|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049582 ID=TCONS_00049582|Name=TCONS_00049582|organism=Clytia hemisphaerica|type=transcript|length=2959bpRun BLAST on NCBI transcript from alignment at scaffold_161:3093..35674- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049582 ID=TCONS_00049582|Name=TCONS_00049582|organism=Clytia hemisphaerica|type=transcript|length=32582bp|location=Sequence derived from alignment at scaffold_161:3093..35674- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049582 vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 3.131e-51 Identity = 189/748 (25.27%), Postives = 321/748 (42.91%), Query Frame = 2
Query: 764 GDPSLIRYGFKCRTSNVTAFYGPFYQDNYDVLAAMTHIYPITFMS-QSSSKENDDRLRYQFGKSKNQIHKYTLQTNPSTLFRNQVILDIILKFGWNFVAVFHSSFYIGESTSDVIFLLDK--SGICIP-STRLKGGIEGNTDENIKARIIELRENHPTLRVLLLLTDVADTRSVLKAIKELDLQNHFTLLFADRGVNDIEVVRGYEDIAVGAITIEPVNFHEKHLEQLADFEQWML-KANPTNTRNLYFHWYWEQTFECELNSHILDRMLTPDQRGTYQKKCTGDEQFQIGKGVYPDRNLFRGAMDTVEAIVFTLYRMELISTQSCEWVTSNKDLINIWSKDGCDKCPWNTTLCFNRFFEGVFPSINMLNYQRLLPDI---------GWSLKYNHPRDIPNASYEISNFIFTNGRYQSVPIGNWTIKVPAHETKVYFPTDVLKMNKPHMVIDTDRIFWRNGSAPEGKCALDCAPGYTRLYYLSKREVRK--CCWKCEKCDTHDIVV-ENKCHRCDRFQTPNIIKNVCEPLPIYHITLFSNSFATVLGIASMXXXXXXXXXXXXXXYNNNKHVIKAAGRELSYCMXXXXXXXXXXXXXXXVYPSKSICIARFALPPMAQVVVYSSFLLKNIRLYRIFERYDRKVTQPYLISPKSQVIILLIIMSFQIGFAFIWTYDGLPDVT------RVLTSNEKQVMLMCTKTHKVRFVLNXXXXXXXXXXXXXXXXKIRGLPKTYNETKFYIFTAF 2938
GDP + + ++ G ++A + ++ I +S S++ E D RY F + P ++ Q ++DI+ GWN+V+ S GES + + + G+CI S ++ E I R++E P R +++ + D R +L+A K+L+ HF + +D + I V E+IA GA+TI P + F+++ + N RN++F +WE+ F C+L SH +R ++ KKCTG E+ Y + +D V ++ + L+ M +KDL CP LC P ++ ++ + LL I G + +N D P Y+I + TN + IG+WT N+ H+ ++ + R + P C+L C PG K+ V+ CCW CE+C+ ++ V E C C Q PN+ + C+ +PI + S + +A + I + YN+ +++A+GRELSY +L+GIF + T L + P IC R + Y++ L K R++RIFE+ + VT P ISP SQ++I ++S Q+ F+W P + R L + + +L C + + + +I ++ C +Y K RG+P+T+NE K FT +
Sbjct: 136 GDPPIFT-----KPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFS----------RVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLET----PNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKR------ASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSH--------GKRNSHIKKCTGLERIARDSS-YEQEGKVQFVIDAVYSMAYALHNM-------------HKDL-----------CPGYIGLC---------PRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAP-GRYDIFQYQITNKSTEYKVIGHWT-------------------NQLHLKVEDMQWAHREHTHPASVCSLPCKPGE------RKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTP-IVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVLKC-DISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMY 788 The following BLAST results are available for this feature:
BLAST of TCONS_00049582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.