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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004857 ID=TCONS_00004857|Name=TCONS_00004857|organism=Clytia hemisphaerica|type=transcript|length=1727bp
AATTTatgattaaatatttttttcaacaatttttgatttttgaataattC
AACTAATTTACAATCAAGCTTATGAATGTTGGCAGTTANTTTTGAATAAT
TCAACTAATTTGACTAATTTACAATCAAGCTTATGAATGTTGGCACTTTT
TAGAAATTCAGAACATTCCGAAAGCAATTCCCCTCCCCTTGTCTACAAAA
CTGAAGCATTGTCAATCTTTCACCAGAACTGACTCCAATAGCTTTGTAGA
CAGGGGAAGGTTTCTCCAGTGCCATTTAagaaaagtgccaaaatattatg
aacaatattgtatgtatttttttcccattaaatttattgatttttttcaa
tacaaaattattattttttagttcCCTTGTGGAGAAATAGCTTAATGATA
TTTGAACAATGAATTTAAAGTTTCAAAGATTTGTAACATTGACAATAATT
CTTGTTTTTGTGAACGAAACCTTCTCTCATGTTTTCCAACTCGACCAATG
TCGTAATTTTGATGCAGAGTTTTCAAAGATCACTTATGGTCAACGATTGA
TTGGTGATATTTTCCAAACTTTGAGTTTACTTTCTTTGAGAGAGTGTCTG
ACAAAGTGTTTGTATTATTTGGGATGTCTGTCAGTCAATTACAATAGGGA
TGATTCAACTTGTGAGATTTTGGGAAACACTATCCAGAGAAATATTTCAG
ATCAAACAGATATTTTATCAGGCGATGAAGAATGGAACCATTTCGAAACG
AATTATGACAGAAAAGAGATTGGGACTTCGTGTTTTCGAAACAATCCTTG
TGGATCGGACAAGCGATGTGTCGATAATTGTAATGGTTTAAGCGTTTGTG
TTCCTCTTACAGTTGaatcTCTCCACAATCACATCCAAAATCCAACCAGT
TCATCTGTTTACAACAGTGACACACCAGCTCCTAATGCATTCGATGGCAA
CGAAGCAACATTGTTCCACTCTGGAGTCACAGGTTCTGCTCAGATGACAA
CACATTGGCTTAGGGCAGAATTTCAAACGcgtgtttttattgattatgTC
GTTTTTGTCAATCGATTGCATTTTTACGAACGGGAACACAATATTGACCT
CAAAACCGTTCTTTCCATTAACGGCCAAGAAGTTATGACATGGTTTGGAA
ATACTGGTAAAATTAAATTGCGTAGAGCCTTTTTATGTATGCGCCAAGCT
GATGGAATTTACATTGAACAACCACAAGCTGTATCGGCAAAAACCATTCA
TATAGAAGAAATTTGGGTATACGGTGCAGTATTGTAATGCTTACCTGTTT
aaaagtacacgcttttttataagaatattcatgatgaaattggccaaaaa
attaaaaatatggtAAAGAACACTGGAATTttgcaactgaacctaagaat
gccatttttagagtattCTACCATTAAATTACCAAATATTCCCCAGCAAC
GCTAAAGGTTCCATTTTTGCTTGAGCTGTGTATTACATACTAGATTTTAA
CTGAGTTTGGATCCAAACCttagaataccctaagaatatttcaggatgat
ttttcaCAAAtgataagaatattcatgatggaTTGGAAAAAcacgattct
tataaaaagaaaattatttatagAGACCTCCACGATTTAATAAATGAACA
CCCAGCACATTTAATAGCTTTTTATCATGTAAATTTTTCATAGGTATGGC
ATTTTTAACttaatttatttattgttg Run BLAST on NCBI protein sequence of TCONS_00004857-protein >TCONS_00004857-protein ID=TCONS_00004857-protein|Name=TCONS_00004857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MNLKFQRFVTLTIILVFVNETFSHVFQLDQCRNFDAEFSKITYGQRLIGD
IFQTLSLLSLRECLTKCLYYLGCLSVNYNRDDSTCEILGNTIQRNISDQT
DILSGDEEWNHFETNYDRKEIGTSCFRNNPCGSDKRCVDNCNGLSVCVPL
TVESLHNHIQNPTSSSVYNSDTPAPNAFDGNEATLFHSGVTGSAQMTTHW
