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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050362 ID=TCONS_00050362|Name=TCONS_00050362|organism=Clytia hemisphaerica|type=transcript|length=1279bp
aaatgtttcttacatgtttctaaactttttgacataatcagcctattttt
catgcaaagattggaaggttctaaaaaaaacgaggtaaaaaatgttattt
tctcattcttagcctcagcatgtttcttagatgtttcttagtttttaggc
attctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaacaacg
tgtatttaAAATTATCATTGGTTTTCTAAGGACAAGGGTTGATTTACAAG
TAATATTCTTGTTCAGTGCCATAAATTTCTCAATTGCGCATGCGTTTCAA
TAACAACCGCAATTTCCGATTTGATATTACGACTTTTACGACCTTTATGG
ATATCTTGAAAAATAATCATTGAAAAATAatcggaaattttcaaaaatgt
tgttaTTGCGAAATGCAAGCAAACGGTCACTGTAACCGCCTCACGAAACG
ACACCTTTCGTTAATTTTAACATAAAATTGATATACTTCTACCCAGGAGA
GCTGAtctaaaatttaaattcaataaaaagtacATGGGCTAAAATGTGCA
ATATCTCTATTGGAGCCCACTCTCATGCATTTTGTACCCATGCAGTATGC
GTTGATAACTGCAATGACCGATCCAGCACAGAACAAAATGACGGCGATTG
TAAACATAATGAAGTCCTCACGTTCGTAATCTTCAGATTCGGTTTCTTGT
GGGACAAAATTTTCAGCGTTATTAGGATGCAGTTGCGGATCTACTTCTTC
TTCTTGGTTTGGATCGTTGGTTATGTCATTGACAATATCTTGGACCTTTT
TACGTTTGAAGGTTGTAATACACATACAACAATATCAAGTCAATATGTAA
TGTGAGATTTTTTTACCAGAATTCCACTAATATATCGGGTTACCAGCAAA
GTATGAGTTGAATTAATAAGTCAATTATAGCCAGCCGATGATAATATTTT
ATTCTCGTACCAAATACGATTTCATGTATAAAAATACGATTGATAAATAT
GTGTCTTTTAATTGAATGTGGTTTATTTAGTTGCCTCTCAAATGTTTAAG
ACTCAAAATTTTCCATAGGGTTTATATTGTGGCGTTGAAGTGGACCAAAA
GTTTTGGTTGATGCAGCGCGATGTTAGCCGCGCCTTTCGTAAAAGATCAC
GAAGAATATTGAAACTGGAAACACGATGGATTAAAACCAAAAAACACCGA
TCCTTAGTCTGATAACATAAAACAGGAAATGCTAGAAATTAATATCTTTT
ATACCAATAGGTataatattttgtatttt Run BLAST on NCBI protein sequence of TCONS_00050362-protein >TCONS_00050362-protein ID=TCONS_00050362-protein|Name=TCONS_00050362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MCITTFKRKKVQDIVNDITNDPNQEEEVDPQLHPNNAENFVPQETESEDY
EREDFIMFTIAVILFCAGSVIAVINAYCMGTKCMRVGSNRDIAHFSPCTF
Y Run BLAST on NCBI transcript from alignment at scaffold_169:179938..181216 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050362 ID=TCONS_00050362|Name=TCONS_00050362|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at scaffold_169:179938..181216 (Clytia hemisphaerica)
aaaatacaaaatattatACCTATTGGTATAAAAGATATTAATTTCTAGCA
TTTCCTGTTTTATGTTATCAGACTAAGGATCGGTGTTTTTTGGTTTTAAT
CCATCGTGTTTCCAGTTTCAATATTCTTCGTGATCTTTTACGAAAGGCGC
GGCTAACATCGCGCTGCATCAACCAAAACTTTTGGTCCACTTCAACGCCA
CAATATAAACCCTATGGAAAATTTTGAGTCTTAAACATTTGAGAGGCAAC
TAAATAAACCACATTCAATTAAAAGACACATATTTATCAATCGTATTTTT
ATACATGAAATCGTATTTGGTACGAGAATAAAATATTATCATCGGCTGGC
TATAATTGACTTATTAATTCAACTCATACTTTGCTGGTAACCCGATATAT
TAGTGGAATTCTGGTAAAAAAATCTCACATTACATATTGACTTGATATTG
TTGTATGTGTATTACAACCTTCAAACGTAAAAAGGTCCAAGATATTGTCA
ATGACATAACCAACGATCCAAACCAAGAAGAAGAAGTAGATCCGCAACTG
CATCCTAATAACGCTGAAAATTTTGTCCCACAAGAAACCGAATCTGAAGA
TTACGAACGTGAGGACTTCATTATGTTTACAATCGCCGTCATTTTGTTCT
GTGCTGGATCGGTCATTGCAGTTATCAACGCATACTGCATGGGTACAAAA
TGCATGAGAGTGGGCTCCAATAGAGATATTGCACATTTTAGCCCATgtac
tttttattgaatttaaattttagaTCAGCTCTCCTGGGTAGAAGTATATC
AATTTTATGTTAAAATTAACGAAAGGTGTCGTTTCGTGAGGCGGTTACAG
TGACCGTTTGCTTGCATTTCGCAAtaacaacatttttgaaaatttccgat
TATTTTTCAATGATTATTTTTCAAGATATCCATAAAGGTCGTAAAAGTCG
TAATATCAAATCGGAAATTGCGGTTGTTATTGAAACGCATGCGCAATTGA
GAAATTTATGGCACTGAACAAGAATATTACTTGTAAATCAACCCTTGTCC
TTAGAAAACCAATGATAATTTtaaatacacgttgtttttttttaagaaac
acacttttaagaaacatgaggctcagaatgcctaaaaactaagaaacatc
taagaaacatgctgaggctaagaatgagaaaataacattttttacctcgt
tttttttagaaccttccaatctttgcatgaaaaataggctgattatgtca
aaaagtttagaaacatgtaagaaacattt Coding sequence (CDS) from alignment at scaffold_169:179938..181216 >TCONS_00050362 ID=TCONS_00050362|Name=TCONS_00050362|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_169:179938..181216 (Clytia hemisphaerica)
ATGTGTATTACAACCTTCAAACGTAAAAAGGTCCAAGATATTGTCAATGA
CATAACCAACGATCCAAACCAAGAAGAAGAAGTAGATCCGCAACTGCATC
CTAATAACGCTGAAAATTTTGTCCCACAAGAAACCGAATCTGAAGATTAC
GAACGTGAGGACTTCATTATGTTTACAATCGCCGTCATTTTGTTCTGTGC
TGGATCGGTCATTGCAGTTATCAACGCATACTGCATGGGTACAAAATGCA
TGAGAGTGGGCTCCAATAGAGATATTGCACATTTTAGCCCATgtactttt
tattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050362-exon-scaffold_169-1491911889:179938..181216 | TCONS_00050362-exon-scaffold_169-1491911889:179938..181216 | Clytia hemisphaerica | exon |
| TCONS_00050362-exon-scaffold_169-1510915933:179938..181216 | TCONS_00050362-exon-scaffold_169-1510915933:179938..181216 | Clytia hemisphaerica | exon |
| TCONS_00050362-exon-scaffold_169-1575043694:179938..181216 | TCONS_00050362-exon-scaffold_169-1575043694:179938..181216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:179938..181216 . |
Blast
The following BLAST results are available for this feature:
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