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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049559 ID=TCONS_00049559|Name=TCONS_00049559|organism=Clytia hemisphaerica|type=transcript|length=1499bp
CTATAAAGCAAAGGAAACAAAAATGAGTTGGTTAGCTTGGTCCAAGAAAA
TATTCCTCCTTATACAATTAATGTTACTGGTTATCAAAGAAACAGAAGCG
AGGGAAACATATTGTCTTCAAAAGACAAGGCTAACCGTCTTTACTGATGC
GGAATATTTGTTTGGTGACAATTATAGTAATATATATGAATACCATTTCC
TTGTGTCGGTTATAAAAACTGTTTTACGAGATCAATGTTACGAAGGAAGA
CTGTACGACCAAGCTAACCGTAAATTCATCAAGATCAATGATGTCGAAGA
CATTCGATCGGACTTCGAGAAACTTTCCCACAATTTTCAACCCATCAAAA
GAGATGAAATGTACAGTTTCGTTGACGAATTCTACGGTGAAATAAATAAT
ACAAATGATTCAAGAGAAATCATCCTTTATTTATATGCAGAATACAACAC
GCTACGTTCTTATATGGAGTTGAAAGTGCTTTCCAAAAATCCAAAGGTTT
CTATTATTATCGGATGCTTGACTTTCTTAAGCTACGGCAGTTTTCCTTTT
CCTGAGCTTGCCTGGTTACCATTTCATCGTTTCATTCTTATCACTATCGC
ATATAATCTTCCCTTACGGTACTTGCAAAATGACGAATTAAAAGTTAAAG
CTTTAGACAAGTTTCACCGAGAACATAATGGTGTTCCCATTTGCTTCCAA
AGTCTTTTAGGACTGCTTAGAAATCCGAACTTCAATCGATTTGAGTATCA
CTCAAACACGCTTCTACCAGACACACATTTCCCAAAGACAATTCAAAATT
TAactatttattttcaatcaaaCTTGGAAAACACACTGGGTAATTCATTC
ATCAAGGAAGACACAGATGCACTTTTTCAACTGATGTTTTTTCTGAAGAA
GAAATTATTGCAACTCGATGGTACAAAGTTTTTCGTCCTTATGGAAGGAG
GAATCAATGCTGCATTAGTGATGCCTTTGTATCAAAAGCTTGGCTTTGAA
GTCGTCCAAGACCTGGCAATTTTGGTCGGAGATTTACCGGGTTTAAAGTA
CGACTTCATAGAAGATATCGGATATTCTGATAGCTTAATCACCGTTTATC
CAGAGGATCTGTTAACAGACAAATCTTTAAAACTCTGGATGAAAGCGATT
ATCGACAAGGTTGAGTCGCATCCACAAAAAGGTGAAATGAAAATAACAAA
CAAGGATTATTGAAAAAAACTTTAAATAACGTTTTGGATATTAATGTACA
ACTTCATTTGAATAATGGAGGATTTCTCATGACGCAGAACAAACGTATGA
AATAAATTACAGTATTTCGTTTAGCATAGTCAATTTTGTAAATAATTTTG
TCAGTTTTCTTTTGCCTAAAAATGCTCTTTAAATGTTCTCATTCTGAATC
ATATTGTGAATATTTGTGTTATTTCCTATGAAATTGAGTGTTTTCAGAGT
TCGTAATAAAATGTTCATATCTATGTTCTTAAGATTTTAGCCATCGAAG Run BLAST on NCBI protein sequence of TCONS_00049559-protein >TCONS_00049559-protein ID=TCONS_00049559-protein|Name=TCONS_00049559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
YKAKETKMSWLAWSKKIFLLIQLMLLVIKETEARETYCLQKTRLTVFTDA
EYLFGDNYSNIYEYHFLVSVIKTVLRDQCYEGRLYDQANRKFIKINDVED
IRSDFEKLSHNFQPIKRDEMYSFVDEFYGEINNTNDSREIILYLYAEYNT
