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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049914 ID=TCONS_00049914|Name=TCONS_00049914|organism=Clytia hemisphaerica|type=transcript|length=4922bpRun BLAST on NCBI protein sequence of TCONS_00049914-protein >TCONS_00049914-protein ID=TCONS_00049914-protein|Name=TCONS_00049914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1441bp MMASKPSELFKSKDGAYVHKWLSHNKLLKADIKFLKKHLRGYDDILETVQRun BLAST on NCBI transcript from alignment at scaffold_167:695044..710049+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049914 ID=TCONS_00049914|Name=TCONS_00049914|organism=Clytia hemisphaerica|type=transcript|length=15006bp|location=Sequence derived from alignment at scaffold_167:695044..710049+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:695044..710049+ >TCONS_00049914 ID=TCONS_00049914|Name=TCONS_00049914|organism=Clytia hemisphaerica|type=CDS|length=43260bp|location=Sequence derived from alignment at scaffold_167:695044..710049+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049914 vs. Swiss-Prot (Human)
Match: PAR12 (Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN=PARP12 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.641e-66 Identity = 193/663 (29.11%), Postives = 312/663 (47.06%), Query Frame = 1
Query: 2461 VFLCVKNIRSCLDY-WSEAGCILGDCGSFHICKESLFDS-KTEHSAISCGKHHDFSSAHNKGIIGKFSLEPLNTRQL-KCLLKN---TLPSVCEDYLKN-----RCTDLQQCENIHICGDFVNGQCRKHSALCSFRHEEALTDNHADEIMKLFHISDTLLLKKSLVY-------------------FKPK--SEEKKKQEFLQQPTFNFLKDEAICVKYLDDVCDNDETCSLLHPKNHTPYLWQYKKPNETSWKSFPINLNVE-IEKAFCDPMQSRYETSSDKMSFIEFA-NDGKMTGSHLNQSIEIRRLSTASKALQLETCKDSYY---TEWKWYWKENCGNWTEYVEKNSLY---------FEKNYHSEI-------AAGVRFTAGQYKYELIFKTMQQQNLNPKYFTKRDVIRRPVYKSSVDDRSSTPQEEDNT--------PWHWPKEVSLEGGRLDVEPSKKQQISQQFKTSLGRNIT---VLDVEEICNAEFYQKYQSKKKILTRKLGENDLNELELYHGTDAAVVDGICKQNFDWRLNGKNATVFGQGSYFAKEASYSLTYTRPDSNKLRYMFLAKVLAGRSTRGDRTLKRPPPISPSDPHTLYDSCVNSISSPSMYIVFERDQCYPQYLITFLLDEENYSLAPNQSEPSLTERCL 4257
V L +R C + S+ GC+ G C H+C+ ++ + K + +C H ++ HN ++ ++ L+ +L + L +N LP +C+ Y K C +QC +HIC F+ G+C K C H+ + ++N E ++ +S L+ + +Y F P+ SE K + T + + + IC+ ++ C + C +H H PY WQ+ + W+ N+E IE+A+C+P R S +F N MT + + RRLSTAS K ++ T+W WYW + G+W EY + +++ EK Y + AA ++F AG++ YEL FK Q+NL Y T + V RRP Y S D T + NT P +W + G + S + Q+ R + V +E + N ++ YQ +K + ++ G ++E +L+HGT A VD IC+QNFDWR+ G + T +G+GSYFA++A+YS Y++ D+ + MFLA+VL G RG+ + R PP + YDSCVNS+S PS++++FE+ Q YP+Y+I + S+PS+T L
Sbjct: 65 VVLAASPLRLCRAHQGSKPGCV-GLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHICQYFLQGEC-KFGTSCKRSHDFSNSENL--EKLEKLGMSSDLVSRLPTIYRNAHDIKNKSSAPSRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVH--FHLPYRWQFL--DRGKWEDLD---NMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYG----ATQARRLSTAS-----SVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDFKAFVQKNL--VYGTTKKVCRRPKYVSPQD---VTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDT-QTHTMFLARVLVGEFVRGNASFVR-PPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYT----------TSSKPSVTPSIL 690 The following BLAST results are available for this feature:
BLAST of TCONS_00049914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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