LRAEFQTRVFIDYVVFVNRLHFYEREHNIDLKTVLSINGQEVMTWFGNTG
KIKLRRAFLCMRQADGIYIEQPQAVSAKTIHIEEIWVYGAVL Run BLAST on NCBI transcript from alignment at sc0000049:248933..252104+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004857 ID=TCONS_00004857|Name=TCONS_00004857|organism=Clytia hemisphaerica|type=transcript|length=3172bp|location=Sequence derived from alignment at sc0000049:248933..252104+ (Clytia hemisphaerica)
AATTTatgattaaatatttttttcaacaatttttgatttttgaataattC
AACTAATTTACAATCAAGCTTATGAATGTTGGCAGTTANTTTTGAATAAT
TCAACTAATTTGACTAATTTACAATCAAGCTTATGAATGTTGGCACTTTT
TAGAAATTCAGAACATTCCGAAAGCAATTCCCCTCCCCTTGTCTACAAAA
CTGAAGCATTGTCAATCTTTCACCAGAACTGACTCCAATAGCTTTGTAGA
CAGGGGAAGGTTTCTCCAGTGCCATTTAagaaaagtgccaaaatattatg
aacaatattgtatgtatttttttcccattaaatttattgatttttttcaa
tacaaaattattattttttagttcCCTTGTGGAGAAATAGCTTAATGATA
TTTGAACAATGAATTTAAAGTTTCAAAGATTTGTAACATTGACAATAATT
CTTGTTTTTGTGAACGAAACCTTCTCTCATGTTTTCCAACTCGACCAATG
TCGTAATTTTGATGCAGAGTTTTCAAAGATCACTTATGGTCAACGATTGA
TTGGTGATATTTTCCAAACTTTGAGTTTACTTTCTTTGAGAGAGTGTCTG
ACAAAGTGTTTGTATTATTTGGGATGTCTGTCAGTCAATTACAATAGGGA
TGATTCAACTTGTGAGATTTTGGGAAACACTATCCAGAGAAATATTTCAG
ATCAAACAGATATTTTATCAGGCGATGAAGAATGGAACCATTTCGAAACG
AATTATGACAGAAAAGAGGTAAGAACAGGGGTGTTCTTCTCAGTGACTGT
TGAAGTTTTGAAATCCACCGGGGTGTGActatgaaaaaatctttttctcg
gtggtttttttttgaaatctcaaAAACTCACTATGATGGAAATTTTTAAC
TCGAATTTCACCTGGctggaaaaaatttattttatggtGAGTCAGGCTTT
CCTAGAATTCAATAATATGTATATTTTTTCCTTTGAATGAGTTGCCTTAA
TCATAATTTTTGACCGTGGTAAAATAATAGATTTCAAAGTTTAACCAGGG
TGGAATTTTAATAAACTTTTGACAGGGTTCACTCATTATCCCACCTCTCA
TAATTAGGCCATTTCAGGTGATTTTTTACAAAGAATTATTCACCGGGGCG
GACCTCACCAGGTCATATAGGGGGTGTAAAAATGTTATACATCTTTCTGT
TGCAAGTTGTAGATCTGACCGGGATAATCTTGTTAACCCGAATATTCCCA
TAACTCAAAAATTATTTGGatggagttttatattttttggtcTCTTTTTA
TTCTAGATTGGGACTTCGTGTTTTCGAAACAATCCTTGTGGATCGGACAA
GCGATGTGTCGATAATTGTAATGGTTTAAGCGTTTGTGTTCCTCTTACAG
TTGGTAAGTCATACAATCCTATCATTCATACTTCGGAGGCTGAAAGGACA
AAAAAGCTGCTGAAATTCAAAGAAGGTTTTACATTGTAAAGGCagcaaat
tttttgatttctttatcgGTCATGGATAGGCCGGtgtccttaactcaaac
aaaaaTCTCTAGGTAGCGTTGAAAGGAGAAAGAAGTATTGACTAGGAAAG
ATATAAACACCTTTTAACTGCAAAAGACATTTAGACATTACACAGGGAAA
ATCCTCATACTCTCTGATGTATAAGTACAAGTTGCACAAGAATGGCGGAA
GATTTTTGTTTACAAGAACGATTTTGCATAGTGAATACACGTGATTATAT
ACAtcgaactttttattttcagaatcTCTCCACAATCACATCCAAAATCC
AACCAGTTCATCTGTTTACAACAGTGACACACCAGCTCCTAATGCATTCG
