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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050837 ID=TCONS_00050837|Name=TCONS_00050837|organism=Clytia hemisphaerica|type=transcript|length=927bp
tcGCGGTTTTAgtctctacaaaggagagttttagaaaatataaaattgtt
ctgtaaattacataatactattatgcattatgcaatatgcattatgtttt
atgcattttgtacctgccgacaaacaaacaacaaaaccacACCGAAATTG
AGAGAACCGAACAACGTCGCCGAACACTTTAAGCTAACCAAACAAACCTT
GTACCACTCCACAAATTTATCCAAACTATTAAAAGTTCAATCCAAGAACA
AGATTCCAGGAGGCTTAACTATTCAAGTTAAGACCAAGGAAAACCTTTCC
AATAACCACAAAAACATATGGGACGAGGCATTAACTCGTGCCAGCACTAC
ACTCCTGGAGGTCCTGATAGAACACCACCTGCAACAGCAGGAGTCCTATC
AGGAGAAACGCCTCCTAATCCAAAAAAATCTCTCAACAAGGCAGGTTGAG
GAAAACAATCGAAGAGCAGACGAAGAAATAAACTCAAAGAAGGAGAACAA
CGACCCCGAGAGAAAGAGGAAGTGGGAGAACAACAACCATCAACAAAGAT
CCGACCCAACAAAGAAACCGAGGATGCAAAAAAACTAGACTGTTTtgtaa
atactgtaaatattttttatacaaaatttaaCATACATAAAAAGAAACAC
ACACCCCAACCATACCacaaaatttcttatacactTTCTTCATCAGCCTC
TTGTGTCTAACCACCCGAAAGTCttgtgaaaaacttttcaaaactaaAAC
CACGACAAGTCGAAAAAGACGCATTAAACAAAGGACTCACTTTTGTCCCT
ACACCACAAGCCACTACTTTGAAAAAACACCTTAAATTCGCTATCGAAAA
CTTCTTCAACAGAATATCCCAAAGATACTTTTTTCGAAATCACCCTCGAA
AAATTAAACCACTATTTCGAAAAACAA Run BLAST on NCBI protein sequence of TCONS_00050837-protein >TCONS_00050837-protein ID=TCONS_00050837-protein|Name=TCONS_00050837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MHYAICIMFYAFCTCRQTNNKTTPKLREPNNVAEHFKLTKQTLYHSTNLS
KLLKVQSKNKIPGGLTIQVKTKENLSNNHKNIWDEALTRASTTLLEVLIE
HHLQQQESYQEKRLLIQKNLSTRQVEENNRRADEEINSKKENNDPERKRK
WENNNHQQRSDPTKKPRMQKN Run BLAST on NCBI transcript from alignment at scaffold_189:51317..52243 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050837 ID=TCONS_00050837|Name=TCONS_00050837|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at scaffold_189:51317..52243 (Clytia hemisphaerica)
TTGTTTTTCGAAATAGTGGTTTAATTTTTCGAGGGTGATTTCGAAAAAAG
TATCTTTGGGATATTCTGTTGAAGAAGTTTTCGATAGCGAATTTAAGGTG
TTTTTTCAAAGTAGTGGCTTGTGGTGTAGGGACAAAAGTGAGTCCTTTGT
TTAATGCGTCTTTTTCGACTTGTCGTGGTTttagttttgaaaagtttttc
acaaGACTTTCGGGTGGTTAGACACAAGAGGCTGATGAAGAAagtgtata
agaaattttgtGGTATGGTTGGGGTGTGTGTTTCTTTTTATGTATGttaa
attttgtataaaaaatatttacagtatttacaAAACAGTCTAGTTTTTTT
GCATCCTCGGTTTCTTTGTTGGGTCGGATCTTTGTTGATGGTTGTTGTTC
TCCCACTTCCTCTTTCTCTCGGGGTCGTTGTTCTCCTTCTTTGAGTTTAT
TTCTTCGTCTGCTCTTCGATTGTTTTCCTCAACCTGCCTTGTTGAGAGAT
TTTTTTGGATTAGGAGGCGTTTCTCCTGATAGGACTCCTGCTGTTGCAGG
TGGTGTTCTATCAGGACCTCCAGGAGTGTAGTGCTGGCACGAGTTAATGC
CTCGTCCCATATGTTTTTGTGGTTATTGGAAAGGTTTTCCTTGGTCTTAA
CTTGAATAGTTAAGCCTCCTGGAATCTTGTTCTTGGATTGAACTTTTAAT
AGTTTGGATAAATTTGTGGAGTGGTACAAGGTTTGTTTGGTTAGCTTAAA
GTGTTCGGCGACGTTGTTCGGTTCTCTCAATTTCGGTgtggttttgttgt
ttgtttgtcggcaggtacaaaatgcataaaacataatgcatattgcataa
tgcataatagtattatgtaatttacagaacaattttatattttctaaaac
tctcctttgtagagacTAAAACCGCga Coding sequence (CDS) from alignment at scaffold_189:51317..52243 >TCONS_00050837 ID=TCONS_00050837|Name=TCONS_00050837|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_189:51317..52243 (Clytia hemisphaerica)
CTAGTTTTTTTGCATCCTCGGTTTCTTTGTTGGGTCGGATCTTTGTTGAT
GGTTGTTGTTCTCCCACTTCCTCTTTCTCTCGGGGTCGTTGTTCTCCTTC
TTTGAGTTTATTTCTTCGTCTGCTCTTCGATTGTTTTCCTCAACCTGCCT
TGTTGAGAGATTTTTTTGGATTAGGAGGCGTTTCTCCTGATAGGACTCCT
GCTGTTGCAGGTGGTGTTCTATCAGGACCTCCAGGAGTGTAGTGCTGGCA
CGAGTTAATGCCTCGTCCCATATGTTTTTGTGGTTATTGGAAAGGTTTTC
CTTGGTCTTAACTTGAATAGTTAAGCCTCCTGGAATCTTGTTCTTGGATT
GAACTTTTAATAGTTTGGATAAATTTGTGGAGTGGTACAAGGTTTGTTTG
GTTAGCTTAAAGTGTTCGGCGACGTTGTTCGGTTCTCTCAATTTCGGTgt
ggttttgttgtttgtttgtcggcaggtacaaaatgcataaaacataatgc
atattgcataatgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050837-exon-scaffold_189-1491911889:51317..52243 | TCONS_00050837-exon-scaffold_189-1491911889:51317..52243 | Clytia hemisphaerica | exon |
| TCONS_00050837-exon-scaffold_189-1510915933:51317..52243 | TCONS_00050837-exon-scaffold_189-1510915933:51317..52243 | Clytia hemisphaerica | exon |
| TCONS_00050837-exon-scaffold_189-1575043694:51317..52243 | TCONS_00050837-exon-scaffold_189-1575043694:51317..52243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:51317..52243 . |
Blast
The following BLAST results are available for this feature:
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