TCONS_00050841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050841
Unique NameTCONS_00050841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050841 ID=TCONS_00050841|Name=TCONS_00050841|organism=Clytia hemisphaerica|type=transcript|length=473bp
TATCAAACAGCTAATAGGTAATCAAGGTCCTTATATAATAATTAATTACC
AATTTGTAATTACATTTGATTTGTTGGTTGGATATTTAATACCCATCTTA
AAAAAGGTGAATGTGTGGAAAAAGGTTGTCAAcagaaagagagagagagt
atTTTGCATGAGTGCTAATAAAAGATGAAAATGGTTGTTCAAATCCATCA
ACTTTATAATaaattagagaagaaactgAGTGACAAACCTTGAAAATAAA
CACTAATGAAGACATCTTTCTGTAAGCGTGCAGTCGCCATGTTGTTTACG
CATAAAATGAAGCACCCGGATCCAGTAACTGCATGTAGGTATCTTAAAAG
AACGTTATCTGATGGGCATCCGCTACGCCAGTCATTAGAGATTCACAGCA
ACAGCGTACTCCGATAAAGATCCGTACTCCTTTAATAGCGTACACGGATG
TACATCCGCTACTATTTACATAA
Run BLAST on NCBI

transcript from alignment at scaffold_189:80295..80767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050841 ID=TCONS_00050841|Name=TCONS_00050841|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_189:80295..80767 (Clytia hemisphaerica)
TTATGTAAATAGTAGCGGATGTACATCCGTGTACGCTATTAAAGGAGTAC
GGATCTTTATCGGAGTACGCTGTTGCTGTGAATCTCTAATGACTGGCGTA
GCGGATGCCCATCAGATAACGTTCTTTTAAGATACCTACATGCAGTTACT
GGATCCGGGTGCTTCATTTTATGCGTAAACAACATGGCGACTGCACGCTT
ACAGAAAGATGTCTTCATTAGTGTTTATTTTCAAGGTTTGTCACTcagtt
tcttctctaatttATTATAAAGTTGATGGATTTGAACAACCATTTTCATC
TTTTATTAGCACTCATGCAAAatactctctctctctttctgTTGACAACC
TTTTTCCACACATTCACCTTTTTTAAGATGGGTATTAAATATCCAACCAA
CAAATCAAATGTAATTACAAATTGGTAATTAATTATTATATAAGGACCTT
GATTACCTATTAGCTGTTTGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032211XLOC_032211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050841-exon-scaffold_189-1491911889:80295..80767TCONS_00050841-exon-scaffold_189-1491911889:80295..80767Clytia hemisphaericaexon
TCONS_00050841-exon-scaffold_189-1510915933:80295..80767TCONS_00050841-exon-scaffold_189-1510915933:80295..80767Clytia hemisphaericaexon
TCONS_00050841-exon-scaffold_189-1575043694:80295..80767TCONS_00050841-exon-scaffold_189-1575043694:80295..80767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:80295..80767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134385	0	0	0.719113	0.181226	0.286415	0.172774	0.646994	0.246595	0.280542	0.408451	0.984499	1.16112	0.928173	0.401199	0.818907	0.968764	0.930613	0	0.448461	0.594775	0	0.496222	0.700422	1.2745	1.54524	0.296717	0.453517	0.240178	0.151968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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