ATGGCAACGAAGCAACATTGTTCCACTCTGGAGTCACAGGTTCTGCTCAG
ATGACAACACATTGGCTTAGGGTCTGTTTCCTTTTTGGTGTTTGTTACTT
ATGCTGAATTTCCACTTGGAAATATGGGTGTTAGAAAGCGAGCTTATTAA
CGATTCTTTAAAACCATAAGGTATTATTTAGTATCAAGGCATCATTAAGA
TGCTCCAAATCAGTTAGACATTAGAGTATCTTTTAACCAATGTGGGTATA
GAAAGACTCTAACTACTACCAGCCTAAGCGCTATCATTTTTTATAGGATT
CGTATTTTCAGTAAatttttctacgtcactgcagtaaacTGTAAACCACT
TCTGTCAATTGAGATTAAGTTTTACGAAGGCAACGATGATGGAaaacagt
tcttgaattcccaagtCAATGAAACgatgacaaaaaaacaatttttttca
tcgtCTTTCGCGAAATCTGCACATACATTTTTGCGTTTtgaattgaatag
aaaatagtatgTGATGGATGCACGAGTCCTATAAAATGGGCCAATTATCC
TTAAACATAAGAGGATTTCATTATtaatttaaaacacttaaaatttttta
tcttcacaGGCAGAATTTCAAACGcgtgtttttattgattatgTCGTTTT
TGTCAATCGATTGCATTTTTACGAACGGGAACACAATATTGACCTCAAAA
CCGTTCTTTCCATTAACGGCCAAGAAGTTATGACATGGTTTGGAAATACT
GGTAAAATTAAATTGCGTAGAGCCTTTTTATGTATGCGCCAAGCTGATGG
AATTTACATTGAACAACCACAAGCTGTATCGGCAAAAACCATTCATATAG
AAGAAATTTGGGTATACGGTGCAGTATTGTAATGCTTACCTGTTTaaaag
tacacgcttttttataagaatattcatgatgaaattggccaaaaaattaa
aaatatggtAAAGAACACTGGAATTttgcaactgaacctaagaatgccat
ttttagagtattCTACCATTAAATTACCAAATATTCCCCAGCAACGCTAA
AGGTTCCATTTTTGCTTGAGCTGTGTATTACATACTAGATTTTAACTGAG
TTTGGATCCAAACCttagaataccctaagaatatttcaggatgatttttc
aCAAAtgataagaatattcatgatggaTTGGAAAAAcacgattcttataa
aaagaaaattatttatagAGACCTCCACGATTTAATAAATGAACACCCAG
CACATTTAATAGCTTTTTATCATGTAAATTTTTCATAGGTATGGCATTTT
TAACttaatttatttattgttg Coding sequence (CDS) from alignment at sc0000049:248933..252104+ >TCONS_00004857 ID=TCONS_00004857|Name=TCONS_00004857|organism=Clytia hemisphaerica|type=CDS|length=3516bp|location=Sequence derived from alignment at sc0000049:248933..252104+ (Clytia hemisphaerica)
ATGAATTTAAAGTTTCAAAGATTTGTAACATTGACAATAATTCTTGTTTT
TGTGAACGAAACCTTCTCTCATGTTTTCCAACTCGACCAATGTCGTAATT
TTGATGCAGAGTTTTCAAAGATCACTTATGGTCAACGATTGATTGGTGAT
ATTTTCCAAACTTTGAGTTTACTTTCTTTGAGAGAGTGTCTGACAAAGTG
TTTGTATTATTTGGGATGTCTGTCAGTCAATTACAATAGGGATGATTCAA
CTTGTGAGATTTTGGGAAACACTATCCAGAGAAATATTTCAGATCAAACA
GATATTTTATCAGGCGATGAAGAATGGAACCATTTCGAAACGAATTATGA
CAGAAAAGAGATTGGGACTTCGTGTTTTCGAAACAATCCTTGTGGATCGG
ACAAGCGATGTGTCGATAATTGTAATGGTTTAAGCGTTTGTGTTCCTCTT
ACAGTTGaatcTCTCCACAATCACATCCAAAATCCAACCAGTTCATCTGT
TTACAACAGTGACACACCAGCTCCTAATGCATTCGATGGCAACGAAGCAA
CATTGTTCCACTCTGGAGTCACAGGTTCTGCTCAGATGACAACACATTGG
CTTAGGGCAGAATTTCAAACGcgtgtttttattgattatgTCGTTTTTGT
CAATCGATTGCATTTTTACGAACGGGAACACAATATTGACCTCAAAACCG
TTCTTTCCATTAACGGCCAAGAAGTTATGACATGGTTTGGAAATACTGGT
