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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053003 ID=TCONS_00053003|Name=TCONS_00053003|organism=Clytia hemisphaerica|type=transcript|length=1690bp
CCCAAATCTTAACTAACTATTATATGCAAAGAAGCTTTAAGATTCTTAGT
GGTTCTTATCAAGTTTGGGTGTTAAGAATCTTAAAAACACGTAAATTTCT
GGTTATGattatttttcataagaagGAGTCTTTAGACTCAAGGAGAGCAA
TCTCTTAGGATAGTATTTACGAAGCAGTTTTTGCTCAGCTTCGAAATACG
GTTAGTGGTTTCTCTTTTGTGTGTTTGTTATCATTGACTGTATTAATGAA
ATAGTTGATTAATGGGAAGTATTCACGAGGTCATCAGCTGAATGCTGTCA
CTCGAGCAAAGGTGCTTTTGACCCTTATTCAATAAGTATTTGGGGATAGT
AGTGAAATTCCgtcagcgaccgtagtgcagtggtagagcatccgtctacg
gtgcgcaaggttgtgggttcaacccccagccgggtcataccaaagattcc
taaaatggtacttgatgcctctctgattgatgctcagcaattaagagaag
ggtcaagggtaagtggagcaattcctcccctaccttcgggtagatagcta
tcgaaagaggatttttcgggtcgcctccgactgcggttgcAGACTTACTT
TTACTTAAGATCCTGTCAAGATCTTGAATCACTGTAAGGGACAAGAATCT
GATTCAAGACTTACAAAAGAGTCTTGTCAGATCgttaaagatcttgaaag
atcttgGCACGTTCgtagtaagaaactgaaaaaaaataagcaaagcttct
tgataagatcttttcaagaactttacaagaatttttaccaggggatggtt
ttggagtgcaattttttacattcagttttcaaaatcatagagcaatttcg
cagtggggttgaaattataggatattttttccaccggggaggattttttg
gcctatttttccatcGGGGTAGGGggtctaccgggtctgtgacacagggg
tgtcttttTCTATCAAGATTCTATTTTAATCTGCATATCCCGATTGCTAT
TAACCAACCCAGCAGGGGGCACTCAAATTAACAAAATGACCTACCGTTAC
GTGCAGCTCGTAATTGTCCCTATACCAATCTTCCCTAAGTgaactgtaag
ggtcgaaatgggCAAAGATGAGATAAAGTGCCCTACgggtgtaaaatttt
gaaaaatatcaacatctGTTAGCTCGCTTTTCACGCTCACGAAAGACCAT
TTCcatcattaaaatcaaaaagtagtgGTCCAAGtagctctgggtacgag
attgctTATAAAATAGTCAAAGGTTTTCAataaaatgcactgaaagggtt
aacTTTTCGTCCATAGTTACCTAAATCGAAttaaattttgctaaattttc
actgcactgtaagggtccgatttgaAAGGCCTAATTTACGGCCGAAAGTA
CGGTCTTTTCTTAAGCGAGTGCCCCTTTCCGGGGTAACCAGTGTGCAGTG
GCATCTGGTTGGTAAGAATCTCAGTGAATTGAGAATATTGACAAGGGATC
AATCATCTTCTCTTTAGCATGTGTGATTTCTCACACTTCATAATGCGACT
TTTCTTGCGTCTTTTGTAACGGCATGTATGTTGCACTATCATCTGAAAAA
GTTTGTAATTCTTCGTAATTTGAAGGTGCTTGAGTTCTTGTATCGATTCT
ATTGGTTTGGAAGCCTACTGGTGCAGCAACTTCGTAATcc Run BLAST on NCBI transcript from alignment at scaffold_223:105047..107089+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053003 ID=TCONS_00053003|Name=TCONS_00053003|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at scaffold_223:105047..107089+ (Clytia hemisphaerica)
CCCAAATCTTAACTAACTATTATATGCAAAGAAGCTTTAAGATTCTTAGT
GGTTCTTATCAAGTTTGGGTGTTAAGAATCTTAAAAACACGTAAATTTCT
GGTTATGattatttttcataagaagGAGTCTTTAGACTCAAGGAGAGCAA
TCTCTTAGGATAGTATTTACGAAGCAGTTTTTGCTCAGCTTCGAAATACG
GTTAGTGGTTTCTCTTTTGTGTGTTTGTTATCATTGACTGTATTAATGAA
ATAGTTGATTAATGGGAAGTATTCACGAGGTCATCAGCTGAATGCTGTCA
CTCGAGCAAAGGTGCTTTTGACCCTTATTCAATAAGTATTTGGGGATAGT
AGTGAAATTCCgtcagcgaccgtagtgcagtggtagagcatccgtctacg
gtgcgcaaggttgtgggttcaacccccagccgggtcataccaaagattcc
taaaatggtacttgatgcctctctgattgatgctcagcaattaagagaag