LRSYMELKVLSKNPKVSIIIGCLTFLSYGSFPFPELAWLPFHRFILITIA
YNLPLRYLQNDELKVKALDKFHREHNGVPICFQSLLGLLRNPNFNRFEYH
SNTLLPDTHFPKTIQNLTIYFQSNLENTLGNSFIKEDTDALFQLMFFLKK
KLLQLDGTKFFVLMEGGINAALVMPLYQKLGFEVVQDLAILVGDLPGLKY
DFIEDIGYSDSLITVYPEDLLTDKSLKLWMKAIIDKVESHPQKGEMKITN
KDY Run BLAST on NCBI transcript from alignment at scaffold_160:146001..147499 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049559 ID=TCONS_00049559|Name=TCONS_00049559|organism=Clytia hemisphaerica|type=transcript|length=1499bp|location=Sequence derived from alignment at scaffold_160:146001..147499 (Clytia hemisphaerica)
CTTCGATGGCTAAAATCTTAAGAACATAGATATGAACATTTTATTACGAA
CTCTGAAAACACTCAATTTCATAGGAAATAACACAAATATTCACAATATG
ATTCAGAATGAGAACATTTAAAGAGCATTTTTAGGCAAAAGAAAACTGAC
AAAATTATTTACAAAATTGACTATGCTAAACGAAATACTGTAATTTATTT
CATACGTTTGTTCTGCGTCATGAGAAATCCTCCATTATTCAAATGAAGTT
GTACATTAATATCCAAAACGTTATTTAAAGTTTTTTTCAATAATCCTTGT
TTGTTATTTTCATTTCACCTTTTTGTGGATGCGACTCAACCTTGTCGATA
ATCGCTTTCATCCAGAGTTTTAAAGATTTGTCTGTTAACAGATCCTCTGG
ATAAACGGTGATTAAGCTATCAGAATATCCGATATCTTCTATGAAGTCGT
ACTTTAAACCCGGTAAATCTCCGACCAAAATTGCCAGGTCTTGGACGACT
TCAAAGCCAAGCTTTTGATACAAAGGCATCACTAATGCAGCATTGATTCC
TCCTTCCATAAGGACGAAAAACTTTGTACCATCGAGTTGCAATAATTTCT
TCTTCAGAAAAAACATCAGTTGAAAAAGTGCATCTGTGTCTTCCTTGATG
AATGAATTACCCAGTGTGTTTTCCAAGtttgattgaaaataaatagtTAA
ATTTTGAATTGTCTTTGGGAAATGTGTGTCTGGTAGAAGCGTGTTTGAGT
GATACTCAAATCGATTGAAGTTCGGATTTCTAAGCAGTCCTAAAAGACTT
TGGAAGCAAATGGGAACACCATTATGTTCTCGGTGAAACTTGTCTAAAGC
TTTAACTTTTAATTCGTCATTTTGCAAGTACCGTAAGGGAAGATTATATG
CGATAGTGATAAGAATGAAACGATGAAATGGTAACCAGGCAAGCTCAGGA
AAAGGAAAACTGCCGTAGCTTAAGAAAGTCAAGCATCCGATAATAATAGA
AACCTTTGGATTTTTGGAAAGCACTTTCAACTCCATATAAGAACGTAGCG
TGTTGTATTCTGCATATAAATAAAGGATGATTTCTCTTGAATCATTTGTA
TTATTTATTTCACCGTAGAATTCGTCAACGAAACTGTACATTTCATCTCT
TTTGATGGGTTGAAAATTGTGGGAAAGTTTCTCGAAGTCCGATCGAATGT
CTTCGACATCATTGATCTTGATGAATTTACGGTTAGCTTGGTCGTACAGT
CTTCCTTCGTAACATTGATCTCGTAAAACAGTTTTTATAACCGACACAAG
GAAATGGTATTCATATATATTACTATAATTGTCACCAAACAAATATTCCG
CATCAGTAAAGACGGTTAGCCTTGTCTTTTGAAGACAATATGTTTCCCTC
GCTTCTGTTTCTTTGATAACCAGTAACATTAATTGTATAAGGAGGAATAT
