|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049904 ID=TCONS_00049904|Name=TCONS_00049904|organism=Clytia hemisphaerica|type=transcript|length=1497bp
TATGCTTTGAATgacaaaatatatcaaattaaTGAGTCTTGTGATTAAGA
ATAGATATAAAGAAAATATGGGTTGCAATTTGAAGGTTGCTGCAATTGTG
GTTGCAACATTGACCATTACATTCTCCAGTTTGACTCTGGTCAAATTGTC
TTGTTCAGCTTTTAACCAATACAAGGAAAAGCAACAGATTGATAATGGTG
GTGTGCCGGCACCACGTCATGAACCTTTGGCACTCGAGACAACAACTGCT
GTACCGCCTAAGACACCGGAAAAGGCTTCTGCCTCCAGACGGTATAAGGA
AGTTGTTGAGAAATGGAGCAACAGATCAACAACGTATGTTGAACGTGTAG
TCGGGATCCTTGTCACCATCATGTCAATTGTGACGTCATTCATGGTCTTC
AATGCTGTCTCCGATGACTATGATTACAATGCTCGTAAACGTCATATGAT
CCTTCCTTTCGTTGTCTTCCACTCGCTCATCAATTTCTTCCACGCCGTTG
CAATCCTCTATATCGCAATCACATACCGCGAGTACATGGACGTCCTCCTA
GTCCCAGTCCTCATTTACATTGCAATGGTCTTTGTGACCGTTATTGGGAT
CTCCTTTGTAGGTGCATACCATAAAGCACTTGCGAGAATGGCAAAATCTG
CTGGATTTGGATATGCTCAGATGGAAGATATCCAGAAGGAACCGATTGAT
GAAGAAAAGAAGCCATTGGCTTAAACGATAAGCAATGCAGCAGTTAAAAA
ACCTTATTGGTGAAGGATTCATTTACTATTCATTTACTATTCATGActta
atgttttctacggaaagaccccggtttttgccagtagtggcaaattttat
acaacttttgtttagtttaaatttgccactactggctaaagctggggtat
ttccgtaaaaaacattacgtcgtgaatatcatgaatagaaccATGTGTGA
AATGTATTCAAAAGTCGTTGAGATGTAATGTAAAAATAGAAAGGATTTTT
ATGGAGAATTTAAGTTCATGTAAATTCCATTAAGCGGGTTATGGGAACAA
CTTTATTTTGGTGCATTTATGGTCATCTTGTATGTGTTAGTTTTTAATAA
GCTTCATTTTAATCTCATTGTAGACTTGAAATTTATGTTGTAAATGTTTT
AACACTTTTAGTCTTTTAGTCtagcaaaaatcataatttttatgAAGTTC
ATAACTTTCTTCAGAACTTTTTTCAGAACTTCAGAAATTCTGTCGATTTC
TACTTTTTGTGGAAAATATCAGCTTCAACATTCAAAGGCTCAAACCTTTG
CCCATTGATAATTGATAATAATGGTGTCATGATaagtattttacaatttt
aaacTCTTAGAATAATCTTAAAAGcacatttaaaaatgaaaatcagcaCT
TCTTTGTTTGTGATTAAAATCTATAAAGTAAATTTtgtgttataaaaaaa
atctcaaaatgtcaaaaatattcgTTGATATTCATACATTTGGTCCC Run BLAST on NCBI protein sequence of TCONS_00049904-protein >TCONS_00049904-protein ID=TCONS_00049904-protein|Name=TCONS_00049904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MTKYIKLMSLVIKNRYKENMGCNLKVAAIVVATLTITFSSLTLVKLSCSA
FNQYKEKQQIDNGGVPAPRHEPLALETTTAVPPKTPEKASASRRYKEVVE
KWSNRSTTYVERVVGILVTIMSIVTSFMVFNAVSDDYDYNARKRHMILPF
VVFHSLINFFHAVAILYIAITYREYMDVLLVPVLIYIAMVFVTVIGISFV
GAYHKALARMAKSAGFGYAQMEDIQKEPIDEEKKPLA Run BLAST on NCBI transcript from alignment at scaffold_167:494196..496259+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049904 ID=TCONS_00049904|Name=TCONS_00049904|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at scaffold_167:494196..496259+ (Clytia hemisphaerica)