AAAATTAAATTGCGTAGAGCCTTTTTATGTATGCGCCAAGCTGATGGAAT
TTACATTGAACAACCACAAGCTGTATCGGCAAAAACCATTCATATAGAAG
AAATTTGGGTATACGGTGCAGTATTGTAAATGAATTTAAAGTTTCAAAGA
TTTGTAACATTGACAATAATTCTTGTTTTTGTGAACGAAACCTTCTCTCA
TGTTTTCCAACTCGACCAATGTCGTAATTTTGATGCAGAGTTTTCAAAGA
TCACTTATGGTCAACGATTGATTGGTGATATTTTCCAAACTTTGAGTTTA
CTTTCTTTGAGAGAGTGTCTGACAAAGTGTTTGTATTATTTGGGATGTCT
GTCAGTCAATTACAATAGGGATGATTCAACTTGTGAGATTTTGGGAAACA
CTATCCAGAGAAATATTTCAGATCAAACAGATATTTTATCAGGCGATGAA
GAATGGAACCATTTCGAAACGAATTATGACAGAAAAGAGATTGGGACTTC
GTGTTTTCGAAACAATCCTTGTGGATCGGACAAGCGATGTGTCGATAATT
GTAATGGTTTAAGCGTTTGTGTTCCTCTTACAGTTGaatcTCTCCACAAT
CACATCCAAAATCCAACCAGTTCATCTGTTTACAACAGTGACACACCAGC
TCCTAATGCATTCGATGGCAACGAAGCAACATTGTTCCACTCTGGAGTCA
CAGGTTCTGCTCAGATGACAACACATTGGCTTAGGGCAGAATTTCAAACG
cgtgtttttattgattatgTCGTTTTTGTCAATCGATTGCATTTTTACGA
ACGGGAACACAATATTGACCTCAAAACCGTTCTTTCCATTAACGGCCAAG
AAGTTATGACATGGTTTGGAAATACTGGTAAAATTAAATTGCGTAGAGCC
TTTTTATGTATGCGCCAAGCTGATGGAATTTACATTGAACAACCACAAGC
TGTATCGGCAAAAACCATTCATATAGAAGAAATTTGGGTATACGGTGCAG
TATTGTAAATGAATTTAAAGTTTCAAAGATTTGTAACATTGACAATAATT
CTTGTTTTTGTGAACGAAACCTTCTCTCATGTTTTCCAACTCGACCAATG
TCGTAATTTTGATGCAGAGTTTTCAAAGATCACTTATGGTCAACGATTGA
TTGGTGATATTTTCCAAACTTTGAGTTTACTTTCTTTGAGAGAGTGTCTG
ACAAAGTGTTTGTATTATTTGGGATGTCTGTCAGTCAATTACAATAGGGA
TGATTCAACTTGTGAGATTTTGGGAAACACTATCCAGAGAAATATTTCAG
ATCAAACAGATATTTTATCAGGCGATGAAGAATGGAACCATTTCGAAACG
AATTATGACAGAAAAGAGATTGGGACTTCGTGTTTTCGAAACAATCCTTG
TGGATCGGACAAGCGATGTGTCGATAATTGTAATGGTTTAAGCGTTTGTG
TTCCTCTTACAGTTGaatcTCTCCACAATCACATCCAAAATCCAACCAGT
TCATCTGTTTACAACAGTGACACACCAGCTCCTAATGCATTCGATGGCAA
CGAAGCAACATTGTTCCACTCTGGAGTCACAGGTTCTGCTCAGATGACAA
CACATTGGCTTAGGGCAGAATTTCAAACGcgtgtttttattgattatgTC
GTTTTTGTCAATCGATTGCATTTTTACGAACGGGAACACAATATTGACCT
CAAAACCGTTCTTTCCATTAACGGCCAAGAAGTTATGACATGGTTTGGAA
ATACTGGTAAAATTAAATTGCGTAGAGCCTTTTTATGTATGCGCCAAGCT
GATGGAATTTACATTGAACAACCACAAGCTGTATCGGCAAAAACCATTCA
TATAGAAGAAATTTGGGTATACGGTGCAGTATTGTAAATGAATTTAAAGT
TTCAAAGATTTGTAACATTGACAATAATTCTTGTTTTTGTGAACGAAACC
TTCTCTCATGTTTTCCAACTCGACCAATGTCGTAATTTTGATGCAGAGTT
TTCAAAGATCACTTATGGTCAACGATTGATTGGTGATATTTTCCAAACTT
TGAGTTTACTTTCTTTGAGAGAGTGTCTGACAAAGTGTTTGTATTATTTG
GGATGTCTGTCAGTCAATTACAATAGGGATGATTCAACTTGTGAGATTTT
GGGAAACACTATCCAGAGAAATATTTCAGATCAAACAGATATTTTATCAG
GCGATGAAGAATGGAACCATTTCGAAACGAATTATGACAGAAAAGAGATT
GGGACTTCGTGTTTTCGAAACAATCCTTGTGGATCGGACAAGCGATGTGT
