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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050390 ID=TCONS_00050390|Name=TCONS_00050390|organism=Clytia hemisphaerica|type=transcript|length=791bp
CAAAGATCTCCACAGATGGTTATTCATCACCGGGCAGTGGGCAAATACAA
CTGTGGCAATTCTTATTGGAGCTGTTAACAGAGAAAAACATGAAAGACAT
AATTATGTGGGTGGGCGAAGAAGGTGCTTTCAAATTGGTTGACCCTGAAC
GAGTTGCTCAGTTATGGGGTGAACGCAAAAACAAACCCTCCATGAACTAC
GAAAAATTGAGTCGAGCCTTGAGGTATTACTACGATGGCGACTTGATACA
CAAAGTGTGTGGTAAGCGCTTCGTTTATCAGTTTGTTTGTGATCTGAAGA
TGTTGTTGGGGTACAGTGCTGCAGAACTTAGTCAATTGGTGAGCGAGAGC
AGCGATGATTGAAACTTATCTATACTTACATTACAGTATAGACACGACGA
TTGTTGTGAACGCTTATCATCTTTTAGAGAataaagaatatttcttaacc
ctttaagtgccacggtcatttttttaagtttaaaaaaaatcgctagttcg
aactttaaaggcttatatctccggatctagaaggagttagaagctcgttg
gATAGCGTTGGATAGNGATAGCTTCATACCAATCCTTGGGATATTTTGCG
ATATTATCCATGTATCGTTGGTTAGCTTTCCATTCTTCCTCCTAAATTCA
taaaacttgaattttttttatccagAAAATCCAACAATTtccaaaatcta
tttttatttgaggcttactttaggcgtaccaactttcgcgattttcgcga
attttgacctttttcgcgaaagtaaatgtctttgaaaattc Run BLAST on NCBI transcript from alignment at scaffold_17:87885..90266- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050390 ID=TCONS_00050390|Name=TCONS_00050390|organism=Clytia hemisphaerica|type=transcript|length=2382bp|location=Sequence derived from alignment at scaffold_17:87885..90266- (Clytia hemisphaerica)
CAAAGATCTCCACAGATGGTTATTGTAAGTTTCCTTTGTTCTTTTATTTA
TATAACACCCTGTTTTGTTCGTCTTTTATCTTTAGAGTCTTTAAATTGTA
ATTTAATTTTTGTAAGCTATTTACAGTGATTTAACACGCTTTAGAAATTG
TTACTCATAGTTTAGGGGTTGAAGCAAGCTCGTTGATTTTTATTGGTTGA
GCATTAGGTTGACGTTGCTCTTACCCTTTCCCCCATTTTTGTGTTTTCTT
TTTTTCTTTGATTGATCATATGAAAATCAAGTGAAAAATTTATGAGAAAG
AAGAAAAACCACAACGCTTTCATTCATAACACGTTTGGAAGTTTTCTTTT
TTAAGTAAATGTTTTTAAAGTTTATCAGAGATTTTTCAACGATTTATCTC
CTTTACGCCAAAATAGTCGATTTATGTCCATAGATATAAAACCCGAAGGG
CTAGATGTCGCACTTTAAGCCATCACAGGCAAAAAAAGTGAATATCGCAA
AAAATATTGCTGCTAACTGTTTTCGAAACCCGCGAAGCTTCTGATTGGGC
AAGCGCTGAAATTCTATTGTAATGTCACGTGACTTTTGGCACACTTTTCA
GCACTCCATCTAGCCCTTCGGGCTTTATAAATCCATGTTTATGCCCCTTA
AAATCAAGTGGTCAAGAGCTATGGCCAAAAGTCTTGGACTTTGTCTAGAA
TTTCGACCTGTTATTTTGACGTGTATGCCGGGTGACCCACGAAAAAGTAT
TATGGGTTGATGACAAATGTGCCCGTAATTTTACGACATTAATTTTTCAT
TGTGATGATGAAGTGCAAAATTTGGTGTAGGGTATAATTCAAATTCGGTT
TAGTGGTTCAAAATATTTTAAGGTATTAAATTAACGCTAAACAATAGAGA
ATAGCTCGTTTTTTAATATTTGTGTAATTTTTATGACGCGATTAATGATC
GAAGCTAATTTATAACCATATAGATGTAACAGAATCATTCAATGAATTAG
CCGTTTTCGTAACTGAGAAACTACAGTTGCGTAATAATATTTATTTTATA
GCAAGTCTTCACTTGTGGCGAGGCCATCAAAGCGCAACCAATACACCTTT
TCGACCGTAGCCGCCAATTGCTGCGCGGGCATTTTTTTGTCCGCTTTATC
CCACTAAAACCGTCCCAGTCCTTTTTTTGCACCTATAGACAATAGAAAAA
TGTGTCAAAAAAAGGATTGGATCGAGTTTAGTGGGATAATCAAATAATTA
AGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTGTATTTGCGA
CCGTTATTCATTGATTGATTGTAGAAGTGCTTATATTTACCCATCGAAAT
TTTATAGAGAGTTAACTCGGCTCTGGCCACGAGCTAGTATATAGTGGAAA
CTTTACTTTAACTCCAACCTCTATAACTCGAATGTCTCTAACTACTTGTC
TTCTCAGTTAAGAGTGCGTTATAAACCTCACTCCACGCTCCCCGTCCGCG
GGTTCGAAAGAAGTTTTCCATACAACCGAATAATGTTTTGTTATGAGAAA
CTTTTTTCAATAAAAACTGCACTCTGTGGAGCACCTACTATGAAACTTTC
ATCTATCATTTTTAGCATCACCGGGCAGTGGGCAAATACAACTGTGGCAA
TTCTTATTGGAGCTGTTAACAGAGAAAAACATGAAAGACATAATTATGTG
GGTGGGCGAAGAAGGTGCTTTCAAATTGGTTGACCCTGAACGAGTTGCTC
AGTTATGGGGTGAACGCAAAAACAAACCCTCCATGAACTACGAAAAATTG
AGTCGAGCCTTGAGGTATTACTACGATGGCGACTTGATACACAAAGTGTG
TGGTAAGCGCTTCGTTTATCAGTTTGTTTGTGATCTGAAGATGTTGTTGG
GGTACAGTGCTGCAGAACTTAGTCAATTGGTGAGCGAGAGCAGCGATGAT
TGAAACTTATCTATACTTACATTACAGTATAGACACGACGATTGTTGTGA
ACGCTTATCATCTTTTAGAGAATAAAGAATATTTCTTAACCCTTTAAGTG
CCACGGTCATTTTTTTAAGTTTAAAAAAAATCGCTAGTTCGAACTTTAAA
GGCTTATATCTCCGGATCTAGAAGGAGTTAGAAGCTCGTTGGATAGCGTT
GGATAGNGATAGCTTCATACCAATCCTTGGGATATTTTGCGATATTATCC
ATGTATCGTTGGTTAGCTTTCCATTCTTCCTCCTAAATTCATAAAACTTG
AATTTTTTTTATCCAGAAAATCCAACAATTTCCAAAATCTATTTTTATTT
GAGGCTTACTTTAGGCGTACCAACTTTCGCGATTTTCGCGAATTTTGACC
TTTTTCGCGAAAGTAAATGTCTTTGAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050390-exon-scaffold_17-1575043694:90243..90266 | TCONS_00050390-exon-scaffold_17-1575043694:90243..90266 | Clytia hemisphaerica | exon |
| TCONS_00050390-exon-scaffold_17-1575043694:87885..88651 | TCONS_00050390-exon-scaffold_17-1575043694:87885..88651 | Clytia hemisphaerica | exon |
| TCONS_00050390-exon-scaffold_17-1510915933:90243..90266 | TCONS_00050390-exon-scaffold_17-1510915933:90243..90266 | Clytia hemisphaerica | exon |
| TCONS_00050390-exon-scaffold_17-1510915933:87885..88651 | TCONS_00050390-exon-scaffold_17-1510915933:87885..88651 | Clytia hemisphaerica | exon |
| TCONS_00050390-exon-scaffold_17-1491911889:90243..90266 | TCONS_00050390-exon-scaffold_17-1491911889:90243..90266 | Clytia hemisphaerica | exon |
| TCONS_00050390-exon-scaffold_17-1491911889:87885..88651 | TCONS_00050390-exon-scaffold_17-1491911889:87885..88651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:87885..90266 - |
Blast
BLAST of TCONS_00050390 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.318e-52 Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 3
Query: 3 KISTDGYSSPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 347
+IS + SSPG+ GQIQLWQFLLELLT+K+ +D I WVG+EG FKL PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct: 301 RISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
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