|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049936 ID=TCONS_00049936|Name=TCONS_00049936|organism=Clytia hemisphaerica|type=transcript|length=4116bpRun BLAST on NCBI protein sequence of TCONS_00049936-protein >TCONS_00049936-protein ID=TCONS_00049936-protein|Name=TCONS_00049936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MPVFAFESAMACLSAEITANNQLFIQEDQKKAWVLNEELYDQLRRQLQELRun BLAST on NCBI transcript from alignment at scaffold_167:1113414..1127243+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049936 ID=TCONS_00049936|Name=TCONS_00049936|organism=Clytia hemisphaerica|type=transcript|length=13830bp|location=Sequence derived from alignment at scaffold_167:1113414..1127243+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1113414..1127243+ >TCONS_00049936 ID=TCONS_00049936|Name=TCONS_00049936|organism=Clytia hemisphaerica|type=CDS|length=43035bp|location=Sequence derived from alignment at scaffold_167:1113414..1127243+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049936 vs. Swiss-Prot (Human)
Match: IQGA1 (Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.231e-46 Identity = 177/721 (24.55%), Postives = 329/721 (45.63%), Query Frame = 1
Query: 268 LQELKVEICKQCKKNFELEKEVKFFDQRIALLINHKISVEEFPDNISYG--------EHRLDTLKDDIQK--------------QCFGNLFFLLQTEPKYIAKLTRSVDTTEIDELLQIVMFSLYGNQYGEREEHLLLKMFELALNMEF-DETDEFGSLMRQNTAISRMMTTYTRRGPGQEYLKDTLQELVEQTNLTGLSED--LNLEVNPVKVYCALHSVVDDERN-------NVTMEKALKDKDVKATINARLVKLENITKYFFDAIIQSLNSVPYGIRWLCKAIYQLCQEKFPHVSIENITGLIGGFFLLRFINPAIVFPHNYMLLNSQPRSQM----RRNFVLIAKLLQ-AISNKGASQILKEVYMKPLEAFVESRQQILQDFLMKLCNVDDFHSNLEMEQY---LSLPKDMNIRITLKEMYRLHDLLCKYQDFLTVEDNEKLTVLLLEL----------GDPSAKYRDQQVENVS---VDINLLSRWDVSS--NLKNDMINDYERTSERGIKALRKRCQNLLTRLLTTAPYLMQEL----TLKNVFAHAYKTGD-----------------DEIERITQLVKSHLDSLKESDPNYKEEEFYVHVKDSVSKQEIHYDKMSKELKSLKNVQETLIWHGEFLSQQLDAYKEYLQDARNKAAVREGRAS--PGKMTKQNSGPYKFSYTA--LEKEGVIFECKSISYKKKQNIAFTVFCKE 2190
L +++ E+ + N +LE ++ D +I LL+ +KI+++ D +S+ E D + + QK + + +LF+LLQT P Y+AKL + + + + V+F+LY +REE+LLL++F+ AL E + D+ ++ N + +M+ ++ R GQ L+ L +V++ + +D LN++ +PV +Y + + ++ + +VT E+AL ++VK +++ + + +T F AI+ S++ +PYG+R++ K + EKFP + + +IG R++NPAIV P + +++ Q+ RRN IAK+LQ A SNK + ++ + ++ Q + F C+V + +++Y ++L K + I I++ E+ H LL +QD + E N+ + LL +L G+ S D E ++ V + L +++DV N + D T + +R + LT +L T QE ++ KT D ++ E+I +K L L DP K +E + + Q + + EL L+ L F +Q+D YK Y++ + A + G+ S P +M + S YTA L ++GV+ E + + + +N+ F + E
Sbjct: 889 LMKMREEVITLIRSNQQLENDLNLMDIKIGLLVKNKITLQ---DVVSHSKKLTKKNKEQLSDMMMINKQKGGLKALSKEKREKLEAYQHLFYLLQTNPTYLAKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKE-----IMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMF--LGDNAHLSIINEYLSQSYQKFRRFFQTACDVPELQDKFNVDEYSDLVTLTKPV-IYISIGEIINTHTLLLDHQDAIAPEHNDPIHELLDDLGEVPTIESLIGESSGNLNDPNKEALAKTEVSLTLTNKFDVPGDENAEMDARTILLNTKRLIVDVIRFQPGETLTEILETPATSEQEAEHQRAMQRRAIRDAKTPDKMKKSKSVKEDSNLTLQEKKEKIQTGLKK-LTELGTVDPKNKYQELINDIARDIRNQRRYRQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLASK-GKVSKKPREMKGKKSKKISLKYTAARLHEKGVLLEIEDLQVNQFKNVIFEISPTE 1596 The following BLAST results are available for this feature:
BLAST of TCONS_00049936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.