TTTCTTGGACCAAGCTAACCAACTCATTTTTGTTTCCTTTGCTTTATAG Coding sequence (CDS) from alignment at scaffold_160:146001..147499 >TCONS_00049559 ID=TCONS_00049559|Name=TCONS_00049559|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_160:146001..147499 (Clytia hemisphaerica)
TCAATAATCCTTGTTTGTTATTTTCATTTCACCTTTTTGTGGATGCGACT
CAACCTTGTCGATAATCGCTTTCATCCAGAGTTTTAAAGATTTGTCTGTT
AACAGATCCTCTGGATAAACGGTGATTAAGCTATCAGAATATCCGATATC
TTCTATGAAGTCGTACTTTAAACCCGGTAAATCTCCGACCAAAATTGCCA
GGTCTTGGACGACTTCAAAGCCAAGCTTTTGATACAAAGGCATCACTAAT
GCAGCATTGATTCCTCCTTCCATAAGGACGAAAAACTTTGTACCATCGAG
TTGCAATAATTTCTTCTTCAGAAAAAACATCAGTTGAAAAAGTGCATCTG
TGTCTTCCTTGATGAATGAATTACCCAGTGTGTTTTCCAAGtttgattga
aaataaatagtTAAATTTTGAATTGTCTTTGGGAAATGTGTGTCTGGTAG
AAGCGTGTTTGAGTGATACTCAAATCGATTGAAGTTCGGATTTCTAAGCA
GTCCTAAAAGACTTTGGAAGCAAATGGGAACACCATTATGTTCTCGGTGA
AACTTGTCTAAAGCTTTAACTTTTAATTCGTCATTTTGCAAGTACCGTAA
GGGAAGATTATATGCGATAGTGATAAGAATGAAACGATGAAATGGTAACC
AGGCAAGCTCAGGAAAAGGAAAACTGCCGTAGCTTAAGAAAGTCAAGCAT
CCGATAATAATAGAAACCTTTGGATTTTTGGAAAGCACTTTCAACTCCAT
ATAAGAACGTAGCGTGTTGTATTCTGCATATAAATAAAGGATGATTTCTC
TTGAATCATTTGTATTATTTATTTCACCGTAGAATTCGTCAACGAAACTG
TACATTTCATCTCTTTTGATGGGTTGAAAATTGTGGGAAAGTTTCTCGAA
GTCCGATCGAATGTCTTCGACATCATTGATCTTGATGAATTTACGGTTAG
CTTGGTCGTACAGTCTTCCTTCGTAACATTGATCTCGTAAAACAGTTTTT
ATAACCGACACAAGGAAATGGTATTCATATATATTACTATAATTGTCACC
AAACAAATATTCCGCATCAGTAAAGACGGTTAGCCTTGTCTTTTGAAGAC
AATATGTTTCCCTCGCTTCTGTTTCTTTGATAACCAGTAACATTAATTGT
ATAAGGAGGAATATTTTCTTGGACCAAGCTAACCAACTCATTTTTGTTTC
CTTTGCTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049559-exon-scaffold_160-1491911889:146001..147499 | TCONS_00049559-exon-scaffold_160-1491911889:146001..147499 | Clytia hemisphaerica | exon |
| TCONS_00049559-exon-scaffold_160-1510915933:146001..147499 | TCONS_00049559-exon-scaffold_160-1510915933:146001..147499 | Clytia hemisphaerica | exon |
| TCONS_00049559-exon-scaffold_160-1575043694:146001..147499 | TCONS_00049559-exon-scaffold_160-1575043694:146001..147499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:146001..147499 . |
Blast
The following BLAST results are available for this feature:
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