TCONS_00050186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050186
Unique NameTCONS_00050186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050186 ID=TCONS_00050186|Name=TCONS_00050186|organism=Clytia hemisphaerica|type=transcript|length=432bp
aagcctttaaagtttgaactagcaatattcttaaaaaaacttagaaaaaa
ggatcgtggcacttaaagggttaaacagcAATACAAACAGTTTCTTCCAT
ATAAATATCAGCGCATACACCATTAGTGTAACAAAACGTGAATTCGGTCA
ACCGCTTGTAGCATTGCGTTTCATCATCAGCTCGAACAGCAATCATCGAT
AAGCAGAGTTCCAAATTCTTTTTACAACATCTCACATACTTAGCTGGACT
TCTTTTCTTTCTACATATGCGTTCAGCTTTGCTTTGACACTCTGGTCCTC
TAGAAAATTCATTTCCTTGTATAAGCTCATTTGTAATCATGATCAAGACT
AGAACCAGGACTccaaaatttctcattttttcaagaTATCTCAGTTTATA
AAAAGACTTGGAAATTGATCTACTTAATAACC
Run BLAST on NCBI

protein sequence of TCONS_00050186-protein

>TCONS_00050186-protein ID=TCONS_00050186-protein|Name=TCONS_00050186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
LLSRSISKSFYKLRYLEKMRNFGVLVLVLIMITNELIQGNEFSRGPECQS
KAERICRKKRSPAKYVRCCKKNLELCLSMIAVRADDETQCYKRLTEFTFC
YTNGVCADIYMEETVCIAV
Run BLAST on NCBI

transcript from alignment at scaffold_167:1333208..1333639

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050186 ID=TCONS_00050186|Name=TCONS_00050186|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at scaffold_167:1333208..1333639 (Clytia hemisphaerica)
GGTTATTAAGTAGATCAATTTCCAAGTCTTTTTATAAACTGAGATAtctt
gaaaaaatgagaaattttggAGTCCTGGTTCTAGTCTTGATCATGATTAC
AAATGAGCTTATACAAGGAAATGAATTTTCTAGAGGACCAGAGTGTCAAA
GCAAAGCTGAACGCATATGTAGAAAGAAAAGAAGTCCAGCTAAGTATGTG
AGATGTTGTAAAAAGAATTTGGAACTCTGCTTATCGATGATTGCTGTTCG
AGCTGATGATGAAACGCAATGCTACAAGCGGTTGACCGAATTCACGTTTT
GTTACACTAATGGTGTATGCGCTGATATTTATATGGAAGAAACTGTTTGT
ATTgctgtttaaccctttaagtgccacgatccttttttctaagttttttt
aagaatattgctagttcaaactttaaaggctt

Coding sequence (CDS) from alignment at scaffold_167:1333208..1333639

>TCONS_00050186 ID=TCONS_00050186|Name=TCONS_00050186|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_167:1333208..1333639 (Clytia hemisphaerica)
TTATTAAGTAGATCAATTTCCAAGTCTTTTTATAAACTGAGATAtcttga
aaaaatgagaaattttggAGTCCTGGTTCTAGTCTTGATCATGATTACAA
ATGAGCTTATACAAGGAAATGAATTTTCTAGAGGACCAGAGTGTCAAAGC
AAAGCTGAACGCATATGTAGAAAGAAAAGAAGTCCAGCTAAGTATGTGAG
ATGTTGTAAAAAGAATTTGGAACTCTGCTTATCGATGATTGCTGTTCGAG
CTGATGATGAAACGCAATGCTACAAGCGGTTGACCGAATTCACGTTTTGT
TACACTAATGGTGTATGCGCTGATATTTATATGGAAGAAACTGTTTGTAT
Tgctgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031791XLOC_031791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050186-proteinTCONS_00050186-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050186-exon-scaffold_167-1491911889:1333208..1333639TCONS_00050186-exon-scaffold_167-1491911889:1333208..1333639Clytia hemisphaericaexon
TCONS_00050186-exon-scaffold_167-1510915933:1333208..1333639TCONS_00050186-exon-scaffold_167-1510915933:1333208..1333639Clytia hemisphaericaexon
TCONS_00050186-exon-scaffold_167-1575043694:1333208..1333639TCONS_00050186-exon-scaffold_167-1575043694:1333208..1333639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1333208..1333639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0.155141	0	0	0	0	17.9994	15.7019	13.0043	7.30667	5.80257	6.67517	0.105808	0	0.180677	0.29084	0.119431	0.122412	1.01472	0.530914	0.615281	0.450168	0.364826	0.497519	0.512433	1.21956	0.218148	0.465627	2.47213	1.25936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top