CGATAATTGTAATGGTTTAAGCGTTTGTGTTCCTCTTACAGTTGaatcTC
TCCACAATCACATCCAAAATCCAACCAGTTCATCTGTTTACAACAGTGAC
ACACCAGCTCCTAATGCATTCGATGGCAACGAAGCAACATTGTTCCACTC
TGGAGTCACAGGTTCTGCTCAGATGACAACACATTGGCTTAGGGCAGAAT
TTCAAACGcgtgtttttattgattatgTCGTTTTTGTCAATCGATTGCAT
TTTTACGAACGGGAACACAATATTGACCTCAAAACCGTTCTTTCCATTAA
CGGCCAAGAAGTTATGACATGGTTTGGAAATACTGGTAAAATTAAATTGC
GTAGAGCCTTTTTATGTATGCGCCAAGCTGATGGAATTTACATTGAACAA
CCACAAGCTGTATCGGCAAAAACCATTCATATAGAAGAAATTTGGGTATA
CGGTGCAGTATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004857-exon-sc0000049-1491911889:248933..249700 | TCONS_00004857-exon-sc0000049-1491911889:248933..249700 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1510915933:248933..249700 | TCONS_00004857-exon-sc0000049-1510915933:248933..249700 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1575043694:248933..249700 | TCONS_00004857-exon-sc0000049-1575043694:248933..249700 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1491911889:250239..250335 | TCONS_00004857-exon-sc0000049-1491911889:250239..250335 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1510915933:250239..250335 | TCONS_00004857-exon-sc0000049-1510915933:250239..250335 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1575043694:250239..250335 | TCONS_00004857-exon-sc0000049-1575043694:250239..250335 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1491911889:250705..250853 | TCONS_00004857-exon-sc0000049-1491911889:250705..250853 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1510915933:250705..250853 | TCONS_00004857-exon-sc0000049-1510915933:250705..250853 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1575043694:250705..250853 | TCONS_00004857-exon-sc0000049-1575043694:250705..250853 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1491911889:251392..252104 | TCONS_00004857-exon-sc0000049-1491911889:251392..252104 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1510915933:251392..252104 | TCONS_00004857-exon-sc0000049-1510915933:251392..252104 | Clytia hemisphaerica | exon |
| TCONS_00004857-exon-sc0000049-1575043694:251392..252104 | TCONS_00004857-exon-sc0000049-1575043694:251392..252104 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:248933..252104 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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