ggtcaagggtaagtggagcaattcctcccctaccttcgggtagatagcta
tcgaaagaggatttttcgggtcgcctccgactgcggttgcAGACTTACTT
TTACTTAAGATCCTGTCAAGATCTTGAATCACTGTAAGGGACAAGAATCT
GATTCAAGACTTACAAAAGAGTCTTGTCAGATCgttaaagatcttgaaag
atcttgGCACGTTCgtagtaagaaactgaaaaaaaataagcaaagcttct
tgataagatcttttcaagaactttacaagaatttttaccaggggatggtt
ttggagtgcaattttttacattcagttttcaaaatcatagagcaatttcg
cagtggggttgaaattataggatattttttccaccggggaggattttttg
gcctatttttccatcGGGGTAGGGggtctaccgggtctgtgacacagggg
tgtcttttTCTATCAAGATTCTATTTTAATCTGCATATCCCGATTGCTAT
TAACCAACCCAGCAGGGGGCACTCAAATTAACAAAATGACCTACCGTTAC
GTGCAGCTCGTAATTGTCCCTATACCAATCTTCCCTAAGTgaactgtaag
ggtcgaaatgggCAAAGATGAGATAAAGTGCCCTACgggtgtaaaatttt
gaaaaatatcaacatctGTTAGCTCGCTTTTCACGCTCACGAAAGACCAT
TTCcatcattaaaatcaaaaagtagtgGTCCAAGtagctctgggtacgag
attgctTATAAAATAGTCAAAGGTTTTCAataaaatgcactgaaagggtt
aacTTTTCGTCCATAGTTACCTAAATCGAAttaaattttgctaaattttc
actgcactgtaagggtccgatttgaAAGGCCTAATTTACGGCCGAAAGTA
CGGTCTTTTCTTAAGCGAGTGCCCCTTTCCGGGGTAACCAGTGTGCAGTG
GCATCTGGTTGGTAAGAATCTCAGTGAATTGAGAATATTGACAAGGGATC
AATCATCTTCTCTTTAGCATGTGTGATTTCTCACACTTCATAATGCGACT
TTTCTTGCGTCTTTTGTAACGGCATGTATGTTGCACTATCATCTGAAAAA
GTTTGTAATTCTTCGTAATTTGAAGGTGCTTGAGTTCTTGTATCGATTCT
ATTGGTTTGGAAGCCTAATGAAAACAACAAGCAATAAAAGAATTCTTGAT
TGAAAACACTTTGGTAATATTCACCACTGAttgaaaaatcgcgaaaatcg
CCCTCAAggaaaaaataccctgaaatttaaTCATTGTTGCAAAAGTCATT
GAACTTTCTTCTCCAATGGAAACgtcatttttttgtcaaatatctTGCTT
TTTGACCCTCTAGCTGAAAGATTCTCACCGGGCACCGGGTTACTATAAGG
TAGGGTTGTACGAAGCAATGATCAAAATCAAAGAGACGTCGtttaaacat
ttcaaatttgCTTTTAACCTTGAGGATTGGAAAGCAACAGAAAGGATAAC
gtaaattaacgaaaatttacCTGGTGCAGCAACTTCGTAATcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053003-exon-scaffold_223-1491911889:105047..106713 | TCONS_00053003-exon-scaffold_223-1491911889:105047..106713 | Clytia hemisphaerica | exon |
| TCONS_00053003-exon-scaffold_223-1510915933:105047..106713 | TCONS_00053003-exon-scaffold_223-1510915933:105047..106713 | Clytia hemisphaerica | exon |
| TCONS_00053003-exon-scaffold_223-1575043694:105047..106713 | TCONS_00053003-exon-scaffold_223-1575043694:105047..106713 | Clytia hemisphaerica | exon |
| TCONS_00053003-exon-scaffold_223-1491911889:107067..107089 | TCONS_00053003-exon-scaffold_223-1491911889:107067..107089 | Clytia hemisphaerica | exon |
| TCONS_00053003-exon-scaffold_223-1510915933:107067..107089 | TCONS_00053003-exon-scaffold_223-1510915933:107067..107089 | Clytia hemisphaerica | exon |
| TCONS_00053003-exon-scaffold_223-1575043694:107067..107089 | TCONS_00053003-exon-scaffold_223-1575043694:107067..107089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_223 | supercontig | scaffold_223:105047..107089 + |
Blast
The following BLAST results are available for this feature:
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