-1491911889:75882..76831 | TCONS_00049418-exon-scaffold_158-1491911889:75882..76831 | Clytia hemisphaerica | exon |
| TCONS_00049418-exon-scaffold_158-1510915933:75882..76831 | TCONS_00049418-exon-scaffold_158-1510915933:75882..76831 | Clytia hemisphaerica | exon |
| TCONS_00049418-exon-scaffold_158-1575043694:75882..76831 | TCONS_00049418-exon-scaffold_158-1575043694:75882..76831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_158 | supercontig | scaffold_158:75882..76831 . |
Blast
The following BLAST results are available for this feature:
|