TATGCTTTGAATgacaaaatatatcaaattaaTGAGTCTTGTGATTAAGG
TATGTTGGTcgcatacacgctttttttttataagaatacactttataaga
atgtccatgatgaaaatggccaaaaaataagaatatcctaagaatatcac
catcatggaattttgctattcaagcaaagaatgtcatttttagagcattc
taaattataaattgccaattacccccaaagTAataagaatgctgtaagaa
tattttaggatgattttcccaaaaaagttaagaatatccatgatgaaatg
gatttacaccattcttataaaaaaaaaagcgtgtaataggCTTTCAGAAA
ATAGGAAGTTTAAAAGAGAGGGGATAGATCAAAACATCTTTGAGACGAAA
TACTAGCAGTTAATAATTTAGAGCATATTTTGATAGTTTCTTGCTCACCG
CGCCGAAGGAAAGGTAAAAAGTAAGTTTCCATGTTCTTTAGAGTAAAGAG
TGTCGATAGTGAAACCATCTGGCAATATGAGCTACAGGGGGTCTTATTTC
CATCCAGGGTTTGTTATCTACAATTAGGGATATAAAATAAACTTTCactt
ttctttaaaattctAGAATAGATATAAAGAAAATATGGGTTGCAATTTGA
AGGTTGCTGCAATTGTGGTTGCAACATTGACCATTACATTCTCCAGTTTG
ACTCTGGTCAAATTGTCTTGTTCAGCTTTTAACCAATACAAGGAAAAGCA
ACAGATTGATAATGGTGGTGTGCCGGCACCACGTCATGAACCTTTGGCAC
TCGAGACAACAACTGCTGTACCGCCTAAGACACCGGAAAAGGCTTCTGCC
TCCAGACGGTATAAGGAAGTTGTTGAGAAATGGAGCAACAGATCAACAAC
GTATGTTGAACGTGTAGTCGGGATCCTTGTCACCATCATGTCAATTGTGA
CGTCATTCATGGTCTTCAATGCTGTCTCCGATGACTATGATTACAATGCT
CGTAAACGTCATATGATCCTTCCTTTCGTTGTCTTCCACTCGCTCATCAA
TTTCTTCCACGCCGTTGCAATCCTCTATATCGCAATCACATACCGCGAGT
ACATGGACGTCCTCCTAGTCCCAGTCCTCATTTACATTGCAATGGTCTTT
GTGACCGTTATTGGGATCTCCTTTGTAGGTGCATACCATAAAGCACTTGC
GAGAATGGCAAAATCTGCTGGATTTGGATATGCTCAGATGGAAGATATCC
AGAAGGAACCGATTGATGAAGAAAAGAAGCCATTGGCTTAAACGATAAGC
AATGCAGCAGTTAAAAAACCTTATTGGTGAAGGATTCATTTACTATTCAT
TTACTATTCATGActtaatgttttctacggaaagaccccggtttttgcca
gtagtggcaaattttatacaacttttgtttagtttaaatttgccactact
ggctaaagctggggtatttccgtaaaaaacattacgtcgtgaatatcatg
aatagaaccATGTGTGAAATGTATTCAAAAGTCGTTGAGATGTAATGTAA
AAATAGAAAGGATTTTTATGGAGAATTTAAGTTCATGTAAATTCCATTAA
GCGGGTTATGGGAACAACTTTATTTTGGTGCATTTATGGTCATCTTGTAT
GTGTTAGTTTTTAATAAGCTTCATTTTAATCTCATTGTAGACTTGAAATT
TATGTTGTAAATGTTTTAACACTTTTAGTCTTTTAGTCtagcaaaaatca
taatttttatgAAGTTCATAACTTTCTTCAGAACTTTTTTCAGAACTTCA
GAAATTCTGTCGATTTCTACTTTTTGTGGAAAATATCAGCTTCAACATTC
AAAGGCTCAAACCTTTGCCCATTGATAATTGATAATAATGGTGTCATGAT
aagtattttacaattttaaacTCTTAGAATAATCTTAAAAGcacatttaa
aaatgaaaatcagcaCTTCTTTGTTTGTGATTAAAATCTATAAAGTAAAT
TTtgtgttataaaaaaaatctcaaaatgtcaaaaatattcgTTGATATTC
ATACATTTGGTCCC Coding sequence (CDS) from alignment at scaffold_167:494196..496259+ >TCONS_00049904 ID=TCONS_00049904|Name=TCONS_00049904|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_167:494196..496259+ (Clytia hemisphaerica)
ATgacaaaatatatcaaattaaTGAGTCTTGTGATTAAGAATAGATATAA
AGAAAATATGGGTTGCAATTTGAAGGTTGCTGCAATTGTGGTTGCAACAT
TGACCATTACATTCTCCAGTTTGACTCTGGTCAAATTGTCTTGTTCAGCT
TTTAACCAATACAAGGAAAAGCAACAGATTGATAATGGTGGTGTGCCGGC
ACCACGTCATGAACCTTTGGCACTCGAGACAACAACTGCTGTACCGCCTA
AGACACCGGAAAAGGCTTCTGCCTCCAGACGGTATAAGGAAGTTGTTGAG
AAATGGAGCAACAGATCAACAACGTATGTTGAACGTGTAGTCGGGATCCT
TGTCACCATCATGTCAATTGTGACGTCATTCATGGTCTTCAATGCTGTCT
CCGATGACTATGATTACAATGCTCGTAAACGTCATATGATCCTTCCTTTC
GTTGTCTTCCACTCGCTCATCAATTTCTTCCACGCCGTTGCAATCCTCTA
TATCGCAATCACATACCGCGAGTACATGGACGTCCTCCTAGTCCCAGTCC
TCATTTACATTGCAATGGTCTTTGTGACCGTTATTGGGATCTCCTTTGTA
GGTGCATACCATAAAGCACTTGCGAGAATGGCAAAATCTGCTGGATTTGG
ATATGCTCAGATGGAAGATATCCAGAAGGAACCGATTGATGAAGAAAAGA
AGCCATTGGCTTAAATgacaaaatatatcaaattaaTGAGTCTTGTGATT
AAGAATAGATATAAAGAAAATATGGGTTGCAATTTGAAGGTTGCTGCAAT
TGTGGTTGCAACATTGACCATTACATTCTCCAGTTTGACTCTGGTCAAAT
TGTCTTGTTCAGCTTTTAACCAATACAAGGAAAAGCAACAGATTGATAAT
GGTGGTGTGCCGGCACCACGTCATGAACCTTTGGCACTCGAGACAACAAC
TGCTGTACCGCCTAAGACACCGGAAAAGGCTTCTGCCTCCAGACGGTATA
AGGAAGTTGTTGAGAAATGGAGCAACAGATCAACAACGTATGTTGAACGT
GTAGTCGGGATCCTTGTCACCATCATGTCAATTGTGACGTCATTCATGGT
CTTCAATGCTGTCTCCGATGACTATGATTACAATGCTCGTAAACGTCATA
TGATCCTTCCTTTCGTTGTCTTCCACTCGCTCATCAATTTCTTCCACGCC
GTTGCAATCCTCTATATCGCAATCACATACCGCGAGTACATGGACGTCCT
CCTAGTCCCAGTCCTCATTTACATTGCAATGGTCTTTGTGACCGTTATTG
GGATCTCCTTTGTAGGTGCATACCATAAAGCACTTGCGAGAATGGCAAAA
TCTGCTGGATTTGGATATGCTCAGATGGAAGATATCCAGAAGGAACCGAT
TGATGAAGAAAAGAAGCCATTGGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049904-exon-scaffold_167-1491911889:494196..494244 | TCONS_00049904-exon-scaffold_167-1491911889:494196..494244 | Clytia hemisphaerica | exon |
| TCONS_00049904-exon-scaffold_167-1510915933:494196..494244 | TCONS_00049904-exon-scaffold_167-1510915933:494196..494244 | Clytia hemisphaerica | exon |
| TCONS_00049904-exon-scaffold_167-1575043694:494196..494244 | TCONS_00049904-exon-scaffold_167-1575043694:494196..494244 | Clytia hemisphaerica | exon |
| TCONS_00049904-exon-scaffold_167-1491911889:494812..496259 | TCONS_00049904-exon-scaffold_167-1491911889:494812..496259 | Clytia hemisphaerica | exon |
| TCONS_00049904-exon-scaffold_167-1510915933:494812..496259 | TCONS_00049904-exon-scaffold_167-1510915933:494812..496259 | Clytia hemisphaerica | exon |
| TCONS_00049904-exon-scaffold_167-1575043694:494812..496259 | TCONS_00049904-exon-scaffold_167-1575043694:494812..496259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:494196..496259 + |
Blast
The following BLAST results are available for this feature:
|
